Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g32486 Brassica carinata HOM05D007846 ORTHO05D010837 1.3e-71 273.5 154 100.0
A10p29250 Brassica napus HOM05D007846 ORTHO05D010837 2.2e-58 229.6 153 86.9
BraA10t44971Z Brassica rapa HOM05D007846 ORTHO05D010837 2.2e-58 229.6 153 86.9
BcaC06g32428 Brassica carinata HOM05D007846 ORTHO05D010837 6.9e-57 224.6 154 84.4
C09p69640 Brassica napus HOM05D007846 ORTHO05D010837 6.9e-57 224.6 154 84.4
BolC9t59707H Brassica oleracea HOM05D007846 ORTHO05D010837 6.9e-57 224.6 154 84.4
BolC8t49462H Brassica oleracea HOM05D007846 ORTHO05D010837 2.1e-37 159.8 154 67.5
Sp6g35350 Schrenkiella parvula HOM05D007846 ORTHO05D010837 2.7e-37 159.5 117 80.3
C08p18270 Brassica napus HOM05D007846 ORTHO05D010837 3.0e-36 156.0 154 66.2
BraA08t34994Z Brassica rapa HOM05D007846 ORTHO05D010837 1.5e-35 153.7 154 66.2
BraA02t04921Z Brassica rapa HOM05D007846 ORTHO05D010837 1.1e-30 137.5 134 63.4
BcaC03g13199 Brassica carinata HOM05D007846 ORTHO05D010837 1.6e-29 133.7 134 61.9
C02p03150 Brassica napus HOM05D007846 ORTHO05D010837 1.6e-29 133.7 134 61.9
BolC2t06277H Brassica oleracea HOM05D007846 ORTHO05D010837 1.6e-29 133.7 134 61.9
Carub.0006s0650 Capsella rubella HOM05D007846 ORTHO05D010837 4.7e-29 132.1 152 57.9
AT5G07520 Arabidopsis thaliana HOM05D007846 ORTHO05D010837 3.7e-26 122.5 156 54.5
AL6G17830 Arabidopsis lyrata HOM05D007846 ORTHO05D010837 8.3e-26 121.3 158 53.2
C09p69650 Brassica napus HOM05D007846 ORTHO05D010837 1.8e-20 103.6 154 48.7
BolC9t59708H Brassica oleracea HOM05D007846 ORTHO05D010837 1.8e-20 103.6 154 48.7
Thhalv10014560m.g Eutrema salsugineum HOM05D007846 ORTHO05D010837 1.2e-19 100.9 152 50.0
AL6G17910 Arabidopsis lyrata HOM05D007846 ORTHO05D010837 2.6e-19 99.8 162 48.8
BcaB01g05692 Brassica carinata HOM05D007846 ORTHO05D010837 2.6e-19 99.8 92 67.4
AT5G07600 Arabidopsis thaliana HOM05D007846 ORTHO05D010837 9.8e-19 97.8 170 46.5
A03p03350 Brassica napus HOM05D007846 ORTHO05D010837 1.3e-18 97.4 86 70.9
Carub.0006s0658 Capsella rubella HOM05D007846 ORTHO05D010837 1.3e-18 97.4 155 47.7
BcaB01g06047 Brassica carinata HOM05D007846 ORTHO05D010837 2.2e-18 96.7 86 69.8
BcaB01g06048 Brassica carinata HOM05D007846 ORTHO05D010837 2.2e-18 96.7 86 69.8
C03p03790 Brassica napus HOM05D007846 ORTHO05D010837 2.2e-18 96.7 86 69.8
BcaC06g32487 Brassica carinata HOM05D007846 ORTHO05D010837 2.9e-18 96.3 94 64.9
BcaB01g06046 Brassica carinata HOM05D007846 ORTHO05D010837 6.4e-18 95.1 86 69.8
BolC3t12914H Brassica oleracea HOM05D007846 ORTHO05D010837 6.4e-18 95.1 86 69.8
Carub.0006s0651 Capsella rubella HOM05D007846 ORTHO05D010837 1.1e-17 94.4 160 48.1
AT5G07530 Arabidopsis thaliana HOM05D007846 ORTHO05D010837 3.2e-17 92.8 146 48.6
AL6G17840 Arabidopsis lyrata HOM05D007846 ORTHO05D010837 4.1e-17 92.4 145 48.3
Sp6g35330 Schrenkiella parvula HOM05D007846 ORTHO05D021761 7.0e-17 91.7 86 64.0
Aa31LG3G18890 Aethionema arabicum HOM05D007846 ORTHO05D010837 4.6e-16 89.0 135 44.4
A03p03340 Brassica napus HOM05D007846 ORTHO05D010837 1.5e-14 84.0 86 65.1
BraA03t09686Z Brassica rapa HOM05D007846 ORTHO05D010837 1.5e-14 84.0 86 65.1
CARHR205620 Cardamine hirsuta HOM05D007846 ORTHO05D010837 1.9e-14 83.6 86 59.3
AT5G07540 Arabidopsis thaliana HOM05D007846 ORTHO05D031404 6.2e-13 78.6 86 55.8
C09p69670 Brassica napus HOM05D007846 ORTHO05D021761 1.8e-12 77.0 86 55.8
BolC9t59710H Brassica oleracea HOM05D007846 ORTHO05D021761 1.8e-12 77.0 86 55.8
BcaC06g32488 Brassica carinata HOM05D021341 ORTHO05D093304 2.3e-12 76.6 67 67.2
AL6G17850 Arabidopsis lyrata HOM05D007846 ORTHO05D031404 4.0e-12 75.9 86 55.8
A10p29260 Brassica napus HOM05D007846 ORTHO05D010837 4.0e-12 75.9 154 42.2
BraA10t44972Z Brassica rapa HOM05D007846 ORTHO05D010837 4.0e-12 75.9 154 42.2
Carub.0006s0653 Capsella rubella HOM05D007846 ORTHO05D000624 4.0e-12 75.9 89 50.6
BcaB05g21610 Brassica carinata HOM05D007846 ORTHO05D010837 5.2e-12 75.5 86 55.8
Thhalv10013795m.g Eutrema salsugineum HOM05D007846 ORTHO05D195878 6.8e-12 75.1 87 58.6
BcaC06g32424 Brassica carinata HOM05D007846 ORTHO05D021761 8.9e-12 74.7 85 55.3
A10p29300 Brassica napus HOM05D007846 ORTHO05D021761 1.2e-11 74.3 86 55.8
BraA10t44974Z Brassica rapa HOM05D007846 ORTHO05D021761 1.2e-11 74.3 86 55.8
Thhalv10015090m.g Eutrema salsugineum HOM05D007846 ORTHO05D000624 3.4e-11 72.8 79 57.0
CARHR205610 Cardamine hirsuta HOM05D007846 ORTHO05D000624 9.8e-11 71.2 79 53.2
Thhalv10015089m.g Eutrema salsugineum HOM05D000805 ORTHO05D000624 1.7e-10 70.5 79 55.7
Sp6g35320 Schrenkiella parvula HOM05D000805 ORTHO05D000624 1.7e-10 70.5 76 57.9
AT5G07550 Arabidopsis thaliana HOM05D007846 ORTHO05D000624 3.7e-10 69.3 89 46.1
AL6G17810 Arabidopsis lyrata HOM05D007846 ORTHO05D038626 6.4e-10 68.6 85 52.9
Thhalv10014587m.g Eutrema salsugineum HOM05D007846 ORTHO05D010837 6.4e-10 68.6 156 40.4
Aa31LG3G18860 Aethionema arabicum HOM05D007846 ORTHO05D000624 1.1e-09 67.8 85 45.9
AL6G17860 Arabidopsis lyrata HOM05D007846 ORTHO05D000624 1.1e-09 67.8 89 44.9
Sp6g35310 Schrenkiella parvula HOM05D007846 ORTHO05D000624 2.4e-09 66.6 79 49.4
BcaB01g06049 Brassica carinata HOM05D007846 ORTHO05D000624 3.2e-09 66.2 79 51.9
BolC3t12915H Brassica oleracea HOM05D000805 ORTHO05D000624 3.2e-09 66.2 79 51.9
CARHR205600 Cardamine hirsuta HOM05D007846 ORTHO05D012592 3.2e-09 66.2 77 51.9
Sp6g35340 Schrenkiella parvula HOM05D007846 ORTHO05D371621 3.2e-09 66.2 87 55.2
C03p03800 Brassica napus HOM05D000805 ORTHO05D000624 4.1e-09 65.9 79 51.9
AT5G07510 Arabidopsis thaliana HOM05D007846 ORTHO05D038626 7.0e-09 65.1 142 42.3
CARHR205580 Cardamine hirsuta HOM05D007846 ORTHO05D012592 7.0e-09 65.1 71 56.3
A10p29310 Brassica napus HOM05D007846 ORTHO05D023961 1.2e-08 64.3 76 52.6
BraA02t04922Z Brassica rapa HOM05D007846 ORTHO05D010837 1.2e-08 64.3 86 50.0
BraA03t09687Z Brassica rapa HOM05D000805 ORTHO05D000624 1.2e-08 64.3 79 50.6
BraA10t44975Z Brassica rapa HOM05D007846 ORTHO05D023961 1.2e-08 64.3 76 52.6
AL6G17870 Arabidopsis lyrata HOM05D007846 ORTHO05D012592 1.6e-08 63.9 89 44.9
AT5G07560 Arabidopsis thaliana HOM05D007846 ORTHO05D012592 2.7e-08 63.2 79 50.6
BcaC03g13197 Brassica carinata HOM05D007846 ORTHO05D010837 2.7e-08 63.2 86 51.2
BcaC06g32423 Brassica carinata HOM05D007846 ORTHO05D023961 2.7e-08 63.2 76 51.3
C02p03180 Brassica napus HOM05D007846 ORTHO05D010837 2.7e-08 63.2 86 51.2
C09p69680 Brassica napus HOM05D007846 ORTHO05D023961 2.7e-08 63.2 76 51.3
BolC2t06280H Brassica oleracea HOM05D007846 ORTHO05D010837 2.7e-08 63.2 86 51.2
BolC9t59711H Brassica oleracea HOM05D007846 ORTHO05D023961 2.7e-08 63.2 76 51.3
BcaC07g38876 Brassica carinata HOM05D007846 ORTHO05D091870 3.5e-08 62.8 68 55.9
A03p03360 Brassica napus HOM05D000805 ORTHO05D000624 4.6e-08 62.4 79 49.4
BraA02t04924Z Brassica rapa HOM05D007846 ORTHO05D012592 1.3e-07 60.8 99 42.4
C02p03200 Brassica napus HOM05D007846 ORTHO05D012592 1.7e-07 60.5 99 42.4
BolC2t06282H Brassica oleracea HOM05D007846 ORTHO05D012592 1.7e-07 60.5 99 42.4
Thhalv10014500m.g Eutrema salsugineum HOM05D000805 ORTHO05D012592 3.0e-07 59.7 76 48.7
Sp6g35300 Schrenkiella parvula HOM05D000805 ORTHO05D012592 3.9e-07 59.3 86 44.2
BcaC06g32490 Brassica carinata HOM05D007846 ORTHO05D000624 8.6e-07 58.2 77 49.4
A10p29270 Brassica napus HOM05D021341 ORTHO05D024077 8.6e-07 58.2 46 73.9
BraA10t44973Z Brassica rapa HOM05D021341 ORTHO05D024077 8.6e-07 58.2 46 73.9
Thhalv10015579m.g Eutrema salsugineum HOM05D000805 ORTHO05D196068 8.6e-07 58.2 76 46.1
BcaB05g21609 Brassica carinata HOM05D000805 ORTHO05D012592 1.1e-06 57.8 78 47.4
BraA02t04923Z Brassica rapa HOM05D000805 ORTHO05D012592 1.1e-06 57.8 78 47.4
Carub.0006s0654 Capsella rubella HOM05D000805 ORTHO05D012592 1.1e-06 57.8 72 51.4
Sp2g24820 Schrenkiella parvula HOM05D013628 ORTHO05D015917 1.1e-06 57.8 77 46.8
AT5G07571 Arabidopsis thaliana HOM05D000805 ORTHO05D012592 1.5e-06 57.4 86 46.5
Carub.0006s0652 Capsella rubella HOM05D007846 ORTHO05D031404 1.5e-06 57.4 86 45.3
BolC3t12917H Brassica oleracea HOM05D000805 ORTHO05D012592 1.9e-06 57.0 77 48.1
BcaC06g32425 Brassica carinata HOM05D021341 ORTHO05D024077 2.5e-06 56.6 69 55.1
C02p03190 Brassica napus HOM05D000805 ORTHO05D012592 2.5e-06 56.6 78 46.2
C09p69660 Brassica napus HOM05D021341 ORTHO05D024077 2.5e-06 56.6 69 55.1
BolC2t06281H Brassica oleracea HOM05D000805 ORTHO05D012592 2.5e-06 56.6 78 46.2
BolC9t59709H Brassica oleracea HOM05D021341 ORTHO05D024077 2.5e-06 56.6 69 55.1
A03p03370 Brassica napus HOM05D000805 ORTHO05D012592 5.6e-06 55.5 67 52.2
C03p03820 Brassica napus HOM05D000805 ORTHO05D012592 5.6e-06 55.5 70 48.6
A03p03380 Brassica napus HOM05D000805 ORTHO05D012592 9.5e-06 54.7 75 46.7
BraA03t09689Z Brassica rapa HOM05D000805 ORTHO05D012592 9.5e-06 54.7 75 46.7
COL.COLO4_37336 Corchorus olitorius HOM05D000805 ORTHO05D000624 9.5e-06 54.7 71 47.9


User provided reference genes

Program Settings