Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g32471 Brassica carinata HOM05D000949 ORTHO05D093406 1.8e-29 132.5 101 100.0
Thhalv10006945m.g Eutrema salsugineum HOM05D000949 ORTHO05D001276 8.8e-24 113.6 96 71.9
A08p30600 Brassica napus HOM05D000949 ORTHO05D001276 5.7e-23 110.9 96 90.6
BraA08t34991Z Brassica rapa HOM05D000949 ORTHO05D001276 5.7e-23 110.9 96 90.6
C08p18310 Brassica napus HOM05D000949 ORTHO05D001276 6.3e-22 107.5 96 77.1
BolC8t49465H Brassica oleracea HOM05D000949 ORTHO05D001276 6.3e-22 107.5 96 77.1
BolC8t51905H Brassica oleracea HOM05D000949 ORTHO05D001276 1.1e-21 106.7 99 86.9
A09p60150 Brassica napus HOM05D000949 ORTHO05D001276 1.4e-21 106.3 100 87.0
BraA09t41384Z Brassica rapa HOM05D000949 ORTHO05D001276 1.4e-21 106.3 100 87.0
C08p43590 Brassica napus HOM05D000949 ORTHO05D001276 2.4e-21 105.5 97 87.6
Aa31LG7G3030 Aethionema arabicum HOM05D000949 ORTHO05D001276 2.6e-20 102.1 104 75.0
CARHR018590 Cardamine hirsuta HOM05D000949 ORTHO05D001276 1.3e-19 99.8 99 63.6
Carub.0001s1768 Capsella rubella HOM05D000949 ORTHO05D001276 2.2e-19 99.0 97 61.9
C07p31690 Brassica napus HOM05D000949 ORTHO05D001276 8.5e-19 97.1 96 55.2
AL1G30340 Arabidopsis lyrata HOM05D000949 ORTHO05D001276 1.9e-18 95.9 97 61.9
Sp1g16040 Schrenkiella parvula HOM05D000949 ORTHO05D001276 2.5e-18 95.5 100 68.0
AT1G17980 Arabidopsis thaliana HOM05D000949 ORTHO05D001276 4.2e-18 94.7 97 61.9
BcaC06g34205 Brassica carinata HOM05D000949 ORTHO05D001276 5.5e-18 94.4 96 54.2
BolC7t43708H Brassica oleracea HOM05D000949 ORTHO05D001276 5.5e-18 94.4 96 54.2
Sp2g12720 Schrenkiella parvula HOM05D000949 ORTHO05D001276 2.2e-14 82.4 84 51.2
Sp2g21980 Schrenkiella parvula HOM05D000949 ORTHO05D001276 2.2e-14 82.4 92 66.3
BraA06t27327Z Brassica rapa HOM05D000949 ORTHO05D001276 3.7e-14 81.6 96 66.7
Aa31LG4G4050 Aethionema arabicum HOM05D000949 ORTHO05D001276 5.3e-13 77.8 43 79.1
THA.LOC104812155 Tarenaya hassleriana HOM05D000949 ORTHO05D001276 2.0e-12 75.9 94 44.7
COL.COLO4_04946 Corchorus olitorius HOM05D000949 ORTHO05D001276 5.0e-11 71.2 46 69.6
Gohir.A09G176100 Gossypium hirsutum HOM05D000949 ORTHO05D001276 6.5e-11 70.9 46 67.4
Gorai.006G193600 Gossypium raimondii HOM05D000949 ORTHO05D001276 6.5e-11 70.9 46 67.4
Gohir.D09G171800 Gossypium hirsutum HOM05D000949 ORTHO05D001276 1.1e-10 70.1 46 67.4
arahy.Tifrunner.gnm1.ann1.8H6BM6 Arachis hypogaea HOM05D000949 ORTHO05D001276 1.5e-10 69.7 43 72.1
A06p44530 Brassica napus HOM05D000949 ORTHO05D001276 3.2e-10 68.6 96 64.6
CiPaw.16G089500 Carya illinoinensis HOM05D000949 ORTHO05D001276 4.2e-10 68.2 46 63.0
arahy.Tifrunner.gnm1.ann1.K0X5TV Arachis hypogaea HOM05D000949 ORTHO05D001276 5.5e-10 67.8 43 69.8
Ciclev10011139m.g Citrus clementina HOM05D000949 ORTHO05D001276 5.5e-10 67.8 44 61.4
CiPaw.15G137900 Carya illinoinensis HOM05D000949 ORTHO05D001276 9.4e-10 67.0 46 63.0
arahy.Tifrunner.gnm1.ann1.594W3X Arachis hypogaea HOM05D000949 ORTHO05D001276 1.2e-09 66.6 43 69.8
ClCG04G010850 Citrullus lanatus HOM05D000949 ORTHO05D001276 1.2e-09 66.6 43 69.8
TPR.G12777 Trifolium pratense HOM05D000949 ORTHO05D001276 1.2e-09 66.6 43 69.8
arahy.Tifrunner.gnm1.ann1.HKPY8E Arachis hypogaea HOM05D000949 ORTHO05D001276 1.6e-09 66.2 43 67.4
MD14G1231300 Malus domestica HOM05D000949 ORTHO05D001276 1.6e-09 66.2 46 65.2
Medtr8g106560 Medicago truncatula HOM05D000949 ORTHO05D001276 1.6e-09 66.2 43 69.8
Lalb_Chr16g0387271 Lupinus albus HOM05D000949 ORTHO05D001276 2.1e-09 65.9 46 65.2
CiPaw.15G138000 Carya illinoinensis HOM05D000949 ORTHO05D001276 2.7e-09 65.5 46 60.9
Thecc.03G044600 Theobroma cacao HOM05D000949 ORTHO05D001276 2.7e-09 65.5 46 63.0
Duzib084G0139 Durio zibethinus HOM05D000949 ORTHO05D001276 3.6e-09 65.1 43 60.5
Manes.05G137200 Manihot esculenta HOM05D000949 ORTHO05D001276 3.6e-09 65.1 45 60.0
MELO3C002115.2 Cucumis melo HOM05D000949 ORTHO05D001276 4.7e-09 64.7 45 64.4
CsaV3_1G006980 Cucumis sativus L. HOM05D000949 ORTHO05D001276 4.7e-09 64.7 45 64.4
Manes.01G015800 Manihot esculenta HOM05D000949 ORTHO05D001276 6.1e-09 64.3 43 62.8
Lj4g0024044 Lotus japonicus HOM05D000949 ORTHO05D001276 1.0e-08 63.5 43 62.8
BcaC06g34155 Brassica carinata HOM05D000949 ORTHO05D031817 1.4e-08 63.2 45 71.1
C07p32100 Brassica napus HOM05D000949 ORTHO05D001276 1.4e-08 63.2 45 71.1
BolC7t43751H Brassica oleracea HOM05D000949 ORTHO05D001276 1.4e-08 63.2 45 71.1
Phvul.002G325900 Phaseolus vulgaris HOM05D000949 ORTHO05D001276 1.4e-08 63.2 39 74.4
VMungo0251G0706 Vigna mungo HOM05D000949 ORTHO05D001276 1.4e-08 63.2 46 63.0
Lalb_Chr09g0330641 Lupinus albus HOM05D000949 ORTHO05D001276 1.8e-08 62.8 46 60.9
Sed0008221 Sechium edule HOM05D000949 ORTHO05D001276 1.8e-08 62.8 45 62.2
Potri.015G043200 Populus trichocarpa HOM05D000949 ORTHO05D001276 2.3e-08 62.4 46 52.2
BcaC06g31321 Brassica carinata HOM05D000949 ORTHO05D001276 4.0e-08 61.6 96 42.7
Eucgr.K02240 Eucalyptus grandis HOM05D000949 ORTHO05D001276 4.0e-08 61.6 46 54.3
Atru.chr9.927 Acer truncatum HOM05D000949 ORTHO05D001276 5.2e-08 61.2 46 54.3
Duzib205G0274 Durio zibethinus HOM05D000949 ORTHO05D001276 5.2e-08 61.2 46 56.5
Sabra15G0042100 Salix brachista HOM05D000949 ORTHO05D001276 5.2e-08 61.2 46 54.3
Prupe.5G226600 Prunus persica HOM05D000949 ORTHO05D001276 8.8e-08 60.5 43 62.8
Cfa019721 Carpinus fangiana HOM05D000949 ORTHO05D001276 1.5e-07 59.7 46 63.0
RcHm_v2.0_Chr7g0179251 Rosa chinensis HOM05D000949 ORTHO05D001276 1.5e-07 59.7 45 57.8
TWI15G0984 Tripterygium wilfordii HOM05D000949 ORTHO05D001276 1.5e-07 59.7 45 53.3
Lalb_Chr14g0370881 Lupinus albus HOM05D000949 ORTHO05D001276 2.0e-07 59.3 45 57.8
Haze_18763 Corylus avellana HOM05D000949 ORTHO05D001276 2.6e-07 58.9 46 63.0
MD17G1263100 Malus domestica HOM05D000949 ORTHO05D001276 2.6e-07 58.9 46 54.3
TWI60G0356 Tripterygium wilfordii HOM05D000949 ORTHO05D001276 2.6e-07 58.9 44 54.5
Ca_17234_v3 Cicer arietinum L. HOM05D000949 ORTHO05D001276 3.3e-07 58.5 38 65.8
FvH4_5g16820 Fragaria vesca HOM05D000949 ORTHO05D001276 3.3e-07 58.5 46 60.9
FAN08G0431 Fragaria x ananassa HOM05D000949 ORTHO05D001276 3.3e-07 58.5 46 60.9
FAN18G1133 Fragaria x ananassa HOM05D000949 ORTHO05D001276 3.3e-07 58.5 46 60.9
MD06G1222200 Malus domestica HOM05D000949 ORTHO05D001276 3.3e-07 58.5 46 58.7
CANSAT64G0299 Cannabis sativa HOM05D000949 ORTHO05D001276 4.4e-07 58.2 46 56.5
EL10Ac3g07265 Beta vulgaris HOM05D000949 ORTHO05D001276 5.7e-07 57.8 39 64.1
RcHm_v2.0_Chr2g0120741 Rosa chinensis HOM05D000949 ORTHO05D001276 5.7e-07 57.8 38 60.5
Psat1g034160 Pisum sativum HOM05D000949 ORTHO05D001276 7.5e-07 57.4 43 53.5
Sabra15G0047000 Salix brachista HOM05D000949 ORTHO05D004334 7.5e-07 57.4 46 52.2
Ca_25464_v3 Cicer arietinum L. HOM05D000949 ORTHO05D001276 9.7e-07 57.0 43 53.5
MD09G1233900 Malus domestica HOM05D000949 ORTHO05D001276 9.7e-07 57.0 46 56.5
FAN13G3110 Fragaria x ananassa HOM05D000949 ORTHO05D001276 1.3e-06 56.6 46 58.7
Glyma.09G179500 Glycine max HOM05D000949 ORTHO05D001276 1.7e-06 56.2 42 54.8
Sed0016849 Sechium edule HOM05D000949 ORTHO05D001276 1.7e-06 56.2 39 64.1
QL10p026981 Quercus lobata HOM05D000949 ORTHO05D001276 2.2e-06 55.8 46 56.5
PSO063G2920 Papaver somniferum HOM05D000949 ORTHO05D001276 2.8e-06 55.5 46 54.3
PSO832G2251 Papaver somniferum HOM05D000949 ORTHO05D001276 2.8e-06 55.5 46 54.3
FAN04G1080 Fragaria x ananassa HOM05D000949 ORTHO05D001276 3.7e-06 55.1 46 58.7
Ah.04g150780 Amaranthus hybridus HOM05D000949 ORTHO05D001276 4.8e-06 54.7 36 61.1
Glyma.07G099400 Glycine max HOM05D000949 ORTHO05D001276 4.8e-06 54.7 43 53.5
Aqoxy3G00182 Aquilegia oxysepala HOM05D000949 ORTHO05D001276 6.3e-06 54.3 45 53.3
Dinv17525 Davidia involucrata HOM05D000949 ORTHO05D001276 6.3e-06 54.3 46 56.5
Nn2g15634 Nelumbo nucifera HOM05D000949 ORTHO05D001276 6.3e-06 54.3 45 51.1
Medtr6g082000 Medicago truncatula HOM05D000949 ORTHO05D001276 8.2e-06 53.9 43 48.8


User provided reference genes

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