Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g32443 Brassica carinata HOM05D007228 ORTHO05D009099 0.0e+00 1302.3 656 100.0
C09p69520 Brassica napus HOM05D007228 ORTHO05D009099 0.0e+00 1237.2 660 95.3
BolC9t59696H Brassica oleracea HOM05D007228 ORTHO05D009099 0.0e+00 1234.6 659 95.1
BraA10t44962Z Brassica rapa HOM05D007228 ORTHO05D009099 0.0e+00 1193.3 661 92.7
A10p29130 Brassica napus HOM05D007228 ORTHO05D009099 0.0e+00 1184.9 661 92.1
Thhalv10012911m.g Eutrema salsugineum HOM05D007228 ORTHO05D009099 0.0e+00 1112.1 659 85.4
CARHR205770 Cardamine hirsuta HOM05D007228 ORTHO05D009099 1.3e-301 1039.3 663 79.9
AL6G17680 Arabidopsis lyrata HOM05D007228 ORTHO05D009099 4.2e-292 1007.7 660 79.2
AT5G07380 Arabidopsis thaliana HOM05D007228 ORTHO05D009099 9.3e-292 1006.5 663 78.9
Carub.0006s0635 Capsella rubella HOM05D007228 ORTHO05D009099 8.4e-285 983.4 663 77.4
Aa31LG3G18990 Aethionema arabicum HOM05D007228 ORTHO05D009099 8.5e-245 850.5 658 69.3
THA.LOC104819419 Tarenaya hassleriana HOM05D007228 ORTHO05D009099 7.3e-220 767.7 671 61.8
Ciclev10030919m.g Citrus clementina HOM05D007228 ORTHO05D009099 1.3e-205 720.3 662 57.3
Atru.chr6.1953 Acer truncatum HOM05D007228 ORTHO05D009099 1.1e-199 700.7 666 55.4
Cpa.g.sc13.201 Carica papaya HOM05D007228 ORTHO05D009099 4.3e-196 688.7 664 56.3
Duzib205G0703 Durio zibethinus HOM05D007228 ORTHO05D009099 7.3e-196 688.0 674 54.3
TWI39G0517 Tripterygium wilfordii HOM05D007228 ORTHO05D009099 9.5e-196 687.6 662 55.3
Gohir.D12G197500 Gossypium hirsutum HOM05D007228 ORTHO05D009099 8.9e-194 681.0 665 53.7
Manes.06G128600 Manihot esculenta HOM05D007228 ORTHO05D009099 3.9e-189 665.6 666 52.7
Potri.015G109700 Populus trichocarpa HOM05D007228 ORTHO05D009099 3.9e-189 665.6 665 53.4
Gohir.A12G195100 Gossypium hirsutum HOM05D007228 ORTHO05D009099 5.3e-186 655.2 649 53.3
Gorai.008G212000 Gossypium raimondii HOM05D007228 ORTHO05D009099 2.2e-184 649.8 644 53.3
Dinv13695 Davidia involucrata HOM05D007228 ORTHO05D009099 2.9e-184 649.4 674 52.4
QL10p000149 Quercus lobata HOM05D007228 ORTHO05D009099 1.6e-182 643.7 660 52.9
FvH4_5g10000 Fragaria vesca HOM05D007228 ORTHO05D009099 6.0e-182 641.7 666 51.5
FAN18G1110 Fragaria x ananassa HOM05D007228 ORTHO05D009099 1.6e-179 633.6 663 51.0
FAN04G0692 Fragaria x ananassa HOM05D007228 ORTHO05D009099 2.4e-175 619.8 653 50.8
MD06G1128600 Malus domestica HOM05D007228 ORTHO05D009099 2.4e-175 619.8 694 50.4
Lj4g0027006 Lotus japonicus HOM05D007228 ORTHO05D009099 7.9e-174 614.8 663 50.8
GSVIVG01014990001 Vitis vinifera HOM05D007228 ORTHO05D009099 2.3e-173 613.2 656 50.8
COL.COLO4_37286 Corchorus olitorius HOM05D007228 ORTHO05D009099 9.6e-172 607.8 662 49.7
Hma1.2p1_0338F.1_g129520 Hydrangea macrophylla HOM05D007228 ORTHO05D009099 1.3e-171 607.4 670 50.4
FAN08G0661 Fragaria x ananassa HOM05D007228 ORTHO05D009099 6.2e-171 605.1 650 51.1
Haze_07072 Corylus avellana HOM05D007228 ORTHO05D009099 2.2e-168 596.7 716 48.3
Glyma.08G006100 Glycine max HOM05D007228 ORTHO05D009099 1.4e-167 594.0 666 50.3
RcHm_v2.0_Chr7g0188261 Rosa chinensis HOM05D007228 ORTHO05D009099 6.0e-166 588.6 600 52.5
Ca_16830_v3 Cicer arietinum L. HOM05D007228 ORTHO05D009099 1.8e-165 587.0 667 48.9
Rhsim08G0200200 Rhododendron simsii HOM05D007228 ORTHO05D009099 3.7e-163 579.3 687 47.5
Solyc03g117990.1 Solanum lycopersicum HOM05D007228 ORTHO05D009099 3.7e-163 579.3 666 47.6
Medtr8g095540 Medicago truncatula HOM05D007228 ORTHO05D009099 6.2e-163 578.6 667 48.7
Sopen03g036890 Solanum pennellii HOM05D007228 ORTHO05D009099 2.4e-162 576.6 671 47.4
arahy.Tifrunner.gnm1.ann1.E4K3LT Arachis hypogaea HOM05D007228 ORTHO05D009099 1.3e-160 570.9 669 48.1
Peaxi162Scf00314g00833 Petunia axillaris HOM05D007228 ORTHO05D009099 1.9e-159 567.0 669 46.9
VMungo0251G0919 Vigna mungo HOM05D007228 ORTHO05D009099 2.5e-159 566.6 678 48.8
Manes.14G042701 Manihot esculenta HOM05D007228 ORTHO05D009099 4.2e-159 565.8 657 49.3
arahy.Tifrunner.gnm1.ann1.RK1GDQ Arachis hypogaea HOM05D007228 ORTHO05D009099 5.5e-159 565.5 669 47.8
Aqoxy5G02968 Aquilegia oxysepala HOM05D007228 ORTHO05D009099 1.5e-156 557.4 670 47.8
PSO017G4664 Papaver somniferum HOM05D007228 ORTHO05D009099 1.5e-156 557.4 765 43.9
PSO478G4831 Papaver somniferum HOM05D007228 ORTHO05D009099 1.4e-154 550.8 785 42.9
Actinidia18280 Actinidia chinensis HOM05D007228 ORTHO05D009099 2.9e-152 543.1 676 47.9
Psat7g040280 Pisum sativum HOM05D007228 ORTHO05D009099 1.9e-151 540.4 669 46.0
Phvul.002G279800 Phaseolus vulgaris HOM05D007228 ORTHO05D009099 1.2e-150 537.7 666 47.1
Cfa018687 Carpinus fangiana HOM05D007228 ORTHO05D009099 1.6e-150 537.3 487 55.0
Cc04_g05590 Coffea canephora HOM05D007228 ORTHO05D009099 4.6e-150 535.8 664 45.6
vmacro19097 Vaccinium macrocarpon HOM05D007228 ORTHO05D009099 3.9e-149 532.7 498 54.6
Sabra15G0131800 Salix brachista HOM05D007228 ORTHO05D009099 2.2e-147 526.9 594 49.2
Migut.D01167 Erythranthe guttata HOM05D007228 ORTHO05D009099 8.2e-147 525.0 673 45.2
ECA247G3190 Erigeron canadensis HOM05D007228 ORTHO05D009099 2.4e-146 523.5 602 48.3
Nitab4.5_0000976g0280 Nicotiana tabacum HOM05D007228 ORTHO05D009099 9.1e-146 521.5 654 44.8
Nitab4.5_0011883g0020 Nicotiana tabacum HOM05D007228 ORTHO05D009099 1.5e-145 520.8 673 44.7
Nn3g16198 Nelumbo nucifera HOM05D007228 ORTHO05D009099 1.7e-144 517.3 572 48.1
Prupe.5G138400 Prunus persica HOM05D007228 ORTHO05D009099 2.2e-144 516.9 546 51.8
SalBow1G3473 Salvia bowleyana HOM05D007228 ORTHO05D009099 1.1e-143 514.6 673 44.4
CAN.G1008.38 Capsicum annuum HOM05D007228 ORTHO05D009099 9.4e-143 511.5 680 43.4
Thecc.03G143400 Theobroma cacao HOM05D007228 ORTHO05D009099 1.6e-142 510.8 420 58.1
SGA_v2.0_scaffold515G52653 Striga asiatica HOM05D007228 ORTHO05D009099 2.2e-139 500.4 683 43.0
MBI11_g17279_MAGBIO Magnolia biondii HOM05D007228 ORTHO05D009099 2.8e-139 500.0 604 45.4
CSS0045118 Camellia sinensis var. sinensis HOM05D007228 ORTHO05D009099 5.9e-137 492.3 472 53.4
Sed0011749 Sechium edule HOM05D007228 ORTHO05D009099 4.2e-135 486.1 667 42.6
TAR629G1179 Trochodendron aralioides HOM05D007228 ORTHO05D009099 2.7e-134 483.4 461 53.1
Lsat_1_v5_gn_1_30460 Lactuca sativa HOM05D007228 ORTHO05D009099 1.1e-132 478.0 609 46.0
HanXRQChr08g0229031 Helianthus annuus HOM05D007228 ORTHO05D009099 4.1e-130 469.5 521 47.4
TPR.G12794 Trifolium pratense HOM05D007228 ORTHO05D009099 3.5e-129 466.5 569 46.4
ClCG07G006120 Citrullus lanatus HOM05D007228 ORTHO05D009099 5.2e-125 452.6 674 42.4
Lj9C489T6 Lonicera japonica HOM05D007228 ORTHO05D009099 3.7e-123 446.4 668 42.2
ATR0582G376 Amborella trichopoda HOM05D005651 ORTHO05D006877 5.3e-122 442.6 705 38.7
EL10Ac5g11261 Beta vulgaris HOM05D007228 ORTHO05D009099 2.7e-121 440.3 694 40.1
Zm00001eb334150 Zea mays HOM05D007228 ORTHO05D009099 5.9e-121 439.1 702 38.2
Eucgr.E04338 Eucalyptus grandis HOM05D007228 ORTHO05D009099 2.9e-120 436.8 673 39.4
PGR142G1350 Punica granatum HOM05D007228 ORTHO05D009099 3.2e-119 433.3 723 37.9
Os01g0103900 Oryza sativa ssp. japonica HOM05D007228 ORTHO05D009099 6.1e-118 429.1 483 47.2
CsaV3_5G013390 Cucumis sativus L. HOM05D007228 ORTHO05D009099 2.2e-115 420.6 713 38.7
MELO3C018355.2 Cucumis melo HOM05D007228 ORTHO05D009099 1.1e-111 408.3 598 41.3
AUR62036968 Chenopodium quinoa HOM05D007228 ORTHO05D009099 1.5e-103 381.3 685 35.6
Sc04g0000080 Simmondsia chinensis HOM05D007228 ORTHO05D009099 4.1e-98 363.2 515 41.7
Sc04g0000120 Simmondsia chinensis HOM05D007228 ORTHO05D009099 7.0e-98 362.5 515 41.7
Hund02521 Selenicereus undatus HOM05D007228 ORTHO05D009099 2.0e-97 360.9 814 32.8
Ah.02g114480 Amaranthus hybridus HOM05D003541 ORTHO05D004095 5.8e-92 342.8 657 37.3
AUR62032199 Chenopodium quinoa HOM05D007228 ORTHO05D009099 1.7e-83 314.7 713 32.5
SEGI_11491 Sequoiadendron giganteum HOM05D007228 ORTHO05D009099 7.1e-82 309.3 470 38.3
PGSC0003DMG400014227 Solanum tuberosum HOM05D007228 ORTHO05D009099 8.7e-72 275.8 388 44.3
CSS0001938 Camellia sinensis var. sinensis HOM05D007228 ORTHO05D009099 1.1e-71 275.4 262 53.1
Lalb_Chr12g0202641 Lupinus albus HOM05D007228 ORTHO05D009099 1.1e-69 268.9 255 53.7
unitig_747.g21316 Utricularia gibba HOM05D002839 ORTHO05D003349 2.2e-67 261.2 520 34.4
SMO119G0281 Selaginella moellendorffii HOM05D007228 ORTHO05D009099 1.1e-66 258.8 540 31.5
GSVIVG01035283001 Vitis vinifera HOM05D007228 ORTHO05D009099 1.9e-63 248.1 257 51.4
Sp6g35490 Schrenkiella parvula HOM05D007228 ORTHO05D009099 2.1e-62 244.6 153 87.6
HPP92_021579 Vanilla planifolia HOM05D007228 ORTHO05D009099 6.5e-51 206.5 386 36.8
Psat0s3642g0120 Pisum sativum HOM05D007228 ORTHO05D009099 1.8e-45 188.3 395 33.4
Lalb_Chr12g0202651 Lupinus albus HOM05D007228 ORTHO05D009099 1.2e-44 185.7 197 48.2
Psat3g128520 Pisum sativum HOM05D007228 ORTHO05D009099 3.2e-42 177.6 358 34.6
AagrBONN_evm.TU.Sc2ySwM_344.3780 Anthoceros agrestis HOM05D007228 ORTHO05D009099 1.0e-35 156.0 417 29.3
TPR.G21492 Trifolium pratense HOM05D007228 ORTHO05D009099 5.0e-35 153.7 196 42.9
Medtr4g061370 Medicago truncatula HOM05D000876 ORTHO05D000285 2.5e-34 151.4 169 46.2
Psat0s5010g0080 Pisum sativum HOM05D005021 ORTHO05D006824 2.5e-34 151.4 173 43.9
AL468U10020 Arabidopsis lyrata HOM05D007228 ORTHO05D009099 9.7e-31 139.4 84 77.4
AUR62009120 Chenopodium quinoa HOM05D007228 ORTHO05D009099 3.7e-30 137.5 476 27.1
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 8.5e-27 126.3 116 49.1
MSTRG.9383 Avicennia marina HOM05D007228 ORTHO05D009099 2.6e-20 104.8 210 38.6
CDE06G2808 Ceratophyllum demersum HOM05D007228 ORTHO05D009099 4.5e-20 104.0 113 42.5
HanXRQChr08g0229021 Helianthus annuus HOM05D007228 ORTHO05D009099 2.3e-16 91.7 140 48.6
Lalb_Chr12g0202661 Lupinus albus HOM05D007228 ORTHO05D009099 5.2e-16 90.5 175 40.0
HPP92_021580 Vanilla planifolia HOM05D007228 ORTHO05D009099 4.8e-14 84.0 151 34.4
AL6G43550 Arabidopsis lyrata HOM05D001764 ORTHO05D079172 6.5e-11 73.6 152 30.9
CDE02G0692 Ceratophyllum demersum HOM05D007228 ORTHO05D009099 3.0e-08 64.7 94 36.2


User provided reference genes

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