Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g32428 Brassica carinata HOM05D007846 ORTHO05D010837 2.2e-75 285.8 172 100.0
C09p69640 Brassica napus HOM05D007846 ORTHO05D010837 2.2e-75 285.8 172 100.0
BolC9t59707H Brassica oleracea HOM05D007846 ORTHO05D010837 2.2e-75 285.8 172 100.0
A10p29250 Brassica napus HOM05D007846 ORTHO05D010837 3.8e-67 258.5 176 91.5
BraA10t44971Z Brassica rapa HOM05D007846 ORTHO05D010837 3.8e-67 258.5 176 91.5
BcaC06g32486 Brassica carinata HOM05D007846 ORTHO05D010837 7.8e-57 224.2 154 84.4
BolC8t49462H Brassica oleracea HOM05D007846 ORTHO05D010837 4.0e-37 158.7 156 65.4
C08p18270 Brassica napus HOM05D007846 ORTHO05D010837 2.0e-36 156.4 156 64.7
Sp6g35350 Schrenkiella parvula HOM05D007846 ORTHO05D010837 1.7e-35 153.3 140 67.1
BraA08t34994Z Brassica rapa HOM05D007846 ORTHO05D010837 6.5e-35 151.4 154 64.3
Carub.0006s0650 Capsella rubella HOM05D007846 ORTHO05D010837 5.3e-29 131.7 150 56.0
BraA02t04921Z Brassica rapa HOM05D007846 ORTHO05D010837 3.2e-26 122.5 159 53.5
AL6G17830 Arabidopsis lyrata HOM05D007846 ORTHO05D010837 9.3e-26 120.9 161 52.8
BcaC03g13199 Brassica carinata HOM05D007846 ORTHO05D010837 1.2e-25 120.6 156 55.1
C02p03150 Brassica napus HOM05D007846 ORTHO05D010837 1.2e-25 120.6 156 55.1
BolC2t06277H Brassica oleracea HOM05D007846 ORTHO05D010837 1.2e-25 120.6 156 55.1
AT5G07520 Arabidopsis thaliana HOM05D007846 ORTHO05D010837 2.7e-25 119.4 164 53.0
C09p69650 Brassica napus HOM05D007846 ORTHO05D010837 7.4e-23 111.3 160 51.9
BolC9t59708H Brassica oleracea HOM05D007846 ORTHO05D010837 7.4e-23 111.3 160 51.9
AL6G17910 Arabidopsis lyrata HOM05D007846 ORTHO05D010837 1.2e-20 104.0 126 57.9
Thhalv10014560m.g Eutrema salsugineum HOM05D007846 ORTHO05D010837 1.5e-20 103.6 157 51.6
BcaC06g32487 Brassica carinata HOM05D007846 ORTHO05D010837 2.2e-19 99.8 84 70.2
BcaB01g05692 Brassica carinata HOM05D007846 ORTHO05D010837 3.8e-19 99.0 92 67.4
A03p03350 Brassica napus HOM05D007846 ORTHO05D010837 3.8e-19 99.0 100 65.0
BcaB01g06047 Brassica carinata HOM05D007846 ORTHO05D010837 6.5e-19 98.2 100 64.0
C03p03790 Brassica napus HOM05D007846 ORTHO05D010837 6.5e-19 98.2 100 64.0
BcaB01g06046 Brassica carinata HOM05D007846 ORTHO05D010837 2.5e-18 96.3 90 65.6
BolC3t12914H Brassica oleracea HOM05D007846 ORTHO05D010837 2.5e-18 96.3 90 65.6
Carub.0006s0658 Capsella rubella HOM05D007846 ORTHO05D010837 2.5e-18 96.3 160 45.0
Aa31LG3G18890 Aethionema arabicum HOM05D007846 ORTHO05D010837 3.2e-18 95.9 150 44.7
AL6G17840 Arabidopsis lyrata HOM05D007846 ORTHO05D010837 3.2e-18 95.9 150 50.0
BcaB01g06048 Brassica carinata HOM05D007846 ORTHO05D010837 3.2e-18 95.9 86 68.6
AT5G07530 Arabidopsis thaliana HOM05D007846 ORTHO05D010837 9.4e-18 94.4 149 47.7
Carub.0006s0651 Capsella rubella HOM05D007846 ORTHO05D010837 2.1e-17 93.2 160 46.2
AT5G07600 Arabidopsis thaliana HOM05D007846 ORTHO05D010837 1.4e-16 90.5 186 41.9
Sp6g35330 Schrenkiella parvula HOM05D007846 ORTHO05D021761 3.3e-15 85.9 90 56.7
A03p03340 Brassica napus HOM05D007846 ORTHO05D010837 7.4e-15 84.7 90 60.0
BraA03t09686Z Brassica rapa HOM05D007846 ORTHO05D010837 7.4e-15 84.7 90 60.0
CARHR205620 Cardamine hirsuta HOM05D007846 ORTHO05D010837 4.8e-14 82.0 90 55.6
A10p29260 Brassica napus HOM05D007846 ORTHO05D010837 1.1e-13 80.9 154 42.9
BraA10t44972Z Brassica rapa HOM05D007846 ORTHO05D010837 1.1e-13 80.9 154 42.9
Thhalv10013795m.g Eutrema salsugineum HOM05D007846 ORTHO05D195878 1.4e-13 80.5 90 61.1
AT5G07540 Arabidopsis thaliana HOM05D007846 ORTHO05D031404 1.8e-13 80.1 121 47.9
Carub.0006s0653 Capsella rubella HOM05D007846 ORTHO05D000624 1.8e-13 80.1 89 51.7
AL6G17850 Arabidopsis lyrata HOM05D007846 ORTHO05D031404 9.1e-13 77.8 135 45.2
BcaB05g21610 Brassica carinata HOM05D007846 ORTHO05D010837 1.2e-12 77.4 86 57.0
BcaC06g32488 Brassica carinata HOM05D021341 ORTHO05D093304 1.5e-12 77.0 67 68.7
Thhalv10014587m.g Eutrema salsugineum HOM05D007846 ORTHO05D010837 2.0e-12 76.6 145 46.2
Thhalv10015090m.g Eutrema salsugineum HOM05D007846 ORTHO05D000624 3.4e-12 75.9 83 56.6
AT5G07550 Arabidopsis thaliana HOM05D007846 ORTHO05D000624 1.0e-11 74.3 89 48.3
CARHR205610 Cardamine hirsuta HOM05D007846 ORTHO05D000624 1.0e-11 74.3 83 49.4
C09p69670 Brassica napus HOM05D007846 ORTHO05D021761 2.2e-11 73.2 90 51.1
BolC9t59710H Brassica oleracea HOM05D007846 ORTHO05D021761 2.2e-11 73.2 90 51.1
AT5G07510 Arabidopsis thaliana HOM05D007846 ORTHO05D038626 2.9e-11 72.8 85 54.1
Thhalv10015089m.g Eutrema salsugineum HOM05D000805 ORTHO05D000624 2.9e-11 72.8 83 54.2
Sp6g35340 Schrenkiella parvula HOM05D007846 ORTHO05D371621 3.8e-11 72.4 90 57.8
AL6G17860 Arabidopsis lyrata HOM05D007846 ORTHO05D000624 8.5e-11 71.2 89 46.1
BcaC06g32424 Brassica carinata HOM05D007846 ORTHO05D021761 1.1e-10 70.9 85 51.8
A10p29300 Brassica napus HOM05D007846 ORTHO05D021761 1.4e-10 70.5 90 51.1
BraA10t44974Z Brassica rapa HOM05D007846 ORTHO05D021761 1.4e-10 70.5 90 51.1
BolC3t12915H Brassica oleracea HOM05D000805 ORTHO05D000624 1.9e-10 70.1 85 49.4
Sp6g35320 Schrenkiella parvula HOM05D000805 ORTHO05D000624 1.9e-10 70.1 80 55.0
Sp6g35310 Schrenkiella parvula HOM05D007846 ORTHO05D000624 2.5e-10 69.7 83 49.4
AL6G17810 Arabidopsis lyrata HOM05D007846 ORTHO05D038626 3.2e-10 69.3 157 40.8
C03p03800 Brassica napus HOM05D000805 ORTHO05D000624 4.2e-10 68.9 85 48.2
BcaB01g06049 Brassica carinata HOM05D007846 ORTHO05D000624 5.5e-10 68.6 79 51.9
BraA02t04922Z Brassica rapa HOM05D007846 ORTHO05D010837 7.2e-10 68.2 90 50.0
BraA03t09687Z Brassica rapa HOM05D000805 ORTHO05D000624 7.2e-10 68.2 85 48.2
C02p03180 Brassica napus HOM05D007846 ORTHO05D010837 1.6e-09 67.0 90 51.1
BolC2t06280H Brassica oleracea HOM05D007846 ORTHO05D010837 1.6e-09 67.0 90 51.1
BcaC03g13197 Brassica carinata HOM05D007846 ORTHO05D010837 2.7e-09 66.2 86 52.3
A03p03360 Brassica napus HOM05D000805 ORTHO05D000624 2.7e-09 66.2 85 47.1
A10p29310 Brassica napus HOM05D007846 ORTHO05D023961 3.6e-09 65.9 76 53.9
BraA10t44975Z Brassica rapa HOM05D007846 ORTHO05D023961 3.6e-09 65.9 76 53.9
BcaC06g32423 Brassica carinata HOM05D007846 ORTHO05D023961 8.0e-09 64.7 76 52.6
C09p69680 Brassica napus HOM05D007846 ORTHO05D023961 8.0e-09 64.7 76 52.6
BolC9t59711H Brassica oleracea HOM05D007846 ORTHO05D023961 8.0e-09 64.7 76 52.6
AL6G17870 Arabidopsis lyrata HOM05D007846 ORTHO05D012592 1.4e-08 63.9 89 43.8
CARHR205600 Cardamine hirsuta HOM05D007846 ORTHO05D012592 1.4e-08 63.9 81 46.9
Aa31LG3G18860 Aethionema arabicum HOM05D007846 ORTHO05D000624 1.8e-08 63.5 78 46.2
BcaC07g38876 Brassica carinata HOM05D007846 ORTHO05D091870 1.8e-08 63.5 70 55.7
Carub.0006s0652 Capsella rubella HOM05D007846 ORTHO05D031404 2.3e-08 63.2 86 47.7
AT5G07560 Arabidopsis thaliana HOM05D007846 ORTHO05D012592 8.8e-08 61.2 83 45.8
BraA02t04924Z Brassica rapa HOM05D007846 ORTHO05D012592 8.8e-08 61.2 108 38.0
CARHR205580 Cardamine hirsuta HOM05D007846 ORTHO05D012592 1.1e-07 60.8 71 50.7
C02p03200 Brassica napus HOM05D007846 ORTHO05D012592 1.5e-07 60.5 99 40.4
BolC2t06282H Brassica oleracea HOM05D007846 ORTHO05D012592 1.5e-07 60.5 99 40.4
BcaC06g32490 Brassica carinata HOM05D007846 ORTHO05D000624 2.0e-07 60.1 111 44.1
Thhalv10014500m.g Eutrema salsugineum HOM05D000805 ORTHO05D012592 2.6e-07 59.7 80 45.0
Sp6g35300 Schrenkiella parvula HOM05D000805 ORTHO05D012592 2.6e-07 59.7 86 41.9
Thhalv10015579m.g Eutrema salsugineum HOM05D000805 ORTHO05D196068 4.4e-07 58.9 80 42.5
Sp2g24820 Schrenkiella parvula HOM05D013628 ORTHO05D015917 1.3e-06 57.4 79 44.3
BcaB05g21609 Brassica carinata HOM05D000805 ORTHO05D012592 1.7e-06 57.0 80 43.8
A03p03370 Brassica napus HOM05D000805 ORTHO05D012592 1.7e-06 57.0 66 53.0
A10p29270 Brassica napus HOM05D021341 ORTHO05D024077 2.8e-06 56.2 46 71.7
BraA10t44973Z Brassica rapa HOM05D021341 ORTHO05D024077 2.8e-06 56.2 46 71.7
Carub.0006s0654 Capsella rubella HOM05D000805 ORTHO05D012592 3.7e-06 55.8 76 47.4
BolC3t12917H Brassica oleracea HOM05D000805 ORTHO05D012592 4.8e-06 55.5 77 44.2
BcaC06g32425 Brassica carinata HOM05D021341 ORTHO05D024077 6.3e-06 55.1 68 54.4
C09p69660 Brassica napus HOM05D021341 ORTHO05D024077 6.3e-06 55.1 68 54.4
BolC9t59709H Brassica oleracea HOM05D021341 ORTHO05D024077 6.3e-06 55.1 68 54.4
BraA02t04923Z Brassica rapa HOM05D000805 ORTHO05D012592 8.2e-06 54.7 82 40.2
ECA233G2751 Erigeron canadensis HOM05D000805 ORTHO05D000624 8.2e-06 54.7 81 40.7


User provided reference genes

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