Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g32421 Brassica carinata HOM05D006663 ORTHO05D008269 2.2e-63 245.4 117 100.0
C09p69700 Brassica napus HOM05D006663 ORTHO05D008269 2.9e-63 245.0 116 100.0
BolC9t59713H Brassica oleracea HOM05D006663 ORTHO05D008269 2.9e-63 245.0 116 100.0
AL6G17900 Arabidopsis lyrata HOM05D006663 ORTHO05D008269 1.2e-16 90.1 40 100.0
AT5G07590 Arabidopsis thaliana HOM05D006663 ORTHO05D008269 1.2e-16 90.1 40 100.0
A10p29330 Brassica napus HOM05D006663 ORTHO05D008269 1.2e-16 90.1 40 100.0
Thhalv10013487m.g Eutrema salsugineum HOM05D006663 ORTHO05D008269 1.2e-16 90.1 40 100.0
Sp6g35280 Schrenkiella parvula HOM05D006663 ORTHO05D008269 1.2e-16 90.1 40 100.0
THA.LOC104801603 Tarenaya hassleriana HOM05D006663 ORTHO05D008269 1.6e-16 89.7 40 97.5
Aa31LG3G18830 Aethionema arabicum HOM05D006663 ORTHO05D008269 2.7e-16 89.0 40 97.5
BcaC06g32493 Brassica carinata HOM05D006663 ORTHO05D008269 4.6e-16 88.2 40 97.5
Carub.0006s0657 Capsella rubella HOM05D006663 ORTHO05D008269 1.0e-15 87.0 40 95.0
CARHR205560 Cardamine hirsuta HOM05D006663 ORTHO05D008269 5.1e-15 84.7 40 95.0
Potri.001G079100 Populus trichocarpa HOM05D006663 ORTHO05D008269 2.5e-14 82.4 40 90.0
Potri.003G151400 Populus trichocarpa HOM05D006663 ORTHO05D008269 2.5e-14 82.4 40 90.0
Sabra03G0109600 Salix brachista HOM05D006663 ORTHO05D008269 2.5e-14 82.4 40 90.0
Haze_22195 Corylus avellana HOM05D006663 ORTHO05D008269 5.6e-14 81.3 40 87.5
MD01G1177500 Malus domestica HOM05D006663 ORTHO05D008269 5.6e-14 81.3 40 87.5
MD07G1249200 Malus domestica HOM05D006663 ORTHO05D008269 5.6e-14 81.3 40 87.5
Prupe.2G272800 Prunus persica HOM05D006663 ORTHO05D008269 5.6e-14 81.3 40 87.5
RcHm_v2.0_Chr1g0373701 Rosa chinensis HOM05D006663 ORTHO05D008269 5.6e-14 81.3 40 87.5
Thecc.03G149200 Theobroma cacao HOM05D006663 ORTHO05D008269 5.6e-14 81.3 40 87.5
Atru.chr1.907 Acer truncatum HOM05D006663 ORTHO05D008269 9.5e-14 80.5 40 87.5
Manes.14G038500 Manihot esculenta HOM05D006663 ORTHO05D008269 9.5e-14 80.5 40 87.5
CANSAT56G2550 Cannabis sativa HOM05D006663 ORTHO05D008269 1.2e-13 80.1 40 85.0
CANSAT56G3894 Cannabis sativa HOM05D006663 ORTHO05D008269 1.2e-13 80.1 40 85.0
Cpa.g.sc13.257 Carica papaya HOM05D006663 ORTHO05D008269 1.2e-13 80.1 40 85.0
COL.COLO4_37343 Corchorus olitorius HOM05D006663 ORTHO05D008269 1.2e-13 80.1 40 87.5
Gohir.A03G137100 Gossypium hirsutum HOM05D006663 ORTHO05D008269 1.2e-13 80.1 40 85.0
Gohir.A07G166700 Gossypium hirsutum HOM05D006663 ORTHO05D008269 1.2e-13 80.1 40 85.0
Gohir.A09G003500 Gossypium hirsutum HOM05D006663 ORTHO05D008269 1.2e-13 80.1 40 85.0
Gohir.A09G080000 Gossypium hirsutum HOM05D006663 ORTHO05D008269 1.2e-13 80.1 40 85.0
Gohir.A12G196700 Gossypium hirsutum HOM05D006663 ORTHO05D008269 1.2e-13 80.1 40 85.0
Gohir.D04G037700 Gossypium hirsutum HOM05D006663 ORTHO05D008269 1.2e-13 80.1 40 85.0
Gohir.D09G034800 Gossypium hirsutum HOM05D006663 ORTHO05D008269 1.2e-13 80.1 40 85.0
Gorai.008G214300 Gossypium raimondii HOM05D006663 ORTHO05D008269 1.2e-13 80.1 40 85.0
CiPaw.07G185300 Carya illinoinensis HOM05D006663 ORTHO05D008269 1.6e-13 79.7 40 85.0
FvH4_7g26970 Fragaria vesca HOM05D006663 ORTHO05D008269 1.6e-13 79.7 40 85.0
FAN06G1593 Fragaria x ananassa HOM05D006663 ORTHO05D008269 1.6e-13 79.7 40 85.0
FAN06G2606 Fragaria x ananassa HOM05D006663 ORTHO05D008269 1.6e-13 79.7 40 85.0
FAN10G3253 Fragaria x ananassa HOM05D006663 ORTHO05D008269 1.6e-13 79.7 40 85.0
PGR042G0458 Punica granatum HOM05D006663 ORTHO05D008269 1.6e-13 79.7 40 85.0
QL09p027994 Quercus lobata HOM05D006663 ORTHO05D008269 1.6e-13 79.7 40 85.0
EL10Ac7g15901 Beta vulgaris HOM05D006663 ORTHO05D008269 2.8e-13 79.0 40 82.5
CsaV3_5G004880 Cucumis sativus L. HOM05D006663 ORTHO05D008269 2.8e-13 79.0 40 82.5
PSO675G3877 Papaver somniferum HOM05D006663 ORTHO05D008269 2.8e-13 79.0 40 85.0
PSO732G0765 Papaver somniferum HOM05D006663 ORTHO05D008269 2.8e-13 79.0 40 85.0
arahy.Tifrunner.gnm1.ann1.78X8E3 Arachis hypogaea HOM05D006663 ORTHO05D008269 3.6e-13 78.6 40 82.5
arahy.Tifrunner.gnm1.ann1.JS0B2B Arachis hypogaea HOM05D006663 ORTHO05D008269 3.6e-13 78.6 40 82.5
TWI39G0071 Tripterygium wilfordii HOM05D006663 ORTHO05D008269 3.6e-13 78.6 40 80.0
MELO3C005467.2 Cucumis melo HOM05D006663 ORTHO05D008269 4.7e-13 78.2 40 80.0
Sc10g0004730 Simmondsia chinensis HOM05D006663 ORTHO05D008269 4.7e-13 78.2 40 85.0
Sabra01G0056700 Salix brachista HOM05D006663 ORTHO05D008269 6.2e-13 77.8 40 85.0
FAN03G0477 Fragaria x ananassa HOM05D006663 ORTHO05D008269 8.1e-13 77.4 40 82.5
Lj5g0020638 Lotus japonicus HOM05D006663 ORTHO05D008269 1.1e-12 77.0 40 80.0
Phvul.007G136100 Phaseolus vulgaris HOM05D006663 ORTHO05D008269 1.1e-12 77.0 40 80.0
VMungo0720G2856 Vigna mungo HOM05D006663 ORTHO05D008269 1.1e-12 77.0 40 80.0
ClCG01G004680 Citrullus lanatus HOM05D006663 ORTHO05D008269 1.4e-12 76.6 40 77.5
Glyma.20G195600 Glycine max HOM05D006663 ORTHO05D008269 1.4e-12 76.6 40 80.0
Sed0007931 Sechium edule HOM05D006663 ORTHO05D008269 1.4e-12 76.6 40 77.5
AUR62001890 Chenopodium quinoa HOM05D006663 ORTHO05D008269 1.8e-12 76.3 40 80.0
AUR62009686 Chenopodium quinoa HOM05D006663 ORTHO05D008269 1.8e-12 76.3 40 80.0
Nn1g00884 Nelumbo nucifera HOM05D006663 ORTHO05D008269 1.8e-12 76.3 40 82.5
Eucgr.A02922 Eucalyptus grandis HOM05D006663 ORTHO05D008269 2.3e-12 75.9 40 80.0
HanXRQChr05g0138181 Helianthus annuus HOM05D006663 ORTHO05D008269 2.3e-12 75.9 40 80.0
TAR636G2266 Trochodendron aralioides HOM05D006663 ORTHO05D008269 2.3e-12 75.9 40 82.5
Ciclev10004937m.g Citrus clementina HOM05D006663 ORTHO05D008269 5.2e-12 74.7 40 80.0
Glyma.10G194400 Glycine max HOM05D006663 ORTHO05D008269 5.2e-12 74.7 40 77.5
Hma1.2p1_1580F.1_g291900 Hydrangea macrophylla HOM05D006663 ORTHO05D008269 8.9e-12 73.9 40 80.0
SHI14080 Sapria himalayana HOM05D006663 ORTHO05D008269 1.2e-11 73.6 40 80.0
Hund24931 Selenicereus undatus HOM05D006663 ORTHO05D008269 1.2e-11 73.6 40 77.5
GSVIVG01013975001 Vitis vinifera HOM05D006663 ORTHO05D008269 1.2e-11 73.6 40 77.5
CSS0030206 Camellia sinensis var. sinensis HOM05D006663 ORTHO05D008269 1.5e-11 73.2 40 77.5
CSS0049195 Camellia sinensis var. sinensis HOM05D006663 ORTHO05D008269 1.5e-11 73.2 40 77.5
Dinv06596 Davidia involucrata HOM05D006663 ORTHO05D008269 1.5e-11 73.2 40 77.5
Os10g0563300 Oryza sativa ssp. japonica HOM05D006663 ORTHO05D008269 1.5e-11 73.2 40 77.5
DCAR_020172 Daucus carota HOM05D006663 ORTHO05D008269 2.0e-11 72.8 40 80.0
Lj1C976T20 Lonicera japonica HOM05D006663 ORTHO05D008269 2.0e-11 72.8 40 77.5
Lsat_1_v5_gn_8_9600 Lactuca sativa HOM05D006663 ORTHO05D008269 2.6e-11 72.4 40 75.0
TPR.G13385 Trifolium pratense HOM05D006663 ORTHO05D008269 2.6e-11 72.4 40 80.0
Actinidia13608 Actinidia chinensis HOM05D006663 ORTHO05D008269 3.4e-11 72.0 40 75.0
Ca_10369_v3 Cicer arietinum L. HOM05D006663 ORTHO05D008269 5.8e-11 71.2 40 80.0
Ca_10419_v3 Cicer arietinum L. HOM05D006663 ORTHO05D008269 5.8e-11 71.2 40 80.0
Aqoxy7G00844 Aquilegia oxysepala HOM05D006663 ORTHO05D008269 9.9e-11 70.5 40 75.0
Oeu042534.1 Olea europaea HOM05D006663 ORTHO05D008269 9.9e-11 70.5 40 75.0
Medtr1g090310 Medicago truncatula HOM05D006663 ORTHO05D008269 1.7e-10 69.7 40 77.5
Lalb_Chr02g0150831 Lupinus albus HOM05D006663 ORTHO05D008269 2.2e-10 69.3 40 77.5
ATR0057G058 Amborella trichopoda HOM05D006663 ORTHO05D008269 3.7e-10 68.6 40 72.5
MSTRG.8846 Avicennia marina HOM05D006663 ORTHO05D008269 3.7e-10 68.6 40 72.5
Psat0s1505g0040 Pisum sativum HOM05D006663 ORTHO05D008269 3.7e-10 68.6 40 75.0
HPP92_025692 Vanilla planifolia HOM05D006663 ORTHO05D008269 4.9e-10 68.2 40 75.0
Cc02_g04690 Coffea canephora HOM05D006663 ORTHO05D008269 1.1e-09 67.0 40 70.0
Migut.F00523 Erythranthe guttata HOM05D006663 ORTHO05D008269 1.1e-09 67.0 40 70.0
Peaxi162Scf00271g00618 Petunia axillaris HOM05D006663 ORTHO05D008269 1.1e-09 67.0 40 75.0
Zm00001eb325360 Zea mays HOM05D006663 ORTHO05D008269 1.4e-09 66.6 40 67.5
Rhsim03G0161500 Rhododendron simsii HOM05D006663 ORTHO05D008269 1.9e-09 66.2 40 67.5
vmacro06835 Vaccinium macrocarpon HOM05D006663 ORTHO05D008269 1.9e-09 66.2 40 70.0
ECA233G2092 Erigeron canadensis HOM05D006663 ORTHO05D008269 4.1e-09 65.1 36 77.8
Pp3c13_8720 Physcomitrium patens HOM05D006663 ORTHO05D008269 5.4e-09 64.7 40 65.0
SalBow3G3051 Salvia bowleyana HOM05D006663 ORTHO05D008269 5.4e-09 64.7 40 67.5
SEGI_30026 Sequoiadendron giganteum HOM05D006663 ORTHO05D008269 9.2e-09 63.9 40 67.5
Solyc03g093490.3 Solanum lycopersicum HOM05D006663 ORTHO05D008269 9.2e-09 63.9 40 72.5
Sopen03g024320 Solanum pennellii HOM05D006663 ORTHO05D008269 9.2e-09 63.9 40 72.5
PGSC0003DMG400010747 Solanum tuberosum HOM05D006663 ORTHO05D008269 9.2e-09 63.9 40 72.5
AagrBONN_evm.TU.Sc2ySwM_228.1080 Anthoceros agrestis HOM05D006663 ORTHO05D008269 1.2e-08 63.5 40 65.0
Nitab4.5_0007080g0010 Nicotiana tabacum HOM05D006663 ORTHO05D008269 1.2e-08 63.5 40 70.0
Nitab4.5_0021979g0010 Nicotiana tabacum HOM05D006663 ORTHO05D008269 1.2e-08 63.5 40 70.0
SGA_v2.0_scaffold60G20812 Striga asiatica HOM05D006663 ORTHO05D008269 1.2e-08 63.5 40 65.0
Mapoly0178s0015 Marchantia polymorpha HOM05D006663 ORTHO05D008269 3.5e-08 62.0 40 65.0
Pp3c3_11450 Physcomitrium patens HOM05D006663 ORTHO05D008269 4.6e-08 61.6 40 62.5
SMO340G0268 Selaginella moellendorffii HOM05D006663 ORTHO05D008269 6.6e-07 57.8 40 60.0
CBR_g49329 Chara braunii HOM05D006663 ORTHO05D008269 5.6e-06 54.7 40 52.5


User provided reference genes

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