Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g32419 Brassica carinata HOM05D004498 ORTHO05D005300 2.0e-192 675.6 345 100.0
BcaC06g32495 Brassica carinata HOM05D004498 ORTHO05D005300 2.0e-107 393.3 431 55.7
BraA10t44979Z Brassica rapa HOM05D004498 ORTHO05D005300 1.0e-103 380.9 433 55.0
A10p29360 Brassica napus HOM05D004498 ORTHO05D005300 1.3e-103 380.6 433 55.0
BcaB05g21603 Brassica carinata HOM05D004498 ORTHO05D005300 1.2e-99 367.5 432 52.1
BcaC03g13193 Brassica carinata HOM05D004498 ORTHO05D005300 2.8e-98 362.8 432 51.4
C02p03220 Brassica napus HOM05D004498 ORTHO05D005300 8.0e-93 344.7 189 91.0
BolC2t06286H Brassica oleracea HOM05D004498 ORTHO05D005300 8.0e-93 344.7 189 91.0
Aa31LG3G18790 Aethionema arabicum HOM05D004498 ORTHO05D005300 2.3e-92 343.2 406 52.5
BraA02t04927Z Brassica rapa HOM05D004498 ORTHO05D005300 5.2e-92 342.0 189 91.0
AL6G17950 Arabidopsis lyrata HOM05D004498 ORTHO05D005300 2.2e-90 336.7 408 51.2
Thhalv10013248m.g Eutrema salsugineum HOM05D004498 ORTHO05D005300 1.2e-88 330.9 187 90.4
Carub.0006s0661 Capsella rubella HOM05D004498 ORTHO05D005300 6.5e-87 325.1 431 47.8
AT5G07630 Arabidopsis thaliana HOM05D004498 ORTHO05D005300 4.2e-86 322.4 430 47.4
Sp6g35240 Schrenkiella parvula HOM05D004498 ORTHO05D005300 5.5e-86 322.0 188 87.8
THA.LOC104819414 Tarenaya hassleriana HOM05D004498 ORTHO05D005300 9.8e-83 311.2 408 47.3
Carub.0003s0947 Capsella rubella HOM05D004498 ORTHO05D005300 6.6e-79 298.5 432 45.8
Manes.06G133200 Manihot esculenta HOM05D004498 ORTHO05D005300 7.5e-75 285.0 421 42.8
Potri.001G126200 Populus trichocarpa HOM05D004498 ORTHO05D005300 2.2e-74 283.5 431 42.0
AL3G21620 Arabidopsis lyrata HOM05D004498 ORTHO05D005300 8.3e-74 281.6 193 77.7
Cfa008145 Carpinus fangiana HOM05D004498 ORTHO05D005300 7.0e-73 278.5 410 43.2
CSS0042388 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 1.6e-72 277.3 409 41.3
Ciclev10004737m.g Citrus clementina HOM05D004498 ORTHO05D005300 2.7e-72 276.6 431 41.5
QL09p005249 Quercus lobata HOM05D004498 ORTHO05D005300 4.6e-72 275.8 184 74.5
TWI23G0902 Tripterygium wilfordii HOM05D004498 ORTHO05D005300 4.6e-72 275.8 431 41.3
Atru.chr1.817 Acer truncatum HOM05D004498 ORTHO05D005300 1.3e-71 274.2 184 73.9
Ca_02786_v3 Cicer arietinum L. HOM05D004498 ORTHO05D005300 1.3e-71 274.2 410 42.4
Actinidia24991 Actinidia chinensis HOM05D004498 ORTHO05D005300 2.3e-71 273.5 188 72.3
Hma1.2p1_0432F.1_g151900 Hydrangea macrophylla HOM05D004498 ORTHO05D005300 1.1e-70 271.2 431 40.1
Manes.14G037200 Manihot esculenta HOM05D004498 ORTHO05D005300 1.1e-70 271.2 184 73.9
CiPaw.03G020300 Carya illinoinensis HOM05D004498 ORTHO05D005300 1.9e-70 270.4 183 74.3
Psat6g142360 Pisum sativum HOM05D004498 ORTHO05D005300 1.9e-70 270.4 184 72.3
Psat6g116600 Pisum sativum HOM05D004498 ORTHO05D005300 5.6e-70 268.9 184 72.3
Medtr4g036550 Medicago truncatula HOM05D004498 ORTHO05D005300 9.5e-70 268.1 186 71.0
Lj3g0015680 Lotus japonicus HOM05D004498 ORTHO05D005300 1.6e-69 267.3 410 42.0
Thecc.03G153100 Theobroma cacao HOM05D004498 ORTHO05D005300 2.1e-69 266.9 430 41.6
Lalb_Chr04g0258171 Lupinus albus HOM05D004498 ORTHO05D005300 2.8e-69 266.5 185 71.9
COL.COLO4_14097 Corchorus olitorius HOM05D004498 ORTHO05D005300 3.6e-69 266.2 182 74.2
Gohir.D12G200100 Gossypium hirsutum HOM05D004498 ORTHO05D005300 4.7e-69 265.8 183 74.3
Lsat_1_v5_gn_8_10281 Lactuca sativa HOM05D004498 ORTHO05D005300 4.7e-69 265.8 187 69.5
TPR.G3665 Trifolium pratense HOM05D004498 ORTHO05D005300 4.7e-69 265.8 410 41.7
Gorai.008G215300 Gossypium raimondii HOM05D004498 ORTHO05D005300 1.1e-68 264.6 183 73.8
Sopen05g030080 Solanum pennellii HOM05D004498 ORTHO05D005300 1.1e-68 264.6 195 69.7
AUR62038145 Chenopodium quinoa HOM05D004498 ORTHO05D005300 1.8e-68 263.8 210 66.2
Gohir.A12G197600 Gossypium hirsutum HOM05D004498 ORTHO05D005300 1.8e-68 263.8 218 67.0
Solyc05g051630.4 Solanum lycopersicum HOM05D004498 ORTHO05D005300 1.8e-68 263.8 437 40.5
arahy.Tifrunner.gnm1.ann1.V9VPQR Arachis hypogaea HOM05D004498 ORTHO05D005300 2.3e-68 263.5 184 71.2
Migut.D02110 Erythranthe guttata HOM05D004498 ORTHO05D005300 4.0e-68 262.7 188 71.3
Sc15g0000230 Simmondsia chinensis HOM05D004498 ORTHO05D005300 4.0e-68 262.7 188 68.1
ClCG07G016840 Citrullus lanatus HOM05D004498 ORTHO05D005300 5.2e-68 262.3 217 62.2
ECA233G4878 Erigeron canadensis HOM05D004498 ORTHO05D005300 6.8e-68 261.9 428 39.3
HanXRQChr05g0142551 Helianthus annuus HOM05D004498 ORTHO05D005300 6.8e-68 261.9 187 70.1
Actinidia13585 Actinidia chinensis HOM05D004498 ORTHO05D005300 8.9e-68 261.5 188 68.6
CAN.G937.4 Capsicum annuum HOM05D004498 ORTHO05D005300 1.2e-67 261.2 428 40.2
Phvul.011G007100 Phaseolus vulgaris HOM05D004498 ORTHO05D005300 1.2e-67 261.2 184 72.3
AUR62009833 Chenopodium quinoa HOM05D004498 ORTHO05D005300 2.6e-67 260.0 189 69.8
Sed0003630 Sechium edule HOM05D004498 ORTHO05D005300 3.4e-67 259.6 206 65.0
Migut.A00970 Erythranthe guttata HOM05D004498 ORTHO05D005300 5.8e-67 258.8 188 70.7
Migut.G01103 Erythranthe guttata HOM05D004498 ORTHO05D005300 5.8e-67 258.8 188 70.7
PSO210G0611 Papaver somniferum HOM05D004498 ORTHO05D005300 5.8e-67 258.8 186 69.9
Glyma.09G230400 Glycine max HOM05D004498 ORTHO05D005300 1.3e-66 257.7 184 71.7
CsaV3_4G004040 Cucumis sativus L. HOM05D004498 ORTHO05D005300 2.9e-66 256.5 198 66.7
Rhsim03G0165600 Rhododendron simsii HOM05D004498 ORTHO05D005300 2.9e-66 256.5 192 68.8
Aqoxy3G03912 Aquilegia oxysepala HOM05D004498 ORTHO05D005300 4.9e-66 255.8 194 67.5
Glyma.12G006200 Glycine max HOM05D004498 ORTHO05D005300 4.9e-66 255.8 175 75.4
FvH4_3g41750 Fragaria vesca HOM05D004498 ORTHO05D005300 8.3e-66 255.0 183 71.6
PSO210G1345 Papaver somniferum HOM05D004498 ORTHO05D005300 8.3e-66 255.0 186 68.3
BolC9t59715H Brassica oleracea HOM05D004498 ORTHO05D005300 2.4e-65 253.4 441 42.2
Cc02_g04430 Coffea canephora HOM05D004498 ORTHO05D005300 3.2e-65 253.1 185 67.6
Prupe.6G033300 Prunus persica HOM05D004498 ORTHO05D005300 7.0e-65 251.9 184 68.5
Eucgr.G03077 Eucalyptus grandis HOM05D004498 ORTHO05D005300 1.6e-64 250.8 430 38.4
TAR375G0984 Trochodendron aralioides HOM05D004498 ORTHO05D005300 1.6e-64 250.8 184 68.5
unitig_578.g16611 Utricularia gibba HOM05D004498 ORTHO05D005300 2.0e-64 250.4 188 66.0
RcHm_v2.0_Chr5g0074831 Rosa chinensis HOM05D004498 ORTHO05D005300 3.5e-64 249.6 183 69.4
BcaNung06188 Brassica carinata HOM05D004498 ORTHO05D005300 8.6e-63 245.0 132 92.4
FAN11G1420 Fragaria x ananassa HOM05D004498 ORTHO05D005300 1.2e-61 241.1 198 64.6
MD11G1042200 Malus domestica HOM05D004498 ORTHO05D005300 1.2e-61 241.1 184 67.9
C09p69720 Brassica napus HOM05D004498 ORTHO05D005300 3.6e-61 239.6 441 40.6
Sabra01G0097300 Salix brachista HOM05D004498 ORTHO05D005300 4.7e-61 239.2 258 51.6
Peaxi162Scf00167g00733 Petunia axillaris HOM05D004498 ORTHO05D005300 2.0e-59 233.8 210 60.5
EL10Ac7g16351 Beta vulgaris HOM05D004498 ORTHO05D005300 4.4e-59 232.6 233 54.9
arahy.Tifrunner.gnm1.ann1.LBI7WJ Arachis hypogaea HOM05D004498 ORTHO05D005300 2.9e-58 229.9 158 74.1
Migut.G01109 Erythranthe guttata HOM05D004498 ORTHO05D005300 1.1e-57 228.0 160 71.2
GSVIVG01014038001 Vitis vinifera HOM05D004498 ORTHO05D005300 1.4e-57 227.6 182 62.1
FAN16G2392 Fragaria x ananassa HOM05D004498 ORTHO05D005300 2.4e-57 226.9 183 64.5
FAN21G3639 Fragaria x ananassa HOM05D004498 ORTHO05D005300 2.4e-57 226.9 218 56.4
Nitab4.5_0000818g0240 Nicotiana tabacum HOM05D004498 ORTHO05D005300 2.4e-57 226.9 237 54.0
Zm00001eb105090 Zea mays HOM05D004498 ORTHO05D005300 6.0e-56 222.2 197 57.4
Nitab4.5_0001187g0110 Nicotiana tabacum HOM05D004498 ORTHO05D005300 1.7e-55 220.7 195 60.5
HPP92_003455 Vanilla planifolia HOM05D004498 ORTHO05D005300 5.6e-54 215.7 194 56.7
Dinv06575 Davidia involucrata HOM05D004498 ORTHO05D005300 2.1e-53 213.8 333 41.1
Ah.15g094140 Amaranthus hybridus HOM05D004498 ORTHO05D005300 1.2e-51 208.0 193 56.0
GSVIVG01037114001 Vitis vinifera HOM05D004498 ORTHO05D005300 1.3e-50 204.5 185 57.8
Migut.G01144 Erythranthe guttata HOM05D004498 ORTHO05D005300 8.4e-50 201.8 135 79.3
Nitab4.5_0002764g0030 Nicotiana tabacum HOM05D004498 ORTHO05D005300 1.4e-49 201.1 172 61.6
PGR119G0143 Punica granatum HOM05D004498 ORTHO05D005300 1.4e-49 201.1 155 64.5
ATR0745G086 Amborella trichopoda HOM05D004498 ORTHO05D005300 1.9e-49 200.7 173 60.7
Nitab4.5_0003647g0080 Nicotiana tabacum HOM05D004498 ORTHO05D005300 7.1e-49 198.7 179 58.7
Dinv16848 Davidia involucrata HOM05D004498 ORTHO05D005300 1.2e-48 198.0 186 56.5
SHI13988 Sapria himalayana HOM05D004498 ORTHO05D005300 1.2e-48 198.0 183 55.2
FAN25G1514 Fragaria x ananassa HOM05D004498 ORTHO05D005300 5.1e-47 192.6 221 50.7
Lj8A44G33 Lonicera japonica HOM05D004498 ORTHO05D005300 4.3e-46 189.5 121 78.5
SalBow7G0508 Salvia bowleyana HOM05D004498 ORTHO05D005300 9.6e-46 188.3 368 37.2
CDE02G4122 Ceratophyllum demersum HOM05D004498 ORTHO05D005300 1.5e-43 181.0 136 68.4
Duzib084G1021 Durio zibethinus HOM05D004498 ORTHO05D005300 2.4e-41 173.7 363 36.6
vmacro22807 Vaccinium macrocarpon HOM05D004498 ORTHO05D005300 3.9e-39 166.4 107 75.7
MELO3C017661.2 Cucumis melo HOM05D004498 ORTHO05D005300 8.7e-39 165.2 104 79.8
DCAR_009449 Daucus carota HOM05D004498 ORTHO05D005300 8.7e-39 165.2 439 29.8
Pp3c18_8280 Physcomitrium patens HOM05D004498 ORTHO05D005300 8.7e-39 165.2 208 44.7
Hund20838 Selenicereus undatus HOM05D004498 ORTHO05D005300 3.3e-38 163.3 192 50.5
Nn1g09651 Nelumbo nucifera HOM05D004498 ORTHO05D005300 4.3e-38 162.9 120 70.8
Mapoly0124s0016 Marchantia polymorpha HOM05D004498 ORTHO05D005300 1.1e-36 158.3 190 49.5
PGSC0003DMG401007235 Solanum tuberosum HOM05D004498 ORTHO05D005300 1.8e-36 157.5 97 82.5
SGA_v2.0_scaffold115G32141 Striga asiatica HOM05D004498 ORTHO05D005300 1.2e-35 154.8 409 29.6
AagrBONN_evm.TU.Sc2ySwM_362.1167 Anthoceros agrestis HOM05D004498 ORTHO05D005300 3.4e-35 153.3 192 44.8
SMO200G0031 Selaginella moellendorffii HOM05D004498 ORTHO05D005300 1.1e-33 148.3 193 44.0
Oeu042546.1 Olea europaea HOM05D004498 ORTHO05D005300 3.7e-29 133.3 141 53.2
Lj3g0020155 Lotus japonicus HOM05D004498 ORTHO05D005300 1.4e-25 121.3 95 68.4
SGA_v2.0_scaffold4035G54420 Striga asiatica HOM05D004498 ORTHO05D005300 1.9e-25 120.9 118 52.5
AagrBONN_evm.TU.Sc2ySwM_362.1160 Anthoceros agrestis HOM05D004498 ORTHO05D005300 3.5e-24 116.7 195 38.5
SGA_v2.0_scaffold92G28289 Striga asiatica HOM05D004498 ORTHO05D005300 6.7e-23 112.5 292 30.5
SEGI_08016 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 2.1e-21 107.5 132 45.5
SEGI_20600 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 2.1e-21 107.5 132 45.5
Cre11.g467726 Chlamydomonas reinhardtii HOM05D004498 ORTHO05D005300 1.1e-20 105.1 131 41.2
SalBow8G0163 Salvia bowleyana HOM05D004498 ORTHO05D005300 3.4e-19 100.1 62 83.9
SalBow8G4260 Salvia bowleyana HOM05D004498 ORTHO05D005300 3.4e-19 100.1 62 83.9
vmacro22806 Vaccinium macrocarpon HOM05D004498 ORTHO05D005300 4.6e-16 89.7 67 59.7
CARHR205520 Cardamine hirsuta HOM05D004498 ORTHO05D005300 6.0e-16 89.4 48 83.3
SEGI_20056 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 7.9e-16 89.0 54 74.1
Sabra03G0074300 Salix brachista HOM05D004498 ORTHO05D005300 2.8e-13 80.5 50 74.0
PRCOL_00001376 Prasinoderma coloniale HOM05D004498 ORTHO05D005300 3.7e-13 80.1 169 33.7
Rhsim07G0010100 Rhododendron simsii HOM05D004498 ORTHO05D005300 3.7e-13 80.1 62 66.1
CSS0021260 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 6.3e-13 79.3 50 80.0
Nn1g09635 Nelumbo nucifera HOM05D004498 ORTHO05D005300 1.4e-12 78.2 65 55.4
PGSC0003DMG402007235 Solanum tuberosum HOM05D004498 ORTHO05D005300 1.8e-12 77.8 70 51.4
SalBow7G0435 Salvia bowleyana HOM05D004498 ORTHO05D005300 2.4e-12 77.4 96 42.7
PGR142G0681 Punica granatum HOM05D004498 ORTHO05D005300 5.3e-12 76.3 82 53.7
CSS0021614 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 3.8e-10 70.1 50 58.0
Oeu022469.1 Olea europaea HOM05D004498 ORTHO05D005300 1.4e-09 68.2 51 58.8
CSS0024530 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 2.5e-09 67.4 56 55.4
SEGI_28281 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 2.7e-08 63.9 48 52.1
Rhsim07G0010200 Rhododendron simsii HOM05D004498 ORTHO05D005300 1.4e-07 61.6 74 43.2
arahy.Tifrunner.gnm1.ann1.BI5KXL Arachis hypogaea HOM05D004498 ORTHO05D005300 2.3e-07 60.8 49 57.1
arahy.Tifrunner.gnm1.ann1.XAT8RN Arachis hypogaea HOM05D004498 ORTHO05D005300 2.3e-07 60.8 49 57.1


User provided reference genes

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