Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g32392 Brassica carinata HOM05D003436 ORTHO05D003674 9.2e-60 233.8 160 100.0
C09p69990 Brassica napus HOM05D003436 ORTHO05D003674 3.5e-59 231.9 160 99.4
BolC9t59741H Brassica oleracea HOM05D003436 ORTHO05D003674 3.5e-59 231.9 160 99.4
A10p29610 Brassica napus HOM05D003436 ORTHO05D003674 2.5e-57 225.7 160 97.5
BraA10t45003Z Brassica rapa HOM05D003436 ORTHO05D003674 2.5e-57 225.7 160 97.5
BcaC06g32544 Brassica carinata HOM05D003436 ORTHO05D003674 2.8e-48 195.7 160 88.1
BcaB01g06002 Brassica carinata HOM05D003436 ORTHO05D003674 3.6e-48 195.3 162 85.8
CARHR206420 Cardamine hirsuta HOM05D003436 ORTHO05D003674 7.6e-46 187.6 160 85.0
Thhalv10014897m.g Eutrema salsugineum HOM05D003436 ORTHO05D003674 2.2e-45 186.0 161 83.2
A03p02880 Brassica napus HOM05D003436 ORTHO05D003674 3.2e-44 182.2 161 80.7
BraA03t09652Z Brassica rapa HOM05D003436 ORTHO05D003674 3.2e-44 182.2 161 80.7
C03p03280 Brassica napus HOM05D003436 ORTHO05D003674 5.4e-44 181.4 160 74.4
Aa31sc24G30 Aethionema arabicum HOM05D003436 ORTHO05D003674 7.1e-44 181.0 163 65.6
C03p03320 Brassica napus HOM05D003436 ORTHO05D003674 3.5e-43 178.7 162 75.3
BolC3t12875H Brassica oleracea HOM05D003436 ORTHO05D003674 3.5e-43 178.7 162 75.3
AT5G06760 Arabidopsis thaliana HOM05D003436 ORTHO05D003674 4.6e-43 178.3 161 82.6
BcaB01g06022 Brassica carinata HOM05D003436 ORTHO05D003674 8.7e-42 174.1 162 75.3
Sp6g36090 Schrenkiella parvula HOM05D003436 ORTHO05D003674 2.5e-41 172.6 162 80.2
BcaB01g06026 Brassica carinata HOM05D003436 ORTHO05D003674 5.6e-41 171.4 162 74.7
AL6G16870 Arabidopsis lyrata HOM05D003436 ORTHO05D003674 4.4e-38 161.8 161 79.5
Carub.0006s0565 Capsella rubella HOM05D003436 ORTHO05D003674 2.3e-34 149.4 146 80.8
Migut.J01829 Erythranthe guttata HOM05D003436 ORTHO05D003674 2.8e-32 142.5 161 56.5
Ciclev10012978m.g Citrus clementina HOM05D003436 ORTHO05D003674 5.4e-28 128.3 160 50.0
Sed0015125 Sechium edule HOM05D003436 ORTHO05D003674 5.4e-28 128.3 178 49.4
ClCG04G002110 Citrullus lanatus HOM05D003436 ORTHO05D003674 1.2e-27 127.1 163 50.9
FAN02G3232 Fragaria x ananassa HOM05D003436 ORTHO05D003674 1.6e-27 126.7 169 49.7
RcHm_v2.0_Chr3g0479771 Rosa chinensis HOM05D003436 ORTHO05D003674 2.1e-27 126.3 168 53.0
THA.LOC104826769 Tarenaya hassleriana HOM05D003436 ORTHO05D003674 2.7e-27 125.9 161 56.5
MELO3C008930.2 Cucumis melo HOM05D003436 ORTHO05D003674 7.9e-27 124.4 159 49.7
Oeu033740.1 Olea europaea HOM05D003436 ORTHO05D003674 1.3e-26 123.6 162 50.0
Phvul.001G143100 Phaseolus vulgaris HOM05D003436 ORTHO05D003674 1.3e-26 123.6 159 49.7
CsaV3_4G030630 Cucumis sativus L. HOM05D003436 ORTHO05D003674 2.3e-26 122.9 160 50.0
MD12G1057800 Malus domestica HOM05D003436 ORTHO05D003674 2.3e-26 122.9 159 50.3
Peaxi162Scf00258g00520 Petunia axillaris HOM05D003436 ORTHO05D003674 2.3e-26 122.9 160 51.2
Glyma.19G147200 Glycine max HOM05D003436 ORTHO05D003674 3.9e-26 122.1 164 48.2
Cpa.g.sc85.72 Carica papaya HOM05D003436 ORTHO05D003674 8.7e-26 120.9 158 53.2
TWI74G0976 Tripterygium wilfordii HOM05D003436 ORTHO05D003674 3.3e-25 119.0 151 50.3
Glyma.03G144400 Glycine max HOM05D003436 ORTHO05D003674 7.4e-25 117.9 159 47.2
Medtr7g093170 Medicago truncatula HOM05D003436 ORTHO05D003674 7.4e-25 117.9 172 58.1
Nitab4.5_0008334g0020 Nicotiana tabacum HOM05D003436 ORTHO05D003674 1.3e-24 117.1 160 49.4
Peaxi162Scf00003g04347 Petunia axillaris HOM05D003436 ORTHO05D003674 3.7e-24 115.5 156 48.7
VMungo1383G0252 Vigna mungo HOM05D003436 ORTHO05D003674 6.2e-24 114.8 160 48.1
Dinv14293 Davidia involucrata HOM05D003436 ORTHO05D003674 8.1e-24 114.4 154 50.0
HanXRQChr05g0132881 Helianthus annuus HOM05D003436 ORTHO05D003674 1.1e-23 114.0 160 47.5
ECA236G0475 Erigeron canadensis HOM05D000402 ORTHO05D000263 2.4e-23 112.8 149 49.7
TWI53G0478 Tripterygium wilfordii HOM05D003436 ORTHO05D003674 4.0e-23 112.1 151 48.3
Nitab4.5_0001538g0030 Nicotiana tabacum HOM05D003436 ORTHO05D003674 6.9e-23 111.3 160 46.9
FvH4_6g22410 Fragaria vesca HOM05D003436 ORTHO05D003674 4.5e-22 108.6 169 50.9
FAN14G5712 Fragaria x ananassa HOM05D003436 ORTHO05D003674 4.5e-22 108.6 166 47.0
Prupe.7G076400 Prunus persica HOM05D003436 ORTHO05D003674 5.8e-22 108.2 159 49.1
Ca_08518_v3 Cicer arietinum L. HOM05D003436 ORTHO05D003674 7.6e-22 107.8 160 44.4
CANSAT64G0020 Cannabis sativa HOM05D003436 ORTHO05D003674 1.3e-21 107.1 164 46.3
Nitab4.5_0000324g0100 Nicotiana tabacum HOM05D003436 ORTHO05D003674 1.3e-21 107.1 160 49.4
PSO339G4457 Papaver somniferum HOM05D003436 ORTHO05D003674 1.7e-21 106.7 156 48.1
Psat3g068920 Pisum sativum HOM05D003436 ORTHO05D003674 1.7e-21 106.7 181 48.6
Nitab4.5_0000105g0070 Nicotiana tabacum HOM05D003436 ORTHO05D003674 2.9e-21 105.9 160 45.6
SGA_v2.0_scaffold105G30485 Striga asiatica HOM05D003436 ORTHO05D003674 3.8e-21 105.5 134 49.3
Thecc.05G170800 Theobroma cacao HOM05D003436 ORTHO05D003674 4.9e-21 105.1 164 46.3
Gohir.D01G178300 Gossypium hirsutum HOM05D003436 ORTHO05D003674 9.3e-20 100.9 161 47.8
Gorai.002G224800 Gossypium raimondii HOM05D003436 ORTHO05D003674 9.3e-20 100.9 161 47.8
Eucgr.K01836 Eucalyptus grandis HOM05D003436 ORTHO05D003674 2.1e-19 99.8 151 47.7
Gohir.A01G191700 Gossypium hirsutum HOM05D003436 ORTHO05D003674 4.6e-19 98.6 164 47.0
Aqoxy7G03903 Aquilegia oxysepala HOM05D003436 ORTHO05D003674 6.0e-19 98.2 150 46.7
Potri.016G046350 Populus trichocarpa HOM05D003436 ORTHO05D003674 6.0e-19 98.2 165 43.6
BolC3t12872H Brassica oleracea HOM05D003436 ORTHO05D003674 2.3e-18 96.3 95 68.4
arahy.Tifrunner.gnm1.ann1.6M6V4C Arachis hypogaea HOM05D003436 ORTHO05D003674 5.1e-18 95.1 164 42.1
Lj1g0001300 Lotus japonicus HOM05D003436 ORTHO05D003674 6.7e-18 94.7 160 49.4
ATR0605G384 Amborella trichopoda HOM05D003436 ORTHO05D003674 1.1e-17 94.0 158 44.9
COL.COLO4_33990 Corchorus olitorius HOM05D011887 ORTHO05D003674 1.5e-17 93.6 164 42.7
Lj5g0013312 Lotus japonicus HOM05D003436 ORTHO05D003674 1.5e-17 93.6 169 40.2
Sc19g0007020 Simmondsia chinensis HOM05D003436 ORTHO05D003674 1.5e-17 93.6 165 44.2
Lalb_Chr15g0078981 Lupinus albus HOM05D003436 ORTHO05D003674 1.9e-17 93.2 166 47.6
Phvul.001G142000 Phaseolus vulgaris HOM05D003436 ORTHO05D003674 3.3e-17 92.4 116 49.1
Ca_25707_v3 Cicer arietinum L. HOM05D003436 ORTHO05D003674 5.6e-17 91.7 170 41.8
Medtr7g093140 Medicago truncatula HOM05D003436 ORTHO05D003674 2.1e-16 89.7 66 74.2
Actinidia22034 Actinidia chinensis HOM05D003436 ORTHO05D003674 2.8e-16 89.4 91 56.0
DCAR_013554 Daucus carota HOM05D003436 ORTHO05D003674 2.8e-16 89.4 168 43.5
Ah.08g210350 Amaranthus hybridus HOM05D003436 ORTHO05D003674 3.7e-16 89.0 168 48.8
arahy.Tifrunner.gnm1.ann1.BAUA8N Arachis hypogaea HOM05D003436 ORTHO05D003674 4.8e-16 88.6 158 41.8
Medtr7g093160 Medicago truncatula HOM05D003436 ORTHO05D003674 6.2e-16 88.2 66 72.7
TPR.G27745 Trifolium pratense HOM05D003436 ORTHO05D003674 6.2e-16 88.2 75 61.3
Peaxi162Scf00003g04337 Petunia axillaris HOM05D003436 ORTHO05D003674 1.1e-15 87.4 93 55.9
arahy.Tifrunner.gnm1.ann1.95S5ZX Arachis hypogaea HOM05D003436 ORTHO05D003674 1.4e-15 87.0 140 45.0
Dinv14294 Davidia involucrata HOM05D003436 ORTHO05D003674 2.4e-15 86.3 93 54.8
Manes.08G044900 Manihot esculenta HOM05D003436 ORTHO05D003674 2.4e-15 86.3 158 42.4
Oeu034263.1 Olea europaea HOM05D008970 ORTHO05D003674 2.4e-15 86.3 64 73.4
Sopen10g029400 Solanum pennellii HOM05D003436 ORTHO05D003674 2.4e-15 86.3 100 52.0
arahy.Tifrunner.gnm1.ann1.00VVAL Arachis hypogaea HOM05D003436 ORTHO05D003674 3.1e-15 85.9 140 45.0
unitig_899.g15079 Utricularia gibba HOM05D003436 ORTHO05D003674 3.1e-15 85.9 73 67.1
CAN.G1161.31 Capsicum annuum HOM05D003436 ORTHO05D003674 4.0e-15 85.5 73 65.8
Medtr1g053970 Medicago truncatula HOM05D003436 ORTHO05D003674 4.0e-15 85.5 174 40.2
Psat6g120960 Pisum sativum HOM05D003436 ORTHO05D003674 5.3e-15 85.1 70 64.3
Sed0019071 Sechium edule HOM05D003436 ORTHO05D003674 5.3e-15 85.1 155 48.4
VMungo1383G0066 Vigna mungo HOM05D003436 ORTHO05D003674 5.3e-15 85.1 65 67.7
QL07p023622 Quercus lobata HOM05D003436 ORTHO05D003674 6.9e-15 84.7 69 63.8
Cc06_g15980 Coffea canephora HOM05D003436 ORTHO05D003674 2.6e-14 82.8 159 42.8
SalBow1G8531 Salvia bowleyana HOM05D003436 ORTHO05D003674 4.5e-14 82.0 62 72.6
EL10Ac3g06923 Beta vulgaris HOM05D003436 ORTHO05D003674 7.6e-14 81.3 171 50.3
SalBow4G2804 Salvia bowleyana HOM05D003436 ORTHO05D003674 7.6e-14 81.3 68 64.7
MBI04_g39831_MAGBIO Magnolia biondii HOM05D003436 ORTHO05D003674 1.0e-13 80.9 153 41.8
Nitab4.5_0008334g0040 Nicotiana tabacum HOM05D003436 ORTHO05D003674 1.0e-13 80.9 71 64.8
PGSC0003DMG400011439 Solanum tuberosum HOM05D003436 ORTHO05D003674 1.0e-13 80.9 95 52.6
Nitab4.5_0000105g0110 Nicotiana tabacum HOM05D003436 ORTHO05D003674 1.3e-13 80.5 149 40.3
Sopen10g029380 Solanum pennellii HOM05D003436 ORTHO05D003674 1.7e-13 80.1 93 50.5
TWI77G0090 Tripterygium wilfordii HOM05D003436 ORTHO05D003674 1.7e-13 80.1 94 54.3
Atru.chr8.1096 Acer truncatum HOM05D003436 ORTHO05D003674 2.2e-13 79.7 93 49.5
Nn7g36015 Nelumbo nucifera HOM05D003436 ORTHO05D003674 2.2e-13 79.7 94 51.1
GSVIVG01033503001 Vitis vinifera HOM05D003436 ORTHO05D003674 2.2e-13 79.7 96 49.0
Lalb_Chr04g0261031 Lupinus albus HOM05D003436 ORTHO05D003674 2.9e-13 79.3 95 45.3
Psat0s797g0160 Pisum sativum HOM05D003436 ORTHO05D003674 2.9e-13 79.3 67 61.2
PGSC0003DMG400011437 Solanum tuberosum HOM05D003436 ORTHO05D003674 2.9e-13 79.3 93 51.6
GSVIVG01033505001 Vitis vinifera HOM05D003436 ORTHO05D003674 2.9e-13 79.3 162 40.7
Solyc10g078760.2 Solanum lycopersicum HOM05D003436 ORTHO05D003674 3.8e-13 79.0 93 49.5
Solyc10g078780.2 Solanum lycopersicum HOM05D003436 ORTHO05D003674 3.8e-13 79.0 73 57.5
MBI04_g14513_MAGBIO Magnolia biondii HOM05D003436 ORTHO05D003674 6.5e-13 78.2 73 60.3
VMungo0720G0768 Vigna mungo HOM05D003436 ORTHO05D003674 6.5e-13 78.2 73 56.2
Rhsim03G0006400 Rhododendron simsii HOM05D003436 ORTHO05D003674 8.4e-13 77.8 161 38.5
unitig_736.g22300 Utricularia gibba HOM05D000267 ORTHO05D000298 1.1e-12 77.4 95 50.5
CAN.G1161.29 Capsicum annuum HOM05D003436 ORTHO05D003674 1.9e-12 76.6 153 37.9
ECA236G0537 Erigeron canadensis HOM05D003436 ORTHO05D003674 1.9e-12 76.6 74 60.8
Sabra16G0050300 Salix brachista HOM05D003436 ORTHO05D003674 2.5e-12 76.3 67 62.7
Nitab4.5_0000324g0070 Nicotiana tabacum HOM05D003436 ORTHO05D003674 3.2e-12 75.9 67 62.7
Actinidia32389 Actinidia chinensis HOM05D003436 ORTHO05D003674 4.2e-12 75.5 98 53.1
CDE06G2670 Ceratophyllum demersum HOM05D003436 ORTHO05D003674 5.5e-12 75.1 98 48.0
AUR62015378 Chenopodium quinoa HOM05D003436 ORTHO05D003674 5.5e-12 75.1 176 41.5
Glyma.09G112100 Glycine max HOM05D003436 ORTHO05D003674 5.5e-12 75.1 99 46.5
Psat0s797g0240 Pisum sativum HOM05D003436 ORTHO05D003674 5.5e-12 75.1 67 59.7
Aqoxy6G00181 Aquilegia oxysepala HOM05D003436 ORTHO05D003674 7.1e-12 74.7 149 40.3
Lsat_1_v5_gn_8_75321 Lactuca sativa HOM05D003436 ORTHO05D003674 7.1e-12 74.7 94 53.2
Nitab4.5_0000105g0100 Nicotiana tabacum HOM05D003436 ORTHO05D003674 7.1e-12 74.7 62 67.7
AUR62012039 Chenopodium quinoa HOM05D003436 ORTHO05D003674 9.3e-12 74.3 179 36.3
THA.LOC104799298 Tarenaya hassleriana HOM05D003436 ORTHO05D003674 9.3e-12 74.3 167 53.9
Nitab4.5_0001538g0010 Nicotiana tabacum HOM05D003436 ORTHO05D003674 1.2e-11 73.9 61 65.6
Ca_05483_v3 Cicer arietinum L. HOM05D003436 ORTHO05D003674 2.7e-11 72.8 66 63.6
Aqoxy2G03681 Aquilegia oxysepala HOM05D003436 ORTHO05D003674 3.5e-11 72.4 60 66.7
Aqoxy7G02037 Aquilegia oxysepala HOM05D003436 ORTHO05D003674 3.5e-11 72.4 60 66.7
HanXRQChr02g0048381 Helianthus annuus HOM05D003436 ORTHO05D003674 4.6e-11 72.0 120 42.5
MSTRG.19903 Avicennia marina HOM05D003436 ORTHO05D003674 7.9e-11 71.2 161 42.2
Nitab4.5_0000105g0080 Nicotiana tabacum HOM05D003436 ORTHO05D003674 7.9e-11 71.2 62 64.5
PGSC0003DMG400011438 Solanum tuberosum HOM05D003436 ORTHO05D003674 7.9e-11 71.2 66 57.6
TPR.G27779 Trifolium pratense HOM05D003436 ORTHO05D003674 7.9e-11 71.2 132 42.4
DCAR_019788 Daucus carota HOM05D003436 ORTHO05D003674 1.0e-10 70.9 73 54.8
Nitab4.5_0002343g0050 Nicotiana tabacum HOM05D003436 ORTHO05D003674 1.0e-10 70.9 157 38.2
Dinv24076 Davidia involucrata HOM05D003436 ORTHO05D003674 1.8e-10 70.1 122 42.6
PSO017G1578 Papaver somniferum HOM05D003436 ORTHO05D003674 3.0e-10 69.3 55 67.3
Solyc10g078770.2 Solanum lycopersicum HOM05D003436 ORTHO05D003674 3.9e-10 68.9 68 54.4
Sopen10g029390 Solanum pennellii HOM05D003436 ORTHO05D003674 3.9e-10 68.9 68 54.4
Aqoxy3G02738 Aquilegia oxysepala HOM05D003436 ORTHO05D003674 6.7e-10 68.2 58 65.5
ClCG10G017480 Citrullus lanatus HOM05D003436 ORTHO05D003674 8.7e-10 67.8 71 49.3
CAN.G1161.30 Capsicum annuum HOM05D003436 ORTHO05D003674 2.5e-09 66.2 65 55.4
CsaV3_3G038880 Cucumis sativus L. HOM05D003436 ORTHO05D003674 2.5e-09 66.2 74 50.0
HanXRQChr10g0300671 Helianthus annuus HOM05D003436 ORTHO05D003674 4.3e-09 65.5 89 47.2
Oeu007767.1 Olea europaea HOM05D003436 ORTHO05D003674 4.3e-09 65.5 66 60.6
MELO3C009631.2 Cucumis melo HOM05D003436 ORTHO05D003674 7.4e-09 64.7 71 47.9
Cc06_g15970 Coffea canephora HOM05D003436 ORTHO05D003674 1.3e-08 63.9 161 41.0
PSO170G2585 Papaver somniferum HOM05D003436 ORTHO05D003674 1.3e-08 63.9 47 70.2
Cfa020173 Carpinus fangiana HOM05D003436 ORTHO05D003674 2.8e-08 62.8 72 52.8
Sc19g0007030 Simmondsia chinensis HOM05D003436 ORTHO05D003674 3.7e-08 62.4 73 46.6
Haze_19983 Corylus avellana HOM05D003436 ORTHO05D003674 4.8e-08 62.0 71 52.1
Lsat_1_v5_gn_9_26540 Lactuca sativa HOM05D003436 ORTHO05D003674 4.8e-08 62.0 90 45.6
Actinidia32390 Actinidia chinensis HOM05D003436 ORTHO05D003674 1.1e-07 60.8 45 66.7
Phvul.007G259400 Phaseolus vulgaris HOM05D003436 ORTHO05D003674 1.4e-07 60.5 75 45.3
Peaxi162Scf00003g04336 Petunia axillaris HOM05D003436 ORTHO05D003674 2.4e-07 59.7 74 51.4
Haze_19981 Corylus avellana HOM05D003436 ORTHO05D003674 4.1e-07 58.9 68 51.5
ECA247G3621 Erigeron canadensis HOM05D003436 ORTHO05D003674 5.3e-07 58.5 42 73.8
Ah.13g075890 Amaranthus hybridus HOM05D003436 ORTHO05D003674 6.9e-07 58.2 73 45.2
vmacro07911 Vaccinium macrocarpon HOM05D003436 ORTHO05D003674 6.9e-07 58.2 155 34.8
Hma1.2p1_0386F.1_g141820 Hydrangea macrophylla HOM05D003436 ORTHO05D003674 9.0e-07 57.8 157 34.4
Manes.09G034800 Manihot esculenta HOM05D003436 ORTHO05D003674 9.0e-07 57.8 44 68.2
Cfa020175 Carpinus fangiana HOM05D003436 ORTHO05D003674 1.2e-06 57.4 82 45.1
Sed0013894 Sechium edule HOM05D003436 ORTHO05D003674 2.0e-06 56.6 74 47.3


User provided reference genes

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