Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g32369 Brassica carinata HOM05D004248 ORTHO05D004978 0.0e+00 1736.9 879 100.0
BolC9t59789H Brassica oleracea HOM05D004248 ORTHO05D004978 0.0e+00 1701.4 879 98.2
C09p70430 Brassica napus HOM05D004248 ORTHO05D004978 0.0e+00 1700.6 879 98.0
BraA10t45042Z Brassica rapa HOM05D004248 ORTHO05D004978 0.0e+00 1668.7 877 96.5
A10p30020 Brassica napus HOM05D004248 ORTHO05D004978 0.0e+00 1667.9 877 96.8
BcaNung06319 Brassica carinata HOM05D004248 ORTHO05D004978 0.0e+00 1537.3 878 89.3
Sp6g36500 Schrenkiella parvula HOM05D004248 ORTHO05D004978 0.0e+00 1456.4 880 83.8
Thhalv10012647m.g Eutrema salsugineum HOM05D004248 ORTHO05D004978 0.0e+00 1388.6 881 80.0
Carub.0006s0524 Capsella rubella HOM05D004248 ORTHO05D004978 0.0e+00 1338.6 881 77.4
AT5G06350 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 0.0e+00 1304.7 881 75.5
CARHR207090 Cardamine hirsuta HOM05D004248 ORTHO05D004978 0.0e+00 1289.6 880 74.2
AL6G38940 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 0.0e+00 1226.8 877 72.3
Aa31sc52G180 Aethionema arabicum HOM05D004248 ORTHO05D004978 0.0e+00 1214.1 902 70.0
AT5G27010 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 0.0e+00 1188.3 882 70.9
AL4G19610 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 0.0e+00 1083.2 890 67.1
THA.LOC104809952 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 7.8e-310 1067.0 875 62.4
BcaB02g11156 Brassica carinata HOM05D004248 ORTHO05D004978 4.3e-252 875.2 908 56.9
Thecc.05G104000 Theobroma cacao HOM05D004248 ORTHO05D004978 4.2e-239 832.0 884 51.0
Ciclev10011038m.g Citrus clementina HOM05D004248 ORTHO05D004978 7.2e-239 831.2 890 51.0
AL6G16430 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 4.6e-238 828.6 563 75.1
Gohir.A09G134400 Gossypium hirsutum HOM05D004248 ORTHO05D004978 6.5e-232 808.1 881 49.1
CiPaw.10G017100 Carya illinoinensis HOM05D004248 ORTHO05D004978 1.2e-230 803.9 884 48.9
Gohir.D09G130900 Gossypium hirsutum HOM05D004248 ORTHO05D004978 2.3e-229 799.7 881 48.6
Gorai.006G149600 Gossypium raimondii HOM05D004248 ORTHO05D004978 2.3e-229 799.7 881 48.6
Cfa020026 Carpinus fangiana HOM05D004248 ORTHO05D004978 8.2e-227 791.2 885 49.2
Atru.chr9.697 Acer truncatum HOM05D004248 ORTHO05D004978 3.5e-225 785.8 887 48.9
QL07p036804 Quercus lobata HOM05D004248 ORTHO05D004978 3.5e-225 785.8 882 48.4
Actinidia06045 Actinidia chinensis HOM05D004248 ORTHO05D004978 1.0e-221 774.2 898 46.9
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 8.2e-219 764.6 883 47.8
Actinidia37744 Actinidia chinensis HOM05D004248 ORTHO05D004978 2.4e-218 763.1 930 45.5
RcHm_v2.0_Chr3g0475871 Rosa chinensis HOM05D004248 ORTHO05D004978 3.1e-218 762.7 886 47.3
Sabra06G0156800 Salix brachista HOM05D004248 ORTHO05D004978 4.5e-217 758.8 854 48.8
Dinv31757 Davidia involucrata HOM05D004248 ORTHO05D004978 8.5e-216 754.6 894 46.8
RcHm_v2.0_Chr1g0331061 Rosa chinensis HOM05D004248 ORTHO05D004978 1.1e-215 754.2 886 46.8
FAN09G3200 Fragaria x ananassa HOM05D004248 ORTHO05D004978 7.2e-215 751.5 886 46.4
FAN14G1070 Fragaria x ananassa HOM05D004248 ORTHO05D004978 9.4e-215 751.1 881 46.8
vmacro07476 Vaccinium macrocarpon HOM05D004248 ORTHO05D004978 1.2e-214 750.7 891 47.0
CSS0019025 Camellia sinensis var. sinensis HOM05D004248 ORTHO05D004978 1.0e-213 747.7 884 45.7
FAN05G1094 Fragaria x ananassa HOM05D004248 ORTHO05D004978 1.0e-213 747.7 886 46.3
Manes.09G044700 Manihot esculenta HOM05D004248 ORTHO05D004978 3.0e-213 746.1 876 47.0
FAN05G4951 Fragaria x ananassa HOM05D004248 ORTHO05D004978 4.0e-213 745.7 886 46.2
Rhsim03G0064800 Rhododendron simsii HOM05D004248 ORTHO05D004978 6.8e-213 745.0 888 46.5
Potri.001G208900 Populus trichocarpa HOM05D004248 ORTHO05D004978 8.8e-213 744.6 884 46.7
MD10G1053900 Malus domestica HOM05D004248 ORTHO05D004978 4.4e-212 742.3 887 46.7
Manes.09G045100 Manihot esculenta HOM05D004248 ORTHO05D004978 7.5e-212 741.5 887 46.3
Potri.011G095700 Populus trichocarpa HOM05D004248 ORTHO05D004978 7.5e-212 741.5 884 46.6
Duzib093G0037 Durio zibethinus HOM05D004248 ORTHO05D004978 3.1e-210 736.1 747 52.2
CAN.G574.19 Capsicum annuum HOM05D004248 ORTHO05D004978 2.2e-208 729.9 892 45.4
Oeu052620.1 Olea europaea HOM05D004248 ORTHO05D004978 2.5e-207 726.5 892 45.2
Solyc01g007140.3 Solanum lycopersicum HOM05D004248 ORTHO05D004978 1.6e-206 723.8 889 45.1
Nn4g22932 Nelumbo nucifera HOM05D004248 ORTHO05D004978 6.1e-206 721.8 896 45.0
Sopen01g003120 Solanum pennellii HOM05D004248 ORTHO05D004978 1.4e-205 720.7 889 44.9
Phvul.008G104000 Phaseolus vulgaris HOM05D004248 ORTHO05D004978 6.8e-205 718.4 889 46.0
Haze_20188 Corylus avellana HOM05D004248 ORTHO05D004978 2.8e-203 713.0 886 47.2
DCAR_020706 Daucus carota HOM05D004248 ORTHO05D004978 3.1e-202 709.5 871 44.5
Eucgr.E01507 Eucalyptus grandis HOM05D004248 ORTHO05D004978 1.3e-200 704.1 887 45.7
Dinv05301 Davidia involucrata HOM05D004248 ORTHO05D004978 2.3e-200 703.4 754 49.9
Glyma.07G150100 Glycine max HOM05D004248 ORTHO05D004978 8.6e-200 701.4 887 45.4
Glyma.16G099100 Glycine max HOM05D004248 ORTHO05D004978 2.5e-199 699.9 887 45.2
Lj1g0019866 Lotus japonicus HOM05D004248 ORTHO05D004978 1.2e-198 697.6 888 45.3
FAN02G0498 Fragaria x ananassa HOM05D004248 ORTHO05D004978 2.3e-197 693.3 903 44.2
Lalb_Chr20g0111391 Lupinus albus HOM05D004248 ORTHO05D004978 2.0e-196 690.3 891 43.8
FvH4_6g20280 Fragaria vesca HOM05D004248 ORTHO05D004978 1.3e-195 687.6 838 44.6
Prupe.7G095000 Prunus persica HOM05D004248 ORTHO05D004978 6.3e-195 685.3 909 43.9
Haze_19699 Corylus avellana HOM05D004248 ORTHO05D004978 6.6e-192 675.2 938 43.8
HanXRQChr17g0549301 Helianthus annuus HOM05D004248 ORTHO05D004978 1.1e-191 674.5 877 41.8
arahy.Tifrunner.gnm1.ann1.ZDQ0NF Arachis hypogaea HOM05D004248 ORTHO05D004978 7.3e-191 671.8 872 44.7
MSTRG.5896 Avicennia marina HOM05D004248 ORTHO05D004978 7.3e-191 671.8 894 43.1
Psat3g029120 Pisum sativum HOM05D004248 ORTHO05D004978 1.2e-190 671.0 883 42.9
Sc22g0002860 Simmondsia chinensis HOM05D004248 ORTHO05D004978 1.2e-190 671.0 892 43.3
Medtr7g106190 Medicago truncatula HOM05D004248 ORTHO05D004978 2.1e-190 670.2 888 43.7
arahy.Tifrunner.gnm1.ann1.2W33L2 Arachis hypogaea HOM05D004248 ORTHO05D004978 4.7e-190 669.1 883 44.2
PSO017G5751 Papaver somniferum HOM05D004248 ORTHO05D004978 1.8e-189 667.2 889 41.6
VMungo0647G1936 Vigna mungo HOM05D004248 ORTHO05D004978 2.3e-189 666.8 889 43.4
PSO478G2311 Papaver somniferum HOM05D004248 ORTHO05D004978 6.8e-189 665.2 891 41.1
Cfa016679 Carpinus fangiana HOM05D004248 ORTHO05D004978 8.3e-187 658.3 856 45.4
MD12G1040000 Malus domestica HOM05D004248 ORTHO05D004978 2.4e-186 656.8 951 41.0
ECA247G2914 Erigeron canadensis HOM05D004248 ORTHO05D004978 4.6e-185 652.5 889 42.2
Sabra01G0161200 Salix brachista HOM05D004248 ORTHO05D004978 2.8e-182 643.3 873 42.5
EL10Ac5g12964 Beta vulgaris HOM05D004248 ORTHO05D004978 6.0e-177 625.5 896 39.8
SGA_v2.0_scaffold13G06632 Striga asiatica HOM05D004248 ORTHO05D004978 1.7e-176 624.0 955 39.5
AUR62036385 Chenopodium quinoa HOM05D004248 ORTHO05D004978 8.9e-173 611.7 888 39.8
Migut.J00705 Erythranthe guttata HOM05D004248 ORTHO05D004978 5.8e-172 609.0 891 40.7
TPR.G35565 Trifolium pratense HOM05D004248 ORTHO05D004978 3.2e-170 603.2 888 41.3
PGR004G2794 Punica granatum HOM05D004248 ORTHO05D004978 4.1e-170 602.8 893 40.5
Aqoxy3G00875 Aquilegia oxysepala HOM05D004248 ORTHO05D004978 9.2e-170 601.7 899 39.2
Atru.chr8.1370 Acer truncatum HOM05D004248 ORTHO05D004978 2.1e-169 600.5 731 45.7
Ca_26380_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 7.8e-169 598.6 864 41.6
AUR62030747 Chenopodium quinoa HOM05D004248 ORTHO05D004978 2.5e-167 593.6 912 38.4
Hma1.2p1_0079F.1_g041850 Hydrangea macrophylla HOM05D004248 ORTHO05D004978 1.6e-166 590.9 649 49.2
CANSAT01G1742 Cannabis sativa HOM05D004248 ORTHO05D004978 1.8e-165 587.4 893 40.3
Peaxi162Scf00586g00027 Petunia axillaris HOM05D004248 ORTHO05D004978 8.9e-165 585.1 830 40.6
Lsat_1_v5_gn_3_1160 Lactuca sativa HOM05D004248 ORTHO05D004978 1.3e-163 581.3 893 38.5
CsaV3_3G040150 Cucumis sativus L. HOM05D004248 ORTHO05D004978 2.7e-161 573.5 704 44.6
TWI74G1036 Tripterygium wilfordii HOM05D004248 ORTHO05D004978 3.5e-161 573.2 736 42.9
CDE05G1117 Ceratophyllum demersum HOM05D004248 ORTHO05D004978 5.1e-160 569.3 806 40.9
Sed0013531 Sechium edule HOM05D004248 ORTHO05D004978 3.1e-157 560.1 702 45.4
PGR044G2629 Punica granatum HOM05D004248 ORTHO05D004978 5.3e-157 559.3 891 40.0
Ca_09055_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 6.0e-153 545.8 863 39.6
HanXRQChr06g0164371 Helianthus annuus HOM05D004248 ORTHO05D004978 2.3e-152 543.9 944 35.8
BcaB02g11160 Brassica carinata HOM05D004248 ORTHO05D004978 1.1e-151 541.6 569 54.7
ClCG10G016230 Citrullus lanatus HOM05D004248 ORTHO05D004978 4.2e-146 523.1 713 42.8
RcHm_v2.0_Chr1g0331071 Rosa chinensis HOM05D004248 ORTHO05D004978 3.8e-139 500.0 669 42.2
HPP92_005875 Vanilla planifolia HOM05D004248 ORTHO05D004978 4.9e-139 499.6 705 41.8
MELO3C009754.2 Cucumis melo HOM05D004248 ORTHO05D004978 1.9e-138 497.7 702 42.3
GSVIVG01033953001 Vitis vinifera HOM05D004248 ORTHO05D004978 1.8e-133 481.1 630 41.9
Hund14947 Selenicereus undatus HOM05D004248 ORTHO05D004978 1.0e-131 475.3 889 33.6
Nitab4.5_0002858g0080 Nicotiana tabacum HOM05D004248 ORTHO05D004978 1.2e-124 451.8 677 40.3
PGR004G1886 Punica granatum HOM05D004248 ORTHO05D004978 4.6e-121 439.9 786 36.5
Os04g0466700 Oryza sativa ssp. japonica HOM05D004248 ORTHO05D004978 2.0e-116 424.5 890 33.8
Cpa.g.sc104.35 Carica papaya HOM05D004248 ORTHO05D004978 3.6e-113 413.7 551 43.6
Cc06_g06530 Coffea canephora HOM05D004248 ORTHO05D004978 1.1e-109 402.1 640 38.1
AL6G16420 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 5.2e-104 383.3 239 81.2
MBI13_g30330_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D003073 8.2e-102 375.9 787 30.6
Ah.01g014630 Amaranthus hybridus HOM05D004248 ORTHO05D004978 3.8e-99 367.1 698 33.2
unitig_8.g3983 Utricularia gibba HOM05D004248 ORTHO05D004978 8.0e-89 332.8 755 33.1
GSVIVG01033954001 Vitis vinifera HOM05D004248 ORTHO05D004978 9.2e-85 319.3 260 62.7
Oeu036626.1 Olea europaea HOM05D004248 ORTHO05D004978 2.5e-82 311.2 240 63.8
Nitab4.5_0000020g0020 Nicotiana tabacum HOM05D004248 ORTHO05D004978 6.8e-80 303.1 239 63.2
Mapoly0023s0084 Marchantia polymorpha HOM05D004248 ORTHO05D004978 3.0e-75 287.7 960 27.0
Zm00001eb080310 Zea mays HOM05D004248 ORTHO05D004978 2.5e-74 284.6 740 30.0
Medtr5g027350 Medicago truncatula HOM05D004248 ORTHO05D004978 5.8e-71 273.5 813 28.3
Pp3c26_11250 Physcomitrium patens HOM05D004248 ORTHO05D004978 2.2e-70 271.6 959 27.6
Pp3c26_11260 Physcomitrium patens HOM05D004248 ORTHO05D004978 2.2e-70 271.6 959 27.6
THA.LOC104824536 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 3.9e-67 260.8 222 57.7
Cpa.g.sc104.34 Carica papaya HOM05D004248 ORTHO05D004978 1.5e-66 258.8 193 66.8
Cc06_g06540 Coffea canephora HOM05D004248 ORTHO05D004978 5.2e-64 250.4 192 66.7
Oeu036625.1 Olea europaea HOM05D004248 ORTHO05D004978 8.9e-64 249.6 609 30.4
PSO478G2592 Papaver somniferum HOM05D004248 ORTHO05D004978 1.7e-62 245.4 524 30.2
SHI44568 Sapria himalayana HOM05D004248 ORTHO05D004978 7.8e-60 236.5 199 57.8
Glyma.16G096800 Glycine max HOM05D004248 ORTHO05D004978 2.8e-57 228.0 193 60.6
BolC5t32083H Brassica oleracea HOM05D004248 ORTHO05D004978 4.0e-56 224.2 457 38.1
ATR0684G087 Amborella trichopoda HOM05D004248 ORTHO05D004978 1.5e-47 195.7 341 35.2
Ca_30860_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 4.4e-47 194.1 337 36.2
ATR0684G083 Amborella trichopoda HOM05D004248 ORTHO05D004978 2.2e-46 191.8 266 41.4
SMO114G0040 Selaginella moellendorffii HOM05D004248 ORTHO05D004978 4.9e-46 190.7 751 25.8
AT4G04680 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 6.2e-41 173.7 164 56.7
AagrBONN_evm.TU.Sc2ySwM_344.4227 Anthoceros agrestis HOM05D004248 ORTHO05D004978 2.4e-40 171.8 317 34.4
MBI13_g30331_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D004978 3.1e-40 171.4 143 64.3
Lj1A1051T46 Lonicera japonica HOM05D004248 ORTHO05D004978 6.9e-40 170.2 223 43.5
Nitab4.5_0002858g0090 Nicotiana tabacum HOM05D004248 ORTHO05D004978 5.8e-39 167.2 221 42.5
Nitab4.5_0000020g0040 Nicotiana tabacum HOM05D004248 ORTHO05D004978 2.5e-34 151.8 225 40.4
Lj1A1051T47 Lonicera japonica HOM05D004248 ORTHO05D004978 3.3e-34 151.4 188 44.1
HanXRQChr01g0006711 Helianthus annuus HOM05D004248 ORTHO05D004978 1.1e-32 146.4 143 53.1
C05p33550 Brassica napus HOM05D004248 ORTHO05D004978 6.9e-32 143.7 182 46.7
Nitab4.5_0000020g0030 Nicotiana tabacum HOM05D004248 ORTHO05D004978 1.5e-31 142.5 219 37.9
BraA05t20915Z Brassica rapa HOM05D000848 ORTHO05D000007 9.9e-31 139.8 123 60.2
Cpa.g.c47797 Carica papaya HOM05D004248 ORTHO05D004978 1.4e-29 136.0 84 83.3
HanXRQChr06g0164411 Helianthus annuus HOM05D004248 ORTHO05D004978 3.0e-27 128.3 214 36.4
Cre10.g442250 Chlamydomonas reinhardtii HOM05D004248 ORTHO05D004978 1.9e-26 125.6 222 35.1
RcHm_v2.0_Chr1g0331091 Rosa chinensis HOM05D004248 ORTHO05D004978 7.4e-26 123.6 108 56.5
HanXRQChr06g0164401 Helianthus annuus HOM05D004248 ORTHO05D004978 1.8e-24 119.0 180 35.0
Psat5g276400 Pisum sativum HOM05D004248 ORTHO05D004978 5.8e-23 114.0 83 71.1
MCO15G695 Micromonas commoda HOM05D004248 ORTHO05D004978 6.7e-19 100.5 157 36.9
SEGI_14989 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 2.5e-18 98.6 182 30.2
SEGI_27247 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 2.8e-17 95.1 100 50.0
Psat3g179840 Pisum sativum HOM05D004248 ORTHO05D004978 4.8e-17 94.4 98 42.9
Psat3g179800 Pisum sativum HOM05D004248 ORTHO05D004978 1.4e-16 92.8 91 42.9
PRCOL_00003825 Prasinoderma coloniale HOM05D004248 ORTHO05D004978 3.1e-16 91.7 188 31.9
Potri.011G096201 Populus trichocarpa HOM05D004248 ORTHO05D004978 2.5e-10 72.0 74 48.6
Phvul.004G028700 Phaseolus vulgaris HOM05D004248 ORTHO05D004978 2.6e-07 62.0 68 48.5


User provided reference genes

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