Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g32356 Brassica carinata HOM05D008756 ORTHO05D003415 8.9e-48 193.4 103 100.0
BcaC06g32337 Brassica carinata HOM05D008756 ORTHO05D003415 3.3e-42 174.9 106 90.6
BolC9t59818H Brassica oleracea HOM05D008756 ORTHO05D003415 2.8e-41 171.8 106 89.6
A10p30210 Brassica napus HOM05D008756 ORTHO05D003415 6.6e-35 150.6 106 81.1
Sp6g36600 Schrenkiella parvula HOM05D008756 ORTHO05D003415 4.7e-33 144.4 106 77.4
C09p70620 Brassica napus HOM05D008756 ORTHO05D003415 1.1e-32 143.3 106 78.3
BraA10t45059Z Brassica rapa HOM05D008756 ORTHO05D003415 1.1e-32 143.3 106 78.3
AL6G16290 Arabidopsis lyrata HOM05D008756 ORTHO05D003415 6.8e-32 140.6 106 73.6
CARHR206980 Cardamine hirsuta HOM05D008756 ORTHO05D003415 1.5e-31 139.4 106 75.5
Carub.0006s0515 Capsella rubella HOM05D008756 ORTHO05D003415 7.5e-31 137.1 106 76.4
AT5G06265 Arabidopsis thaliana HOM05D008756 ORTHO05D003415 1.1e-29 133.3 107 72.9
BolC9t59816H Brassica oleracea HOM05D008756 ORTHO05D003415 1.4e-29 132.9 82 87.8
BolC9t59813H Brassica oleracea HOM05D008756 ORTHO05D003415 1.9e-29 132.5 82 87.8
BolC9t59806H Brassica oleracea HOM05D008756 ORTHO05D003415 1.2e-28 129.8 80 88.8
BolC9t59804H Brassica oleracea HOM05D008756 ORTHO05D003415 1.5e-26 122.9 82 81.7
Aa31sc52G60 Aethionema arabicum HOM05D008756 ORTHO05D003415 4.7e-25 117.9 106 66.0
A10p09210 Brassica napus HOM05D008756 ORTHO05D003415 2.9e-22 108.6 64 87.5
A10p09290 Brassica napus HOM05D008756 ORTHO05D003415 1.9e-21 105.9 64 87.5
THA.LOC104826814 Tarenaya hassleriana HOM05D003660 ORTHO05D003415 7.8e-20 100.5 104 56.7
A10p09330 Brassica napus HOM05D008756 ORTHO05D003415 1.3e-19 99.8 64 81.2
BraA10t43000Z Brassica rapa HOM05D008756 ORTHO05D003415 1.1e-18 96.7 64 84.4
BraA10t43004Z Brassica rapa HOM05D008756 ORTHO05D003415 1.1e-18 96.7 64 84.4
A10p09270 Brassica napus HOM05D008756 ORTHO05D003415 1.5e-18 96.3 64 82.8
A10p09190 Brassica napus HOM05D008756 ORTHO05D003415 1.9e-18 95.9 64 82.8
BraA10t43008Z Brassica rapa HOM05D008756 ORTHO05D003415 9.6e-18 93.6 64 81.2
A10p30190 Brassica napus HOM05D008756 ORTHO05D003415 1.3e-17 93.2 64 79.7
C09p70600 Brassica napus HOM05D008756 ORTHO05D003415 1.3e-17 93.2 64 79.7
BraA10t45057Z Brassica rapa HOM05D008756 ORTHO05D003415 1.3e-17 93.2 64 79.7
Potri.006G206100 Populus trichocarpa HOM05D003660 ORTHO05D003415 2.1e-17 92.4 88 55.7
BraA10t45055Z Brassica rapa HOM05D008756 ORTHO05D003415 1.4e-16 89.7 72 73.6
A10p30170 Brassica napus HOM05D008756 ORTHO05D000925 6.9e-16 87.4 68 73.5
BolC9t59814H Brassica oleracea HOM05D008756 ORTHO05D003415 1.5e-15 86.3 57 80.7
C09p70580 Brassica napus HOM05D008756 ORTHO05D000925 2.0e-15 85.9 60 80.0
CiPaw.10G014700 Carya illinoinensis HOM05D003660 ORTHO05D003415 4.4e-15 84.7 108 47.2
Potri.016G073500 Populus trichocarpa HOM05D003660 ORTHO05D003415 1.3e-14 83.2 88 53.4
BcaNung05843 Brassica carinata HOM05D008756 ORTHO05D003415 1.7e-14 82.8 58 81.0
BcaNung05844 Brassica carinata HOM05D008756 ORTHO05D003415 1.7e-14 82.8 58 81.0
Sed0020241 Sechium edule HOM05D003660 ORTHO05D003415 1.7e-14 82.8 108 45.4
CANSAT64G0684 Cannabis sativa HOM05D003660 ORTHO05D003415 2.9e-14 82.0 108 45.4
Duzib093G1675 Durio zibethinus HOM05D003660 ORTHO05D003415 2.9e-14 82.0 108 43.5
ClCG10G018570 Citrullus lanatus HOM05D003660 ORTHO05D003415 6.4e-14 80.9 108 43.5
TAR623G0029 Trochodendron aralioides HOM05D003660 ORTHO05D003415 1.1e-13 80.1 87 50.6
Gohir.A09G137200 Gossypium hirsutum HOM05D003660 ORTHO05D003415 1.9e-13 79.3 108 42.6
Eucgr.K02602 Eucalyptus grandis HOM05D003660 ORTHO05D003415 2.4e-13 79.0 104 46.2
Manes.08G030600 Manihot esculenta HOM05D003660 ORTHO05D003415 2.4e-13 79.0 88 51.1
PGR004G0692 Punica granatum HOM05D003660 ORTHO05D003415 2.4e-13 79.0 104 46.2
TAR633G2283 Trochodendron aralioides HOM05D003660 ORTHO05D003415 2.4e-13 79.0 87 50.6
Gorai.006G151200 Gossypium raimondii HOM05D003660 ORTHO05D003415 5.4e-13 77.8 108 42.6
Thecc.05G099700 Theobroma cacao HOM05D003660 ORTHO05D003415 5.4e-13 77.8 108 43.5
Actinidia35475 Actinidia chinensis HOM05D003660 ORTHO05D003415 7.1e-13 77.4 87 50.6
Aqoxy4G02700 Aquilegia oxysepala HOM05D003660 ORTHO05D003415 7.1e-13 77.4 87 51.7
PSO339G2942 Papaver somniferum HOM05D003660 ORTHO05D003415 9.3e-13 77.0 87 49.4
PSO801G0667 Papaver somniferum HOM05D003660 ORTHO05D003415 9.3e-13 77.0 87 49.4
MD14G1033900 Malus domestica HOM05D003660 ORTHO05D003415 1.2e-12 76.6 108 44.4
Nitab4.5_0001135g0080 Nicotiana tabacum HOM05D003660 ORTHO05D003415 1.6e-12 76.3 97 45.4
Peaxi162Scf00224g00520 Petunia axillaris HOM05D003660 ORTHO05D003415 2.1e-12 75.9 87 48.3
Solyc11g068760.2 Solanum lycopersicum HOM05D003660 ORTHO05D003415 2.1e-12 75.9 87 48.3
Sopen11g027470 Solanum pennellii HOM05D003660 ORTHO05D003415 2.1e-12 75.9 87 48.3
CSS0013947 Camellia sinensis var. sinensis HOM05D003660 ORTHO05D003415 3.5e-12 75.1 86 48.8
TAR636G3190 Trochodendron aralioides HOM05D003660 ORTHO05D003415 7.8e-12 73.9 87 49.4
HPP92_009784 Vanilla planifolia HOM05D003660 ORTHO05D003415 7.8e-12 73.9 86 51.2
Ciclev10029624m.g Citrus clementina HOM05D003660 ORTHO05D003415 1.3e-11 73.2 87 43.7
Nn6g34777 Nelumbo nucifera HOM05D003660 ORTHO05D003415 1.3e-11 73.2 86 47.7
Rhsim01G0202600 Rhododendron simsii HOM05D003660 ORTHO05D003415 1.3e-11 73.2 87 48.3
Prupe.7G099100 Prunus persica HOM05D003660 ORTHO05D003415 1.7e-11 72.8 108 42.6
CsaV3_6G038470 Cucumis sativus L. HOM05D003660 ORTHO05D003415 2.3e-11 72.4 86 45.3
Gohir.A11G318200 Gossypium hirsutum HOM05D003660 ORTHO05D003415 2.3e-11 72.4 108 38.0
Gohir.D11G337400 Gossypium hirsutum HOM05D003660 ORTHO05D003415 2.3e-11 72.4 108 38.0
Gorai.007G367400 Gossypium raimondii HOM05D003660 ORTHO05D003415 2.3e-11 72.4 108 38.0
Sabra06G0159000 Salix brachista HOM05D003660 ORTHO05D003415 3.0e-11 72.0 125 40.8
ClCG02G022340 Citrullus lanatus HOM05D003660 ORTHO05D003415 3.9e-11 71.6 86 44.2
MELO3C014510.2 Cucumis melo HOM05D000010 ORTHO05D005236 3.9e-11 71.6 86 44.2
Phvul.005G121700 Phaseolus vulgaris HOM05D003660 ORTHO05D003415 3.9e-11 71.6 86 44.2
CiPaw.14G096800 Carya illinoinensis HOM05D003660 ORTHO05D003415 5.1e-11 71.2 87 44.8
RcHm_v2.0_Chr3g0475141 Rosa chinensis HOM05D003660 ORTHO05D003415 5.1e-11 71.2 88 46.6
BNapus_Darmor_BZH_scaffold_38p00770 Brassica napus HOM05D003660 ORTHO05D003415 6.6e-11 70.9 97 43.3
Cc01_g08660 Coffea canephora HOM05D003660 ORTHO05D003415 6.6e-11 70.9 87 44.8
Medtr2g086880 Medicago truncatula HOM05D000010 ORTHO05D005236 6.6e-11 70.9 86 44.2
Sc12g0004740 Simmondsia chinensis HOM05D003660 ORTHO05D003415 6.6e-11 70.9 86 45.3
VMungo1080G1056 Vigna mungo HOM05D003660 ORTHO05D003415 6.6e-11 70.9 86 44.2
MELO3C009511.2 Cucumis melo HOM05D003660 ORTHO05D003415 8.7e-11 70.5 108 41.7
Lalb_Chr19g0136331 Lupinus albus HOM05D003660 ORTHO05D003415 8.7e-11 70.5 86 45.3
MBI17_g39787_MAGBIO Magnolia biondii HOM05D003660 ORTHO05D003415 8.7e-11 70.5 89 47.2
vmacro14331 Vaccinium macrocarpon HOM05D003660 ORTHO05D003415 8.7e-11 70.5 87 46.0
Glyma.13G314500 Glycine max HOM05D003660 ORTHO05D003415 1.1e-10 70.1 86 44.2
Hund18786 Selenicereus undatus HOM05D003660 ORTHO05D003415 1.1e-10 70.1 86 43.0
Thecc.09G277300 Theobroma cacao HOM05D003660 ORTHO05D003415 1.1e-10 70.1 87 43.7
Lalb_Chr14g0376021 Lupinus albus HOM05D003660 ORTHO05D003415 1.5e-10 69.7 97 39.2
Sp6g22960 Schrenkiella parvula HOM05D003660 ORTHO05D003415 1.5e-10 69.7 93 46.2
Migut.D02405 Erythranthe guttata HOM05D003660 ORTHO05D003415 1.9e-10 69.3 108 42.6
Glyma.12G186952 Glycine max HOM05D003660 ORTHO05D003415 1.9e-10 69.3 86 44.2
Os02g0536100 Oryza sativa ssp. japonica HOM05D003660 ORTHO05D003415 1.9e-10 69.3 87 46.0
Hund20939 Selenicereus undatus HOM05D003660 ORTHO05D003415 1.9e-10 69.3 86 43.0
MSTRG.17695 Avicennia marina HOM05D003660 ORTHO05D003415 2.5e-10 68.9 87 44.8
Migut.D02421 Erythranthe guttata HOM05D003660 ORTHO05D003415 2.5e-10 68.9 87 48.3
MBI01_g04518_MAGBIO Magnolia biondii HOM05D003660 ORTHO05D003415 2.5e-10 68.9 86 46.5
THA.LOC104810930 Tarenaya hassleriana HOM05D003660 ORTHO05D003415 3.3e-10 68.6 93 43.0
Atru.chr3.3157 Acer truncatum HOM05D003660 ORTHO05D003415 4.3e-10 68.2 87 42.5
BcaC03g13871 Brassica carinata HOM05D003660 ORTHO05D003415 4.3e-10 68.2 97 42.3
Psat7g186360 Pisum sativum HOM05D003660 ORTHO05D003415 4.3e-10 68.2 86 47.7
AL6G33280 Arabidopsis lyrata HOM05D003660 ORTHO05D003415 5.6e-10 67.8 97 43.3
C02p10760 Brassica napus HOM05D003660 ORTHO05D003415 5.6e-10 67.8 97 41.2
Sabra16G0076300 Salix brachista HOM05D003660 ORTHO05D003415 5.6e-10 67.8 90 47.8
Aa31LG4G13780 Aethionema arabicum HOM05D003660 ORTHO05D003415 7.3e-10 67.4 97 40.2
BolC2t07146H Brassica oleracea HOM05D003660 ORTHO05D003415 7.3e-10 67.4 97 41.2
Gohir.A09G097300 Gossypium hirsutum HOM05D003660 ORTHO05D003415 7.3e-10 67.4 87 41.4
Prupe.6G138900 Prunus persica HOM05D003660 ORTHO05D003415 7.3e-10 67.4 87 43.7
BcaB05g22739 Brassica carinata HOM05D003660 ORTHO05D003415 9.6e-10 67.0 97 41.2
Aa31LG1G13260 Aethionema arabicum HOM05D003660 ORTHO05D003415 1.3e-09 66.6 93 43.0
AT5G22280 Arabidopsis thaliana HOM05D003660 ORTHO05D003415 1.3e-09 66.6 93 44.1
Gorai.006G113800 Gossypium raimondii HOM05D003660 ORTHO05D003415 1.3e-09 66.6 87 40.2
MD11G1171800 Malus domestica HOM05D003660 ORTHO05D003415 1.3e-09 66.6 98 41.8
MD12G1033100 Malus domestica HOM05D003660 ORTHO05D003415 1.3e-09 66.6 108 40.7
SalBow3G1900 Salvia bowleyana HOM05D003660 ORTHO05D003415 1.3e-09 66.6 86 40.7
Carub.0006s2002 Capsella rubella HOM05D003660 ORTHO05D003415 1.6e-09 66.2 97 43.3
MD03G1151200 Malus domestica HOM05D003660 ORTHO05D003415 1.6e-09 66.2 105 39.0
Manes.04G000300 Manihot esculenta HOM05D003660 ORTHO05D003415 2.1e-09 65.9 87 41.4
THA.LOC104799557 Tarenaya hassleriana HOM05D003660 ORTHO05D003415 2.1e-09 65.9 93 44.1
MSTRG.12378 Avicennia marina HOM05D003660 ORTHO05D003415 3.6e-09 65.1 87 43.7
CsaV3_3G037680 Cucumis sativus L. HOM05D003660 ORTHO05D003415 3.6e-09 65.1 108 38.0
CARHR104590 Cardamine hirsuta HOM05D003660 ORTHO05D003415 4.8e-09 64.7 93 39.8
COL.COLO4_04567 Corchorus olitorius HOM05D003660 ORTHO05D003415 4.8e-09 64.7 87 39.1
Thhalv10010953m.g Eutrema salsugineum HOM05D003660 ORTHO05D003415 4.8e-09 64.7 93 40.9
Gohir.D09G097100 Gossypium hirsutum HOM05D003660 ORTHO05D003415 4.8e-09 64.7 87 39.1
Hma1.2p1_1178F.1_g264370 Hydrangea macrophylla HOM05D003660 ORTHO05D003415 4.8e-09 64.7 92 41.3
Hma1.2p1_2789F.1_g328565 Hydrangea macrophylla HOM05D003660 ORTHO05D003415 4.8e-09 64.7 92 41.3
Aqoxy2G01022 Aquilegia oxysepala HOM05D003660 ORTHO05D003415 6.2e-09 64.3 86 44.2
Zm00001eb242920 Zea mays HOM05D003660 ORTHO05D003415 6.2e-09 64.3 82 42.7
CANSAT54G1844 Cannabis sativa HOM05D003660 ORTHO05D003415 8.1e-09 63.9 87 40.2
Duzib170G1097 Durio zibethinus HOM05D000010 ORTHO05D005236 1.1e-08 63.5 87 40.2
Lj3g0024971 Lotus japonicus HOM05D003660 ORTHO05D003415 1.4e-08 63.2 86 40.7
SEGI_04697 Sequoiadendron giganteum HOM05D003660 ORTHO05D003415 1.8e-08 62.8 86 45.3
Actinidia06171 Actinidia chinensis HOM05D003660 ORTHO05D003415 2.4e-08 62.4 85 44.7
Thhalv10015076m.g Eutrema salsugineum HOM05D003660 ORTHO05D003415 2.4e-08 62.4 93 39.8
RcHm_v2.0_Chr5g0047201 Rosa chinensis HOM05D003660 ORTHO05D003415 2.4e-08 62.4 105 37.1
FvH4_3g25870 Fragaria vesca HOM05D003660 ORTHO05D003415 3.1e-08 62.0 87 40.2
FAN21G0895 Fragaria x ananassa HOM05D003660 ORTHO05D003415 3.1e-08 62.0 87 40.2
FAN25G0104 Fragaria x ananassa HOM05D003660 ORTHO05D003415 3.1e-08 62.0 87 40.2
TWI74G0792 Tripterygium wilfordii HOM05D003660 ORTHO05D003415 3.1e-08 62.0 93 38.7
unitig_22.g6156 Utricularia gibba HOM05D003660 ORTHO05D003415 3.1e-08 62.0 82 41.5
BcaC01g06594 Brassica carinata HOM05D003660 ORTHO05D003415 4.0e-08 61.6 98 40.8
C03p12270 Brassica napus HOM05D003660 ORTHO05D003415 4.0e-08 61.6 98 40.8
BcaB01g04718 Brassica carinata HOM05D003660 ORTHO05D003415 5.3e-08 61.2 98 40.8
Cpa.g.sc195.36 Carica papaya HOM05D003660 ORTHO05D003415 5.3e-08 61.2 90 40.0
Zm00001eb304510 Zea mays HOM05D003660 ORTHO05D003415 5.3e-08 61.2 85 41.2
Lsat_1_v5_gn_1_57561 Lactuca sativa HOM05D003660 ORTHO05D003415 6.9e-08 60.8 88 42.0
Os07g0250300 Oryza sativa ssp. japonica HOM05D003660 ORTHO05D003415 6.9e-08 60.8 102 38.2
Potri.004G200200 Populus trichocarpa HOM05D003660 ORTHO05D003415 6.9e-08 60.8 87 39.1
AT3G44280 Arabidopsis thaliana HOM05D003660 ORTHO05D003415 9.0e-08 60.5 93 38.7
CDE04G3260 Ceratophyllum demersum HOM05D003660 ORTHO05D003415 9.0e-08 60.5 87 40.2
Oeu035577.1 Olea europaea HOM05D003660 ORTHO05D003415 9.0e-08 60.5 105 38.1
AL5G22410 Arabidopsis lyrata HOM05D003660 ORTHO05D003415 1.2e-07 60.1 93 38.7
A03p10660 Brassica napus HOM05D003660 ORTHO05D003415 1.2e-07 60.1 98 42.9
BraA03t10378Z Brassica rapa HOM05D003660 ORTHO05D003415 1.2e-07 60.1 98 42.9
SEGI_28618 Sequoiadendron giganteum HOM05D003660 ORTHO05D003415 1.2e-07 60.1 99 40.4
Ca_01643_v3 Cicer arietinum L. HOM05D000010 ORTHO05D005236 1.5e-07 59.7 79 41.8
BcaB08g36812 Brassica carinata HOM05D003660 ORTHO05D003415 2.0e-07 59.3 97 38.1
A10p09230 Brassica napus HOM05D008756 ORTHO05D003415 2.0e-07 59.3 34 85.3
ECA248G2122 Erigeron canadensis HOM05D003660 ORTHO05D003415 2.6e-07 58.9 87 42.5
Lj3g0015124 Lotus japonicus HOM05D003660 ORTHO05D003415 2.6e-07 58.9 93 39.8
ATR0772G050 Amborella trichopoda HOM05D003660 ORTHO05D003415 3.4e-07 58.5 78 46.2
A10p09170 Brassica napus HOM05D008756 ORTHO05D003415 3.4e-07 58.5 34 82.4
Gohir.A05G078900 Gossypium hirsutum HOM05D003660 ORTHO05D003415 3.4e-07 58.5 87 39.1
HanXRQChr01g0024911 Helianthus annuus HOM05D003660 ORTHO05D003415 3.4e-07 58.5 86 43.0
HanXRQChr02g0053831 Helianthus annuus HOM05D003660 ORTHO05D003415 3.4e-07 58.5 74 41.9
arahy.Tifrunner.gnm1.ann1.PLL1TV Arachis hypogaea HOM05D003660 ORTHO05D003415 4.5e-07 58.2 66 47.0
A10p09310 Brassica napus HOM05D008756 ORTHO05D003415 7.6e-07 57.4 34 82.4
Carub.0005s1000 Capsella rubella HOM05D003660 ORTHO05D003415 7.6e-07 57.4 93 37.6
SGA_v2.0_scaffold7G03991 Striga asiatica HOM05D003660 ORTHO05D003415 7.6e-07 57.4 87 39.1
TWI77G0680 Tripterygium wilfordii HOM05D003660 ORTHO05D003415 7.6e-07 57.4 103 40.8
A06p22070 Brassica napus HOM05D003660 ORTHO05D003415 1.3e-06 56.6 93 36.6
Eucgr.J00533 Eucalyptus grandis HOM05D003660 ORTHO05D003415 1.3e-06 56.6 84 39.3
Gorai.009G083400 Gossypium raimondii HOM05D003660 ORTHO05D003415 1.3e-06 56.6 87 37.9
FAN02G2975 Fragaria x ananassa HOM05D003660 ORTHO05D003415 2.9e-06 55.5 69 46.4
FAN11G1383 Fragaria x ananassa HOM05D003660 ORTHO05D003415 2.9e-06 55.5 78 39.7
FAN14G4527 Fragaria x ananassa HOM05D003660 ORTHO05D003415 8.4e-06 53.9 69 47.8
Os03g0836500 Oryza sativa ssp. japonica HOM05D003660 ORTHO05D003415 8.4e-06 53.9 90 37.8


User provided reference genes

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