Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g32348 Brassica carinata HOM05D010494 ORTHO05D006261 5.4e-99 364.4 192 100.0
BcaC06g32361 Brassica carinata HOM05D010494 ORTHO05D006261 2.2e-68 262.7 146 97.9
BolC9t59798H Brassica oleracea HOM05D010494 ORTHO05D006261 1.9e-67 259.6 146 93.2
Sp6g36570 Schrenkiella parvula HOM05D010494 ORTHO05D006261 7.2e-51 204.5 149 73.8
Thhalv10014914m.g Eutrema salsugineum HOM05D010494 ORTHO05D006261 2.6e-48 196.1 148 72.3
BcaB01g05730 Brassica carinata HOM05D010494 ORTHO05D006261 3.7e-47 192.2 143 72.7
BraA03t09629Z Brassica rapa HOM05D010494 ORTHO05D006261 7.7e-45 184.5 148 70.3
A03p02670 Brassica napus HOM05D010494 ORTHO05D006261 3.8e-44 182.2 148 69.6
C03p03070 Brassica napus HOM05D010494 ORTHO05D006261 6.5e-44 181.4 148 69.6
BolC3t12855H Brassica oleracea HOM05D010494 ORTHO05D006261 2.1e-42 176.4 151 68.2
A10p30120 Brassica napus HOM05D010494 ORTHO05D006261 1.8e-41 173.3 146 69.9
C09p70530 Brassica napus HOM05D010494 ORTHO05D006261 1.8e-41 173.3 146 69.9
BraA10t45050Z Brassica rapa HOM05D010494 ORTHO05D006261 1.5e-40 170.2 146 69.2
AL6G16320 Arabidopsis lyrata HOM05D010494 ORTHO05D006261 4.4e-40 168.7 148 68.2
AT5G06280 Arabidopsis thaliana HOM05D010494 ORTHO05D006261 7.4e-40 167.9 149 63.8
Aa31sc52G100 Aethionema arabicum HOM05D010494 ORTHO05D006261 4.1e-38 162.2 138 61.6
CARHR207010 Cardamine hirsuta HOM05D010494 ORTHO05D006261 1.3e-36 157.1 148 60.8
Carub.0006s0518 Capsella rubella HOM05D010494 ORTHO05D006261 2.0e-32 143.3 145 60.7
BcaNung06835 Brassica carinata HOM05D010494 ORTHO05D006261 2.3e-25 119.8 90 78.9
BcaC06g32590 Brassica carinata HOM05D010494 ORTHO05D006261 2.4e-22 109.8 83 79.5
THA.LOC104816611 Tarenaya hassleriana HOM05D006872 ORTHO05D006261 7.0e-22 108.2 144 49.3
BcaB08g36638 Brassica carinata HOM05D010494 ORTHO05D006261 6.1e-18 95.1 84 67.9
Gohir.A01G202400 Gossypium hirsutum HOM05D006872 ORTHO05D006261 1.7e-12 77.0 136 40.4
Thecc.05G100900 Theobroma cacao HOM05D006872 ORTHO05D006261 3.8e-12 75.9 119 42.9
COL.COLO4_29613 Corchorus olitorius HOM05D006872 ORTHO05D006261 8.6e-12 74.7 132 43.2
Gohir.D01G192400 Gossypium hirsutum HOM05D006872 ORTHO05D006261 1.9e-11 73.6 136 39.0
Duzib128G0031 Durio zibethinus HOM05D006872 ORTHO05D006261 2.5e-11 73.2 124 41.9
Gorai.002G236200 Gossypium raimondii HOM05D006872 ORTHO05D006261 1.6e-10 70.5 136 38.2
TAR268G0003 Trochodendron aralioides HOM05D006872 ORTHO05D006261 4.7e-10 68.9 132 37.1
Atru.chr8.1395 Acer truncatum HOM05D006872 ORTHO05D006261 6.1e-10 68.6 129 38.0
Lsat_1_v5_gn_2_55301 Lactuca sativa HOM05D006872 ORTHO05D006261 6.1e-10 68.6 132 40.2
Duzib106G0826 Durio zibethinus HOM05D006872 ORTHO05D006261 8.0e-10 68.2 132 37.9
MBI17_g00990_MAGBIO Magnolia biondii HOM05D006872 ORTHO05D006261 8.0e-10 68.2 137 43.8
HanXRQChr15g0494731 Helianthus annuus HOM05D006872 ORTHO05D006261 1.0e-09 67.8 127 42.5
Nn6g34756 Nelumbo nucifera HOM05D006872 ORTHO05D006261 1.4e-09 67.4 126 41.3
Rhsim04G0129900 Rhododendron simsii HOM05D006872 ORTHO05D006261 1.8e-09 67.0 100 43.0
Cpa.g.sc104.60 Carica papaya HOM05D006872 ORTHO05D006261 5.2e-09 65.5 140 32.9
MELO3C009518.2 Cucumis melo HOM05D006872 ORTHO05D006261 5.2e-09 65.5 140 38.6
ECA233G2821 Erigeron canadensis HOM05D001423 ORTHO05D001412 5.2e-09 65.5 104 44.2
Ciclev10013044m.g Citrus clementina HOM05D006872 ORTHO05D006261 6.8e-09 65.1 128 39.1
ECA238G4730 Erigeron canadensis HOM05D006872 ORTHO05D006261 8.9e-09 64.7 137 40.1
Nn2g14262 Nelumbo nucifera HOM05D006872 ORTHO05D006261 8.9e-09 64.7 156 32.7
Sabra06G0158200 Salix brachista HOM05D006872 ORTHO05D006261 1.5e-08 63.9 127 38.6
TWI53G1355 Tripterygium wilfordii HOM05D006872 ORTHO05D006261 1.5e-08 63.9 142 34.5
TAR633G1261 Trochodendron aralioides HOM05D006872 ORTHO05D006261 2.0e-08 63.5 131 35.9
Aqoxy4G02683 Aquilegia oxysepala HOM05D006872 ORTHO05D006261 2.6e-08 63.2 130 37.7
CiPaw.09G018900 Carya illinoinensis HOM05D006872 ORTHO05D006261 3.4e-08 62.8 133 37.6
Actinidia07935 Actinidia chinensis HOM05D006872 ORTHO05D006261 4.4e-08 62.4 91 46.2
Ca_09043_v3 Cicer arietinum L. HOM05D006872 ORTHO05D006261 4.4e-08 62.4 146 35.6
ClCG10G018510 Citrullus lanatus HOM05D006872 ORTHO05D006261 4.4e-08 62.4 137 38.0
Potri.016G072500 Populus trichocarpa HOM05D006872 ORTHO05D006261 4.4e-08 62.4 127 39.4
Sabra16G0075400 Salix brachista HOM05D006872 ORTHO05D006261 5.8e-08 62.0 127 38.6
Sopen01g003310 Solanum pennellii HOM05D006872 ORTHO05D006261 7.5e-08 61.6 151 35.1
PGSC0003DMG400016417 Solanum tuberosum HOM05D006872 ORTHO05D006261 7.5e-08 61.6 152 35.5
CsaV3_3G037750 Cucumis sativus L. HOM05D006872 ORTHO05D006261 1.3e-07 60.8 136 37.5
TWI77G0288 Tripterygium wilfordii HOM05D006872 ORTHO05D006261 1.3e-07 60.8 141 34.8
unitig_578.g16361 Utricularia gibba HOM05D006872 ORTHO05D006261 1.3e-07 60.8 133 39.1
CANSAT64G1977 Cannabis sativa HOM05D006872 ORTHO05D006261 1.7e-07 60.5 104 41.3
AUR62037038 Chenopodium quinoa HOM05D006872 ORTHO05D006261 1.7e-07 60.5 170 34.1
QL07p037475 Quercus lobata HOM05D006872 ORTHO05D006261 1.7e-07 60.5 115 37.4
Solyc01g007770.2 Solanum lycopersicum HOM05D006872 ORTHO05D006261 1.7e-07 60.5 151 35.1
Hma1.2p1_1442F.1_g283790 Hydrangea macrophylla HOM05D006872 ORTHO05D006261 4.9e-07 58.9 157 33.8
FAN05G2500 Fragaria x ananassa HOM05D006872 ORTHO05D006261 6.4e-07 58.5 94 41.5
FAN05G3358 Fragaria x ananassa HOM05D006872 ORTHO05D006261 6.4e-07 58.5 94 41.5
PSO339G3041 Papaver somniferum HOM05D006872 ORTHO05D006261 6.4e-07 58.5 131 40.5
PSO384G3916 Papaver somniferum HOM05D006872 ORTHO05D006261 6.4e-07 58.5 129 38.8
Sed0000741 Sechium edule HOM05D006872 ORTHO05D006261 6.4e-07 58.5 127 37.8
Oeu009304.1 Olea europaea HOM05D006872 ORTHO05D006261 8.3e-07 58.2 116 39.7
Psat3g030200 Pisum sativum HOM05D006872 ORTHO05D006261 8.3e-07 58.2 131 37.4
Manes.08G031500 Manihot esculenta HOM05D006872 ORTHO05D006261 1.1e-06 57.8 137 35.8
Nitab4.5_0011425g0030 Nicotiana tabacum HOM05D006872 ORTHO05D006261 1.1e-06 57.8 98 42.9
Ah.08g210170 Amaranthus hybridus HOM05D006872 ORTHO05D006261 1.4e-06 57.4 128 35.9
AUR62006268 Chenopodium quinoa HOM05D006872 ORTHO05D006261 1.4e-06 57.4 117 40.2
Potri.006G205200 Populus trichocarpa HOM05D006872 ORTHO05D006261 1.4e-06 57.4 128 39.8
FvH4_6g19940 Fragaria vesca HOM05D006872 ORTHO05D006261 1.9e-06 57.0 93 40.9
FAN14G4576 Fragaria x ananassa HOM05D006872 ORTHO05D006261 1.9e-06 57.0 93 40.9
Lsat_1_v5_gn_6_35120 Lactuca sativa HOM05D006872 ORTHO05D006261 1.9e-06 57.0 91 44.0
MSTRG.26609 Avicennia marina HOM05D006872 ORTHO05D006261 2.4e-06 56.6 115 40.0
Medtr7g105820 Medicago truncatula HOM05D006872 ORTHO05D006261 2.4e-06 56.6 94 43.6
MELO3C024577.2 Cucumis melo HOM05D006872 ORTHO05D006261 5.4e-06 55.5 123 40.7
Glyma.19G198100 Glycine max HOM05D006872 ORTHO05D006261 5.4e-06 55.5 139 35.3
Lalb_Chr20g0111461 Lupinus albus HOM05D006872 ORTHO05D006261 7.0e-06 55.1 120 35.0
Sed0018559 Sechium edule HOM05D006872 ORTHO05D006261 9.2e-06 54.7 101 43.6


User provided reference genes

Program Settings