Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g32241 Brassica carinata HOM05D007902 ORTHO05D009839 4.2e-104 381.3 190 100.0
BolC9t59901H Brassica oleracea HOM05D007902 ORTHO05D009839 4.9e-100 367.9 190 97.9
C09p71380 Brassica napus HOM05D007902 ORTHO05D009839 2.9e-97 358.6 181 97.8
BraA10t45132Z Brassica rapa HOM05D007902 ORTHO05D009839 1.8e-91 339.3 190 92.6
Sp6g37500 Schrenkiella parvula HOM05D007902 ORTHO05D009839 1.1e-75 287.0 192 80.7
AL6G15200 Arabidopsis lyrata HOM05D007902 ORTHO05D009839 4.3e-72 275.0 193 75.6
BcaB05g21722 Brassica carinata HOM05D007902 ORTHO05D009839 3.1e-70 268.9 185 77.3
AT5G05330 Arabidopsis thaliana HOM05D007902 ORTHO05D009839 8.9e-70 267.3 193 72.5
BcaC03g13156 Brassica carinata HOM05D007902 ORTHO05D009839 1.5e-69 266.5 187 76.5
C02p02280 Brassica napus HOM05D007902 ORTHO05D009839 1.3e-68 263.5 187 75.4
CARHR207920 Cardamine hirsuta HOM05D007902 ORTHO05D009839 4.1e-67 258.5 193 72.5
BraA02t04842Z Brassica rapa HOM05D007902 ORTHO05D009839 6.0e-66 254.6 178 77.0
Carub.0006s0425 Capsella rubella HOM05D007902 ORTHO05D009839 1.7e-65 253.1 192 69.3
BolC2t06195H Brassica oleracea HOM05D007902 ORTHO05D009839 9.0e-54 214.2 178 69.7
Thhalv10014946m.g Eutrema salsugineum HOM05D007902 ORTHO05D009839 2.0e-53 213.0 146 75.3
Cpa.g.sc19.89 Carica papaya HOM05D007902 ORTHO05D009839 1.6e-34 150.2 176 47.2
Manes.07G138200 Manihot esculenta HOM05D007902 ORTHO05D009839 4.6e-34 148.7 172 48.8
TAR623G0347 Trochodendron aralioides HOM05D007902 ORTHO05D009839 6.0e-34 148.3 183 45.9
Potri.019G049100 Populus trichocarpa HOM05D007902 ORTHO05D009839 1.1e-32 144.1 161 47.8
Dinv21823 Davidia involucrata HOM05D007902 ORTHO05D009839 9.6e-32 141.0 183 43.7
QL08p064506 Quercus lobata HOM05D007902 ORTHO05D009839 1.3e-31 140.6 187 46.0
Ciclev10032767m.g Citrus clementina HOM05D007902 ORTHO05D009839 1.6e-31 140.2 178 44.4
A03p43050 Brassica napus HOM05D007902 ORTHO05D009839 2.1e-31 139.8 96 78.1
A09p12450 Brassica napus HOM05D007902 ORTHO05D009839 3.7e-31 139.0 96 78.1
BraA07t29812Z Brassica rapa HOM05D007902 ORTHO05D009839 1.1e-30 137.5 81 86.4
Gohir.A13G005700 Gossypium hirsutum HOM05D007902 ORTHO05D009839 1.1e-30 137.5 172 46.5
Haze_17334 Corylus avellana HOM05D007902 ORTHO05D009839 5.3e-30 135.2 176 46.6
Actinidia07804 Actinidia chinensis HOM05D007902 ORTHO05D009839 6.9e-30 134.8 177 46.3
Hma1.2p1_0292F.1_g115760 Hydrangea macrophylla HOM05D007902 ORTHO05D009839 9.0e-30 134.4 178 44.9
Gorai.013G006100 Gossypium raimondii HOM05D007902 ORTHO05D009839 1.5e-29 133.7 172 45.9
Gohir.D13G005400 Gossypium hirsutum HOM05D007902 ORTHO05D009839 2.6e-29 132.9 183 44.3
Sabra19G0058600 Salix brachista HOM05D007902 ORTHO05D009839 2.6e-29 132.9 191 41.4
CAN.G591.5 Capsicum annuum HOM05D007902 ORTHO05D009839 5.0e-28 128.6 182 40.7
Lsat_1_v5_gn_9_59200 Lactuca sativa HOM05D007902 ORTHO05D009839 7.2e-27 124.8 178 43.3
Peaxi162Scf00464g00015 Petunia axillaris HOM05D007902 ORTHO05D009839 7.2e-27 124.8 175 40.0
Migut.F00588 Erythranthe guttata HOM05D007902 ORTHO05D009839 1.2e-26 124.0 157 43.3
EL10Ac2g04265 Beta vulgaris HOM05D007902 ORTHO05D009839 1.6e-26 123.6 171 42.1
Nn2g10362 Nelumbo nucifera HOM05D007902 ORTHO05D009839 1.6e-26 123.6 178 41.6
Eucgr.G03123 Eucalyptus grandis HOM05D007902 ORTHO05D009839 2.7e-26 122.9 160 45.0
vmacro09979 Vaccinium macrocarpon HOM05D007902 ORTHO05D009839 2.7e-26 122.9 150 42.7
CiPaw.01G304600 Carya illinoinensis HOM05D007902 ORTHO05D009839 3.5e-26 122.5 165 44.2
Aqoxy4G02352 Aquilegia oxysepala HOM05D007902 ORTHO05D009839 4.6e-26 122.1 193 38.3
CANSAT56G3130 Cannabis sativa HOM05D007902 ORTHO05D009839 6.1e-26 121.7 187 36.9
HanXRQChr09g0251491 Helianthus annuus HOM05D007902 ORTHO05D009839 7.9e-26 121.3 160 45.6
Prupe.2G261300 Prunus persica HOM05D007902 ORTHO05D009839 3.0e-25 119.4 186 43.0
Sopen06g015820 Solanum pennellii HOM05D007902 ORTHO05D009839 1.1e-24 117.5 160 42.5
Cc02_g05590 Coffea canephora HOM05D007902 ORTHO05D009839 2.5e-24 116.3 186 40.3
A10p30870 Brassica napus HOM05D000044 ORTHO05D000051 5.7e-24 115.2 108 63.0
RcHm_v2.0_Chr1g0371741 Rosa chinensis HOM05D007902 ORTHO05D009839 5.7e-24 115.2 175 42.9
COL.COLO4_26867 Corchorus olitorius HOM05D005928 ORTHO05D007500 7.4e-24 114.8 164 41.5
arahy.Tifrunner.gnm1.ann1.C7E7HV Arachis hypogaea HOM05D007902 ORTHO05D009839 1.3e-23 114.0 159 40.3
arahy.Tifrunner.gnm1.ann1.0H4UJT Arachis hypogaea HOM05D007902 ORTHO05D009839 2.8e-23 112.8 159 39.6
SalBow5G2004 Salvia bowleyana HOM05D007902 ORTHO05D009839 2.8e-23 112.8 175 41.1
Thecc.10G175100 Theobroma cacao HOM05D007902 ORTHO05D009839 4.8e-23 112.1 180 44.4
Hund13474 Selenicereus undatus HOM05D007902 ORTHO05D009839 8.2e-23 111.3 201 36.3
Ca_06023_v3 Cicer arietinum L. HOM05D007902 ORTHO05D009839 1.1e-22 110.9 162 43.8
FvH4_7g25601 Fragaria vesca HOM05D007902 ORTHO05D009839 1.1e-22 110.9 158 43.7
MD07G1231300 Malus domestica HOM05D007902 ORTHO05D009839 1.4e-22 110.5 180 43.3
MD01G1163300 Malus domestica HOM05D007902 ORTHO05D009839 2.4e-22 109.8 169 42.0
PGR142G4074 Punica granatum HOM05D007902 ORTHO05D009839 2.4e-22 109.8 190 38.4
FAN01G1070 Fragaria x ananassa HOM05D001122 ORTHO05D001877 3.1e-22 109.4 157 43.3
TWI53G0910 Tripterygium wilfordii HOM05D007902 ORTHO05D009839 3.1e-22 109.4 151 42.4
FAN03G2841 Fragaria x ananassa HOM05D001122 ORTHO05D001877 4.1e-22 109.0 156 42.9
A08p12840 Brassica napus HOM05D007902 ORTHO05D009839 5.3e-22 108.6 92 68.5
PSO017G6410 Papaver somniferum HOM05D007902 ORTHO05D009839 8.5e-20 101.3 196 36.7
Psat1g014880 Pisum sativum HOM05D007902 ORTHO05D009839 3.6e-18 95.9 167 36.5
FAN06G1561 Fragaria x ananassa HOM05D007902 ORTHO05D009839 1.4e-17 94.0 173 41.0
PSO407G0011 Papaver somniferum HOM05D007902 ORTHO05D009839 2.3e-17 93.2 155 40.0
Rhsim09G0183800 Rhododendron simsii HOM05D007902 ORTHO05D009839 2.3e-17 93.2 211 34.6
Atru.chr12.150 Acer truncatum HOM05D005928 ORTHO05D007500 5.1e-17 92.0 178 38.2
Medtr0191s0020 Medicago truncatula HOM05D007902 ORTHO05D009839 5.1e-17 92.0 180 38.3
BcaNung01853 Brassica carinata HOM05D003223 ORTHO05D014735 1.1e-16 90.9 61 78.7
Nitab4.5_0002713g0030 Nicotiana tabacum HOM05D007902 ORTHO05D009839 7.4e-16 88.2 159 35.8
PGSC0003DMG400029078 Solanum tuberosum HOM05D007902 ORTHO05D009839 1.3e-15 87.4 120 41.7
SGA_v2.0_scaffold60G20910 Striga asiatica HOM05D005928 ORTHO05D007500 1.3e-15 87.4 198 32.8
TAR623G0840 Trochodendron aralioides HOM05D007902 ORTHO05D009839 1.3e-15 87.4 84 56.0
Nitab4.5_0000263g0270 Nicotiana tabacum HOM05D007902 ORTHO05D009839 4.8e-15 85.5 159 36.5
Sc10g0002880 Simmondsia chinensis HOM05D007902 ORTHO05D009839 3.1e-14 82.8 84 52.4
Hund09512 Selenicereus undatus HOM05D000727 ORTHO05D000541 2.9e-12 76.3 196 29.6
Lj1C1068G17 Lonicera japonica HOM05D004500 ORTHO05D009839 3.8e-12 75.9 148 34.5
unitig_52.g16781 Utricularia gibba HOM05D007902 ORTHO05D009839 3.8e-12 75.9 153 34.0
BolC4t25019H Brassica oleracea HOM05D000108 ORTHO05D012076 6.5e-12 75.1 56 71.4
Ah.01g011600 Amaranthus hybridus HOM05D000727 ORTHO05D000541 2.5e-11 73.2 201 30.3
LjContig00357g0001230 Lotus japonicus HOM05D007902 ORTHO05D009839 2.5e-11 73.2 168 31.5
AUR62017747 Chenopodium quinoa HOM05D000727 ORTHO05D000541 3.2e-11 72.8 190 28.4
AUR62032906 Chenopodium quinoa HOM05D000727 ORTHO05D000541 5.5e-11 72.0 190 27.9
ATR0124G023 Amborella trichopoda HOM05D000727 ORTHO05D000541 7.2e-11 71.6 183 29.5
Duzib248G1122 Durio zibethinus HOM05D000727 ORTHO05D000541 1.2e-10 70.9 168 31.0
CDE07G0481 Ceratophyllum demersum HOM05D007902 ORTHO05D009839 2.1e-10 70.1 130 36.9
Duzib132G0609 Durio zibethinus HOM05D000727 ORTHO05D000541 2.1e-10 70.1 168 30.4
BolC4t23447H Brassica oleracea HOM05D013651 ORTHO05D013480 2.7e-10 69.7 108 41.7
BolC7t44774H Brassica oleracea HOM05D013651 ORTHO05D013480 2.7e-10 69.7 108 41.7
Nn3g18557 Nelumbo nucifera HOM05D000727 ORTHO05D000541 2.7e-10 69.7 208 28.8
Oeu054429.1 Olea europaea HOM05D007902 ORTHO05D009839 4.7e-10 68.9 156 34.6
TWI53G1801 Tripterygium wilfordii HOM05D000727 ORTHO05D000541 4.7e-10 68.9 154 30.5
Sc25g0001400 Simmondsia chinensis HOM05D000727 ORTHO05D000541 1.0e-09 67.8 189 27.0
COL.COLO4_08802 Corchorus olitorius HOM05D000576 ORTHO05D000368 1.4e-09 67.4 60 61.7
HPP92_014761 Vanilla planifolia HOM05D000727 ORTHO05D000541 1.4e-09 67.4 150 30.7
BolC6t36021H Brassica oleracea HOM05D013651 ORTHO05D013480 1.8e-09 67.0 108 40.7
PGR044G1367 Punica granatum HOM05D000727 ORTHO05D000541 1.8e-09 67.0 167 29.3
Dinv02932 Davidia involucrata HOM05D000727 ORTHO05D000541 2.3e-09 66.6 181 27.6
THA.LOC104818386 Tarenaya hassleriana HOM05D000727 ORTHO05D000541 2.3e-09 66.6 172 27.9
Os08g0101100 Oryza sativa ssp. japonica HOM05D000727 ORTHO05D000541 3.0e-09 66.2 154 29.2
CDE04G2894 Ceratophyllum demersum HOM05D004203 ORTHO05D004830 3.9e-09 65.9 161 27.3
Lalb_Chr17g0347071 Lupinus albus HOM05D007902 ORTHO05D009839 3.9e-09 65.9 89 38.2
Oeu036108.1 Olea europaea HOM05D000727 ORTHO05D000541 3.9e-09 65.9 190 27.4
PSO339G3557 Papaver somniferum HOM05D000727 ORTHO05D000541 3.9e-09 65.9 169 27.8
RhsimUnG0102400 Rhododendron simsii HOM05D000727 ORTHO05D000541 3.9e-09 65.9 159 29.6
GSVIVG01034361001 Vitis vinifera HOM05D000727 ORTHO05D000541 3.9e-09 65.9 214 27.1
BolC3t20084H Brassica oleracea HOM05D013651 ORTHO05D013480 5.1e-09 65.5 105 40.0
BolC4t26224H Brassica oleracea HOM05D007902 ORTHO05D009839 5.1e-09 65.5 36 91.7
TAR622G0466 Trochodendron aralioides HOM05D000727 ORTHO05D000541 5.1e-09 65.5 203 29.6
Aqoxy3G04324 Aquilegia oxysepala HOM05D000727 ORTHO05D000541 6.7e-09 65.1 188 25.5
AL6G30600 Arabidopsis lyrata HOM05D000727 ORTHO05D000541 8.8e-09 64.7 167 26.3
Solyc04g008820.3 Solanum lycopersicum HOM05D000727 ORTHO05D000541 8.8e-09 64.7 180 26.7
AL6G34700 Arabidopsis lyrata HOM05D000727 ORTHO05D000541 1.1e-08 64.3 170 27.1
AT5G23420 Arabidopsis thaliana HOM05D000727 ORTHO05D000541 1.1e-08 64.3 170 27.1
PSO206G0034 Papaver somniferum HOM05D000727 ORTHO05D000541 1.1e-08 64.3 169 27.2
Actinidia04069 Actinidia chinensis HOM05D000727 ORTHO05D000541 1.5e-08 63.9 187 23.0
BcaC02g09961 Brassica carinata HOM05D001334 ORTHO05D001119 1.5e-08 63.9 48 72.9
BcaB04g19869 Brassica carinata HOM05D000727 ORTHO05D000541 2.0e-08 63.5 173 26.6
MBI03_g13448_MAGBIO Magnolia biondii HOM05D000727 ORTHO05D000541 2.0e-08 63.5 205 25.9
Thecc.02G153200 Theobroma cacao HOM05D000727 ORTHO05D000541 2.0e-08 63.5 209 26.3
PGSC0003DMG400025304 Solanum tuberosum HOM05D000727 ORTHO05D000541 2.6e-08 63.2 166 26.5
COL.COLO4_33133 Corchorus olitorius HOM05D000727 ORTHO05D000541 3.3e-08 62.8 174 27.6
Sopen04g004000 Solanum pennellii HOM05D000727 ORTHO05D000541 3.3e-08 62.8 166 26.5
CsaV3_5G021890 Cucumis sativus L. HOM05D000727 ORTHO05D000541 4.4e-08 62.4 165 28.5
Atru.chr11.63 Acer truncatum HOM05D000727 ORTHO05D000541 5.7e-08 62.0 160 27.5
Cpa.g.sc247.1 Carica papaya HOM05D000727 ORTHO05D000541 5.7e-08 62.0 158 29.7
DCAR_030351 Daucus carota HOM05D000727 ORTHO05D000541 7.4e-08 61.6 160 25.6
Nitab4.5_0002707g0040 Nicotiana tabacum HOM05D000727 ORTHO05D000541 7.4e-08 61.6 180 26.1
Eucgr.J00336 Eucalyptus grandis HOM05D000727 ORTHO05D000541 9.7e-08 61.2 167 27.5
Thhalv10004817m.g Eutrema salsugineum HOM05D000727 ORTHO05D000541 9.7e-08 61.2 240 25.8
Prupe.1G350700 Prunus persica HOM05D000727 ORTHO05D000541 9.7e-08 61.2 166 26.5
arahy.Tifrunner.gnm1.ann1.BLWT23 Arachis hypogaea HOM05D000727 ORTHO05D000541 1.3e-07 60.8 163 26.4
Cc11_g04510 Coffea canephora HOM05D000727 ORTHO05D000541 1.3e-07 60.8 143 30.8
Glyma.20G100600 Glycine max HOM05D000727 ORTHO05D000541 1.3e-07 60.8 186 25.8
Ciclev10016587m.g Citrus clementina HOM05D000727 ORTHO05D000541 1.7e-07 60.5 220 24.5
Gorai.008G147700 Gossypium raimondii HOM05D000727 ORTHO05D000541 2.2e-07 60.1 211 28.0
Aa31LG11G2850 Aethionema arabicum HOM05D000727 ORTHO05D000541 2.8e-07 59.7 216 25.5
HanXRQChr17g0540661 Helianthus annuus HOM05D000727 ORTHO05D000541 2.8e-07 59.7 215 27.0
Lalb_Chr02g0144141 Lupinus albus HOM05D000727 ORTHO05D000541 2.8e-07 59.7 199 27.1
BcaNung03729 Brassica carinata HOM05D000727 ORTHO05D000541 3.7e-07 59.3 147 26.5
CSS0018830 Camellia sinensis var. sinensis HOM05D000727 ORTHO05D000541 3.7e-07 59.3 193 26.9
Ca_11274_v3 Cicer arietinum L. HOM05D000727 ORTHO05D000541 3.7e-07 59.3 186 26.9
Gohir.A12G133000 Gossypium hirsutum HOM05D000727 ORTHO05D000541 4.8e-07 58.9 213 27.7
BraA02t09046Z Brassica rapa HOM05D000727 ORTHO05D000541 6.3e-07 58.5 205 25.4
ECA232G2170 Erigeron canadensis HOM05D001122 ORTHO05D001877 6.3e-07 58.5 106 35.8
MSTRG.13668 Avicennia marina HOM05D000727 ORTHO05D000541 8.2e-07 58.2 163 28.2
Carub.0006s2120 Capsella rubella HOM05D000727 ORTHO05D000541 8.2e-07 58.2 227 24.2
Gohir.D12G136500 Gossypium hirsutum HOM05D000727 ORTHO05D000541 8.2e-07 58.2 189 28.0
Hma1.2p1_0513F.1_g169510 Hydrangea macrophylla HOM05D000727 ORTHO05D000541 1.1e-06 57.8 194 26.8
MD13G1001900 Malus domestica HOM05D000727 ORTHO05D000541 1.1e-06 57.8 214 25.7
A09p06950 Brassica napus HOM05D000727 ORTHO05D000541 1.4e-06 57.4 177 25.4
BraA09t36343Z Brassica rapa HOM05D000727 ORTHO05D000541 1.4e-06 57.4 177 25.4
ECA246G0005 Erigeron canadensis HOM05D000727 ORTHO05D000541 1.4e-06 57.4 202 23.8
SGA_v2.0_scaffold127G33972 Striga asiatica HOM05D000727 ORTHO05D000541 1.4e-06 57.4 163 27.6
Phvul.007G012700 Phaseolus vulgaris HOM05D000727 ORTHO05D000541 1.8e-06 57.0 197 24.4
SEGI_37508 Sequoiadendron giganteum HOM05D000727 ORTHO05D000541 1.8e-06 57.0 189 25.4
BcaC04g23495 Brassica carinata HOM05D000727 ORTHO05D000541 2.4e-06 56.6 174 25.3
C09p07710 Brassica napus HOM05D000727 ORTHO05D000541 2.4e-06 56.6 174 25.3
BolC9t53688H Brassica oleracea HOM05D000727 ORTHO05D000541 2.4e-06 56.6 174 25.3
TWI74G1375 Tripterygium wilfordii HOM05D000727 ORTHO05D000541 3.1e-06 56.2 170 27.1
TPR.G4017 Trifolium pratense HOM05D000727 ORTHO05D000541 4.1e-06 55.8 200 25.0
MSTRG.2077 Avicennia marina HOM05D000727 ORTHO05D000541 5.3e-06 55.5 189 26.5
A02p40980 Brassica napus HOM05D000727 ORTHO05D000541 5.3e-06 55.5 185 24.3
Sp2g23750 Schrenkiella parvula HOM05D000727 ORTHO05D000541 5.3e-06 55.5 161 24.2
VMungo0720G2558 Vigna mungo HOM05D000727 ORTHO05D000541 5.3e-06 55.5 220 24.5
Dinv17654 Davidia involucrata HOM05D000727 ORTHO05D000541 7.0e-06 55.1 200 27.5
CAN.G419.9 Capsicum annuum HOM05D000727 ORTHO05D000541 9.1e-06 54.7 164 22.6
Haze_17405 Corylus avellana HOM05D000727 ORTHO05D000541 9.1e-06 54.7 173 24.9


User provided reference genes

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