Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g32228 Brassica carinata HOM05D010812 ORTHO05D004682 0.0e+00 1088.2 581 100.0
BraA10t45145Z Brassica rapa HOM05D010812 ORTHO05D004682 2.9e-220 768.8 571 77.1
A10p31000 Brassica napus HOM05D010812 ORTHO05D004682 1.3e-217 760.0 572 76.7
C09p71510 Brassica napus HOM05D010812 ORTHO05D004682 1.8e-214 749.6 575 75.8
Thhalv10013098m.g Eutrema salsugineum HOM05D010812 ORTHO05D004682 3.1e-198 695.7 585 69.7
Sp6g37640 Schrenkiella parvula HOM05D010812 ORTHO05D004682 1.4e-195 686.8 585 69.6
BcaB01g05719 Brassica carinata HOM05D010812 ORTHO05D004682 2.1e-178 629.8 687 59.1
AT5G05190 Arabidopsis thaliana HOM05D010812 ORTHO05D004682 2.7e-170 602.8 611 60.6
BraA03t09587Z Brassica rapa HOM05D010812 ORTHO05D004682 4.8e-167 592.0 653 59.1
C03p02570 Brassica napus HOM05D010812 ORTHO05D004682 4.1e-166 589.0 652 59.2
BolC3t12809H Brassica oleracea HOM05D010812 ORTHO05D004682 2.9e-164 582.8 652 58.9
BcaB01g05942 Brassica carinata HOM05D010812 ORTHO05D004682 1.1e-163 580.9 652 58.7
A03p02230 Brassica napus HOM05D010812 ORTHO05D004682 2.1e-162 576.6 688 55.8
AL6G15030 Arabidopsis lyrata HOM05D010812 ORTHO05D004682 1.7e-159 567.0 606 58.1
Carub.0006s0412 Capsella rubella HOM05D010812 ORTHO05D004682 4.0e-153 545.8 647 54.9
CARHR208070 Cardamine hirsuta HOM05D010812 ORTHO05D004682 2.8e-138 496.5 572 57.2
Aa31LG11G6050 Aethionema arabicum HOM05D010812 ORTHO05D004682 2.3e-84 317.4 665 41.2
THA.LOC104816507 Tarenaya hassleriana HOM05D010812 ORTHO05D004682 1.1e-73 282.0 595 38.8
THA.LOC104826873 Tarenaya hassleriana HOM05D010812 ORTHO05D004682 4.1e-73 280.0 584 38.5
Gohir.A13G007900 Gossypium hirsutum HOM05D005345 ORTHO05D004682 7.0e-25 119.8 613 26.3
MD01G1169800 Malus domestica HOM05D005345 ORTHO05D004682 1.2e-24 119.0 131 50.4
Gorai.013G008500 Gossypium raimondii HOM05D005345 ORTHO05D004682 6.0e-24 116.7 610 26.4
Gohir.D13G008100 Gossypium hirsutum HOM05D005345 ORTHO05D004682 7.8e-24 116.3 610 26.1
COL.COLO4_19477 Corchorus olitorius HOM05D005345 ORTHO05D004682 1.0e-23 115.9 129 50.4
Thecc.10G185200 Theobroma cacao HOM05D005345 ORTHO05D004682 1.7e-23 115.2 129 49.6
MD07G1235500 Malus domestica HOM05D005345 ORTHO05D004682 2.3e-23 114.8 129 48.8
Duzib106G0455 Durio zibethinus HOM05D005345 ORTHO05D004682 3.9e-23 114.0 129 50.4
Manes.07G142000 Manihot esculenta HOM05D005345 ORTHO05D004682 8.6e-23 112.8 134 47.0
Ciclev10030619m.g Citrus clementina HOM05D005345 ORTHO05D004682 1.1e-22 112.5 114 51.8
Gohir.A10G177500 Gossypium hirsutum HOM05D005345 ORTHO05D004682 4.3e-22 110.5 119 51.3
Duzib128G0800 Durio zibethinus HOM05D005345 ORTHO05D004682 9.5e-22 109.4 119 48.7
Gorai.011G206300 Gossypium raimondii HOM05D005345 ORTHO05D004682 2.8e-21 107.8 119 50.4
Manes.10G003400 Manihot esculenta HOM05D005345 ORTHO05D004682 2.8e-21 107.8 130 46.9
CANSAT56G0683 Cannabis sativa HOM05D005345 ORTHO05D004682 4.7e-21 107.1 166 41.6
Sabra19G0075200 Salix brachista HOM05D005345 ORTHO05D004682 2.0e-19 101.7 161 40.4
Atru.chr12.192 Acer truncatum HOM05D005345 ORTHO05D004682 4.4e-19 100.5 156 38.5
Potri.019G061400 Populus trichocarpa HOM05D005345 ORTHO05D004682 4.4e-19 100.5 131 45.0
Haze_17372 Corylus avellana HOM05D005345 ORTHO05D004682 5.8e-19 100.1 128 43.0
Cpa.g.sc19.39 Carica papaya HOM05D005345 ORTHO05D004682 7.5e-19 99.8 646 26.8
Oeu018746.1 Olea europaea HOM05D005345 ORTHO05D004682 9.8e-19 99.4 78 57.7
Oeu018747.2 Olea europaea HOM05D005345 ORTHO05D004682 9.8e-19 99.4 78 57.7
Prupe.2G265800 Prunus persica HOM05D005345 ORTHO05D004682 9.8e-19 99.4 158 39.9
Eucgr.J00102 Eucalyptus grandis HOM05D005345 ORTHO05D004682 1.3e-18 99.0 724 24.7
PGSC0003DMG400022956 Solanum tuberosum HOM05D005345 ORTHO05D004682 1.7e-18 98.6 102 48.0
Cc02_g05190 Coffea canephora HOM05D005345 ORTHO05D004682 2.2e-18 98.2 124 43.5
Sopen03g025560 Solanum pennellii HOM05D005345 ORTHO05D004682 2.9e-18 97.8 102 48.0
ClCG11G005600 Citrullus lanatus HOM05D005345 ORTHO05D004682 3.7e-18 97.4 125 42.4
FAN10G1366 Fragaria x ananassa HOM05D005345 ORTHO05D004682 3.7e-18 97.4 133 40.6
CsaV3_6G002400 Cucumis sativus L. HOM05D005345 ORTHO05D004682 4.9e-18 97.1 125 44.0
FAN01G1672 Fragaria x ananassa HOM05D005345 ORTHO05D004682 4.9e-18 97.1 133 41.4
Nitab4.5_0005979g0010 Nicotiana tabacum HOM05D005345 ORTHO05D004682 4.9e-18 97.1 117 46.2
Lalb_Chr10g0102841 Lupinus albus HOM05D005345 ORTHO05D004682 6.4e-18 96.7 118 44.1
Nitab4.5_0000171g0310 Nicotiana tabacum HOM05D005345 ORTHO05D004682 6.4e-18 96.7 114 46.5
Solyc03g095610.4 Solanum lycopersicum HOM05D005345 ORTHO05D004682 6.4e-18 96.7 128 43.8
Dinv34499 Davidia involucrata HOM05D005345 ORTHO05D004682 1.1e-17 95.9 361 28.8
FvH4_7g26160 Fragaria vesca HOM05D005345 ORTHO05D004682 2.4e-17 94.7 133 40.6
FAN06G3940 Fragaria x ananassa HOM05D005345 ORTHO05D004682 2.4e-17 94.7 133 40.6
Actinidia07784 Actinidia chinensis HOM05D005345 ORTHO05D004682 4.1e-17 94.0 118 44.1
arahy.Tifrunner.gnm1.ann1.0QV8DZ Arachis hypogaea HOM05D005345 ORTHO05D004682 4.1e-17 94.0 130 42.3
arahy.Tifrunner.gnm1.ann1.A39QJ2 Arachis hypogaea HOM05D005345 ORTHO05D004682 4.1e-17 94.0 130 42.3
Gohir.A05G404400 Gossypium hirsutum HOM05D005345 ORTHO05D004682 4.1e-17 94.0 607 26.9
Peaxi162Scf00073g00227 Petunia axillaris HOM05D005345 ORTHO05D004682 4.1e-17 94.0 102 47.1
CAN.G1229.5 Capsicum annuum HOM05D005345 ORTHO05D004682 5.4e-17 93.6 154 39.6
TWI53G1830 Tripterygium wilfordii HOM05D005345 ORTHO05D004682 7.1e-17 93.2 185 36.2
CSS0024314 Camellia sinensis var. sinensis HOM05D005345 ORTHO05D004682 9.2e-17 92.8 121 43.0
Glyma.02G219400 Glycine max HOM05D005345 ORTHO05D004682 9.2e-17 92.8 116 44.0
Medtr3g093780 Medicago truncatula HOM05D005345 ORTHO05D004682 1.2e-16 92.4 77 50.6
MSTRG.27252 Avicennia marina HOM05D005345 ORTHO05D004682 1.6e-16 92.0 76 52.6
MSTRG.8382 Avicennia marina HOM05D005345 ORTHO05D004682 2.7e-16 91.3 70 62.9
MELO3C020021.2 Cucumis melo HOM05D005345 ORTHO05D004682 2.7e-16 91.3 125 41.6
Sed0015893 Sechium edule HOM05D005345 ORTHO05D004682 2.7e-16 91.3 70 54.3
DCAR_009470 Daucus carota HOM05D005345 ORTHO05D004682 3.5e-16 90.9 166 34.3
TWI09G1031 Tripterygium wilfordii HOM05D005345 ORTHO05D004682 3.5e-16 90.9 129 41.1
TPR.G33944 Trifolium pratense HOM05D005345 ORTHO05D004682 4.6e-16 90.5 176 33.5
CSS0033913 Camellia sinensis var. sinensis HOM05D005345 ORTHO05D004682 6.0e-16 90.1 134 41.8
Lj8C52G7 Lonicera japonica HOM05D005345 ORTHO05D004682 7.8e-16 89.7 118 41.5
QL08p065100 Quercus lobata HOM05D005345 ORTHO05D004682 7.8e-16 89.7 671 22.7
TAR369G0882 Trochodendron aralioides HOM05D005345 ORTHO05D004682 1.0e-15 89.4 76 52.6
GSVIVG01032655001 Vitis vinifera HOM05D005345 ORTHO05D004682 1.0e-15 89.4 201 32.3
Ca_16857_v3 Cicer arietinum L. HOM05D005345 ORTHO05D004682 1.3e-15 89.0 88 47.7
Ca_23243_v3 Cicer arietinum L. HOM05D005345 ORTHO05D004682 1.3e-15 89.0 646 23.8
Ca_29505_v3 Cicer arietinum L. HOM05D005345 ORTHO05D004682 1.3e-15 89.0 88 47.7
Sc10g0003070 Simmondsia chinensis HOM05D005345 ORTHO05D004682 1.7e-15 88.6 384 28.4
Dinv21859 Davidia involucrata HOM05D005345 ORTHO05D004682 2.3e-15 88.2 120 39.2
Gorai.012G013500 Gossypium raimondii HOM05D005345 ORTHO05D004682 3.0e-15 87.8 615 24.9
TAR636G0005 Trochodendron aralioides HOM05D005345 ORTHO05D004682 3.0e-15 87.8 118 43.2
MBI03_g40812_MAGBIO Magnolia biondii HOM05D002045 ORTHO05D002014 3.9e-15 87.4 67 56.7
vmacro09953 Vaccinium macrocarpon HOM05D005345 ORTHO05D004682 3.9e-15 87.4 122 41.0
Oeu064002.1 Olea europaea HOM05D005345 ORTHO05D004682 5.1e-15 87.0 78 52.6
Rhsim03G0153800 Rhododendron simsii HOM05D005345 ORTHO05D004682 5.1e-15 87.0 122 40.2
RcHm_v2.0_Chr1g0372591 Rosa chinensis HOM05D005345 ORTHO05D004682 5.1e-15 87.0 150 36.7
DCAR_018044 Daucus carota HOM05D005345 ORTHO05D004682 6.6e-15 86.7 161 37.3
Migut.F00566 Erythranthe guttata HOM05D005345 ORTHO05D004682 8.6e-15 86.3 609 22.7
Glyma.14G186800 Glycine max HOM05D005345 ORTHO05D004682 8.6e-15 86.3 120 39.2
SGA_v2.0_scaffold60G20878 Striga asiatica HOM05D005345 ORTHO05D004682 8.6e-15 86.3 634 25.2
Gohir.D04G011300 Gossypium hirsutum HOM05D005345 ORTHO05D004682 1.9e-14 85.1 610 25.7
VMungo1309G1748 Vigna mungo HOM05D005345 ORTHO05D004682 2.5e-14 84.7 188 37.2
Nn5g26827 Nelumbo nucifera HOM05D005345 ORTHO05D004682 3.3e-14 84.3 130 37.7
Psat2g061880 Pisum sativum HOM05D005345 ORTHO05D004682 3.3e-14 84.3 204 34.3
ECA238G0953 Erigeron canadensis HOM05D005345 ORTHO05D004682 4.3e-14 84.0 211 31.8
TPR.G13957 Trifolium pratense HOM05D005345 ORTHO05D004682 4.3e-14 84.0 68 55.9
Actinidia13637 Actinidia chinensis HOM05D005345 ORTHO05D004682 5.6e-14 83.6 71 52.1
Rhsim09G0186300 Rhododendron simsii HOM05D005345 ORTHO05D004682 5.6e-14 83.6 122 41.8
Phvul.009G042600 Phaseolus vulgaris HOM05D005345 ORTHO05D004682 9.5e-14 82.8 177 36.7
THA.LOC104824598 Tarenaya hassleriana HOM05D010499 ORTHO05D013671 9.5e-14 82.8 235 32.3
Phvul.008G186500 Phaseolus vulgaris HOM05D005345 ORTHO05D004682 1.2e-13 82.4 237 29.5
Psat5g069400 Pisum sativum HOM05D005345 ORTHO05D004682 1.6e-13 82.0 200 33.0
Eucgr.G03149 Eucalyptus grandis HOM05D005345 ORTHO05D004682 2.1e-13 81.6 72 47.2
TAR623G1626 Trochodendron aralioides HOM05D005345 ORTHO05D004682 2.1e-13 81.6 626 25.4
Oeu006068.1 Olea europaea HOM05D005345 ORTHO05D004682 2.8e-13 81.3 111 44.1
Sed0004419 Sechium edule HOM05D005345 ORTHO05D004682 2.8e-13 81.3 309 25.6
DCAR_020155 Daucus carota HOM05D005345 ORTHO05D004682 8.1e-13 79.7 710 22.5
PGR044G0353 Punica granatum HOM05D005345 ORTHO05D004682 8.1e-13 79.7 121 38.8
Hund13436 Selenicereus undatus HOM05D005345 ORTHO05D004682 1.4e-12 79.0 153 34.6
Hund15794 Selenicereus undatus HOM05D005345 ORTHO05D004682 1.4e-12 79.0 152 35.5
TAR633G2169 Trochodendron aralioides HOM05D005345 ORTHO05D004682 1.4e-12 79.0 702 22.5
Lsat_1_v5_gn_2_126680 Lactuca sativa HOM05D005345 ORTHO05D004682 2.3e-12 78.2 641 23.9
Medtr5g068060 Medicago truncatula HOM05D005345 ORTHO05D004682 3.1e-12 77.8 219 29.2
Aqoxy4G03281 Aquilegia oxysepala HOM05D005345 ORTHO05D004682 4.0e-12 77.4 153 34.6
THA.LOC104814291 Tarenaya hassleriana HOM05D010499 ORTHO05D013671 4.0e-12 77.4 209 33.5
Lalb_Chr08g0239261 Lupinus albus HOM05D005345 ORTHO05D004682 5.2e-12 77.0 69 47.8
Glyma.06G141400 Glycine max HOM05D005345 ORTHO05D004682 6.8e-12 76.6 196 35.2
vmacro06904 Vaccinium macrocarpon HOM05D005345 ORTHO05D004682 8.9e-12 76.3 411 25.3
HanXRQChr14g0460501 Helianthus annuus HOM05D005345 ORTHO05D004682 1.2e-11 75.9 321 27.4
LjContig00408g0007312 Lotus japonicus HOM05D005345 ORTHO05D004682 1.2e-11 75.9 330 28.5
Ah.11g042470 Amaranthus hybridus HOM05D005345 ORTHO05D004682 2.0e-11 75.1 343 28.9
HanXRQChr07g0204951 Helianthus annuus HOM05D005345 ORTHO05D004682 3.4e-11 74.3 610 23.9
arahy.Tifrunner.gnm1.ann1.E2ZVAX Arachis hypogaea HOM05D005345 ORTHO05D004682 2.9e-10 71.2 124 38.7
SGA_v2.0_scaffold44G16618 Striga asiatica HOM05D005345 ORTHO05D004682 2.9e-10 71.2 557 27.1
PSO135G1064 Papaver somniferum HOM05D002045 ORTHO05D002014 6.4e-10 70.1 631 21.7
arahy.Tifrunner.gnm1.ann1.DZPX8Q Arachis hypogaea HOM05D005345 ORTHO05D004682 8.3e-10 69.7 124 38.7
Lj1A968T60 Lonicera japonica HOM05D005345 ORTHO05D004682 1.1e-09 69.3 329 28.0
EL10Ac5g10466 Beta vulgaris HOM05D005345 ORTHO05D004682 1.4e-09 68.9 547 25.2
Carub.0005s2836 Capsella rubella HOM05D002045 ORTHO05D002014 1.9e-09 68.6 549 24.6
Thhalv10005743m.g Eutrema salsugineum HOM05D010499 ORTHO05D013671 2.4e-09 68.2 219 31.1
Oeu039387.1 Olea europaea HOM05D005345 ORTHO05D004682 4.1e-09 67.4 709 23.3
Lalb_Chr11g0067691 Lupinus albus HOM05D005345 ORTHO05D004682 5.4e-09 67.0 80 36.2
CARHR166540 Cardamine hirsuta HOM05D010499 ORTHO05D013671 9.2e-09 66.2 201 31.3
AL5G37740 Arabidopsis lyrata HOM05D010499 ORTHO05D013671 1.2e-08 65.9 69 47.8
TAR629G3516 Trochodendron aralioides HOM05D002045 ORTHO05D002014 1.2e-08 65.9 137 34.3
CiPaw.01G307600 Carya illinoinensis HOM05D005345 ORTHO05D004682 1.6e-08 65.5 149 34.2
ATR1100G028 Amborella trichopoda HOM05D002045 ORTHO05D002014 2.1e-08 65.1 49 59.2
BcaB02g07653 Brassica carinata HOM05D010499 ORTHO05D013671 2.1e-08 65.1 262 27.1
Gohir.D10G184100 Gossypium hirsutum HOM05D005345 ORTHO05D004682 2.1e-08 65.1 172 31.4
Gohir.A11G095600 Gossypium hirsutum HOM05D002045 ORTHO05D002014 4.6e-08 63.9 567 24.7
BolC6t37526H Brassica oleracea HOM05D010499 ORTHO05D013671 6.0e-08 63.5 209 28.7
BcaC08g44783 Brassica carinata HOM05D010499 ORTHO05D013671 7.8e-08 63.2 213 26.3
C06p23550 Brassica napus HOM05D010499 ORTHO05D013671 7.8e-08 63.2 210 28.6
unitig_46.g18752 Utricularia gibba HOM05D005345 ORTHO05D004682 7.8e-08 63.2 64 43.8
ATR1127G123 Amborella trichopoda HOM05D002045 ORTHO05D002014 1.0e-07 62.8 213 29.6
A07p22920 Brassica napus HOM05D010499 ORTHO05D013671 1.0e-07 62.8 202 28.2
Thecc.01G346100 Theobroma cacao HOM05D002045 ORTHO05D002014 1.0e-07 62.8 576 22.9
Gorai.007G106800 Gossypium raimondii HOM05D002045 ORTHO05D002014 1.3e-07 62.4 567 24.7
PSO384G3902 Papaver somniferum HOM05D002045 ORTHO05D002014 1.7e-07 62.0 629 22.1
PGR142G1797 Punica granatum HOM05D005345 ORTHO05D004682 1.7e-07 62.0 581 24.1
COL.COLO4_06319 Corchorus olitorius HOM05D002045 ORTHO05D002014 2.3e-07 61.6 592 23.5
HPP92_014261 Vanilla planifolia HOM05D025459 ORTHO05D004682 2.3e-07 61.6 54 53.7
Gohir.D11G100500 Gossypium hirsutum HOM05D002045 ORTHO05D002014 3.9e-07 60.8 573 23.7
Lsat_1_v5_gn_1_90561 Lactuca sativa HOM05D000041 ORTHO05D000452 3.9e-07 60.8 35 68.6
Rhsim01G0170600 Rhododendron simsii HOM05D002045 ORTHO05D002014 3.9e-07 60.8 51 52.9
Duzib133G0749 Durio zibethinus HOM05D002045 ORTHO05D002014 6.6e-07 60.1 588 24.3
Lj8C52G6 Lonicera japonica HOM05D005345 ORTHO05D004682 6.6e-07 60.1 44 56.8
BraA07t29958Z Brassica rapa HOM05D010499 ORTHO05D013671 1.1e-06 59.3 202 27.7
AUR62024949 Chenopodium quinoa HOM05D005345 ORTHO05D004682 1.1e-06 59.3 405 24.9
AUR62030590 Chenopodium quinoa HOM05D005345 ORTHO05D004682 1.1e-06 59.3 42 61.9
Duzib114G0792 Durio zibethinus HOM05D005345 ORTHO05D004682 1.1e-06 59.3 44 61.4
HPP92_022866 Vanilla planifolia HOM05D005345 ORTHO05D004682 1.9e-06 58.5 79 40.5
Thhalv10005787m.g Eutrema salsugineum HOM05D002045 ORTHO05D002014 2.5e-06 58.2 552 23.0
Lj1g0012895 Lotus japonicus HOM05D005345 ORTHO05D004682 2.5e-06 58.2 484 22.7
Oeu022861.2 Olea europaea HOM05D002045 ORTHO05D002014 3.3e-06 57.8 58 43.1
Sp5g06040 Schrenkiella parvula HOM05D010499 ORTHO05D013671 3.3e-06 57.8 214 27.1
CDE04G0305 Ceratophyllum demersum HOM05D025459 ORTHO05D004682 4.3e-06 57.4 148 27.7
SalBow1G3290 Salvia bowleyana HOM05D002045 ORTHO05D002014 4.3e-06 57.4 75 32.0
CSS0030482 Camellia sinensis var. sinensis HOM05D002045 ORTHO05D002014 5.6e-06 57.0 54 44.4
Os02g0464500 Oryza sativa ssp. japonica HOM05D032425 ORTHO05D036987 5.6e-06 57.0 52 46.2
Duzib138G1945 Durio zibethinus HOM05D002045 ORTHO05D002014 7.3e-06 56.6 589 23.9
MBI07_g24336_MAGBIO Magnolia biondii HOM05D002045 ORTHO05D002014 7.3e-06 56.6 93 35.5
RcHm_v2.0_Chr5g0080281 Rosa chinensis HOM05D000092 ORTHO05D000042 9.6e-06 56.2 37 70.3


User provided reference genes

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