Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g32135 Brassica carinata HOM05D002746 ORTHO05D027081 1.3e-303 1045.8 596 100.0
BolC9t59996H Brassica oleracea HOM05D002746 ORTHO05D003037 1.7e-191 673.3 678 68.3
C09p72570 Brassica napus HOM05D002746 ORTHO05D003037 1.4e-174 617.1 669 65.2
BraA10t45230Z Brassica rapa HOM05D002746 ORTHO05D003037 6.3e-170 601.7 687 62.4
A10p31850 Brassica napus HOM05D002746 ORTHO05D003037 1.5e-168 597.0 704 61.1
Sp6g38420 Schrenkiella parvula HOM05D002746 ORTHO05D003037 3.1e-108 396.7 614 48.7
A03p01620 Brassica napus HOM05D002746 ORTHO05D003037 1.2e-101 374.8 643 46.0
Thhalv10013000m.g Eutrema salsugineum HOM05D002746 ORTHO05D003037 2.7e-96 357.1 652 43.1
AT5G04320 Arabidopsis thaliana HOM05D002746 ORTHO05D003037 2.2e-90 337.4 563 44.8
AL6G13940 Arabidopsis lyrata HOM05D002746 ORTHO05D003037 5.8e-75 286.2 564 40.8
CARHR208960 Cardamine hirsuta HOM05D002746 ORTHO05D003037 2.8e-69 267.3 565 40.5
Carub.0006s0327 Capsella rubella HOM05D002746 ORTHO05D003037 1.6e-48 198.4 575 34.3
Aa31LG3G3050 Aethionema arabicum HOM05D002746 ORTHO05D003037 6.7e-39 166.4 535 34.8
BcaNung05796 Brassica carinata HOM05D002746 ORTHO05D003037 1.0e-34 152.5 147 66.7
CARHR084940 Cardamine hirsuta HOM05D002746 ORTHO05D003037 1.3e-34 152.1 649 30.5
THA.LOC104816434 Tarenaya hassleriana HOM05D002746 ORTHO05D003037 3.0e-31 141.0 307 38.8
BolC3t12751H Brassica oleracea HOM05D002746 ORTHO05D027081 4.4e-30 137.1 139 64.7
AT3G10440 Arabidopsis thaliana HOM05D002746 ORTHO05D003037 1.6e-27 128.6 649 30.0
Carub.0003s0965 Capsella rubella HOM05D002746 ORTHO05D003037 2.6e-27 127.9 620 30.5
AL3G21800 Arabidopsis lyrata HOM05D002746 ORTHO05D003037 7.7e-27 126.3 626 29.2
C03p01970 Brassica napus HOM05D002746 ORTHO05D027081 3.8e-26 124.0 123 65.0
THA.LOC104826901 Tarenaya hassleriana HOM05D002746 ORTHO05D003037 8.0e-24 116.3 634 33.1
QL01p015272 Quercus lobata HOM05D002746 ORTHO05D003037 3.1e-20 104.4 275 32.7
QL08p053342 Quercus lobata HOM05D002746 ORTHO05D003037 7.0e-20 103.2 299 33.8
CiPaw.01G266600 Carya illinoinensis HOM05D002746 ORTHO05D003037 5.9e-19 100.1 277 35.4
CAN.G694.42 Capsicum annuum HOM05D002746 ORTHO05D003037 7.7e-19 99.8 256 35.2
Gorai.010G207300 Gossypium raimondii HOM05D002746 ORTHO05D003037 1.0e-18 99.4 580 26.6
BcaB01g05891 Brassica carinata HOM05D002746 ORTHO05D027081 5.0e-18 97.1 117 55.6
Thhalv10020876m.g Eutrema salsugineum HOM05D002746 ORTHO05D003037 5.0e-18 97.1 273 35.5
CSS0002034 Camellia sinensis var. sinensis HOM05D002746 ORTHO05D003037 1.5e-17 95.5 406 27.8
CANSAT56G3275 Cannabis sativa HOM05D002746 ORTHO05D003037 2.5e-17 94.7 262 33.6
Cpa.g.sc53.153 Carica papaya HOM05D002746 ORTHO05D003037 2.5e-17 94.7 278 32.4
GSVIVG01016210001 Vitis vinifera HOM05D002746 ORTHO05D003037 2.5e-17 94.7 284 32.0
Actinidia18545 Actinidia chinensis HOM05D002746 ORTHO05D003037 3.2e-17 94.4 270 33.7
Dinv36375 Davidia involucrata HOM05D002746 ORTHO05D003037 3.2e-17 94.4 254 33.9
ClCG08G007860 Citrullus lanatus HOM05D002746 ORTHO05D003037 5.5e-17 93.6 286 31.5
TWI63G0026 Tripterygium wilfordii HOM05D002746 ORTHO05D003037 5.5e-17 93.6 244 36.1
BraA01t04253Z Brassica rapa HOM05D002746 ORTHO05D003037 7.2e-17 93.2 280 33.6
Cfa010292 Carpinus fangiana HOM05D002746 ORTHO05D003037 1.2e-16 92.4 261 32.6
Haze_16759 Corylus avellana HOM05D002746 ORTHO05D003037 1.2e-16 92.4 275 34.2
Atru.chr12.881 Acer truncatum HOM05D002746 ORTHO05D003037 1.6e-16 92.0 244 35.2
MELO3C019841.2 Cucumis melo HOM05D002746 ORTHO05D003037 2.1e-16 91.7 264 30.7
PGR142G3471 Punica granatum HOM05D002746 ORTHO05D003037 3.6e-16 90.9 283 32.9
TAR633G0282 Trochodendron aralioides HOM05D002746 ORTHO05D003037 3.6e-16 90.9 242 31.4
TWI38G1635 Tripterygium wilfordii HOM05D002746 ORTHO05D003037 1.0e-15 89.4 253 32.4
A01p41810 Brassica napus HOM05D002746 ORTHO05D003037 1.8e-15 88.6 591 27.7
BolC1t05396H Brassica oleracea HOM05D002746 ORTHO05D003037 2.3e-15 88.2 579 27.5
CiPaw.02G170900 Carya illinoinensis HOM05D002746 ORTHO05D003037 2.3e-15 88.2 278 33.8
TAR636G2586 Trochodendron aralioides HOM05D002746 ORTHO05D003037 2.3e-15 88.2 253 31.6
vmacro10253 Vaccinium macrocarpon HOM05D002746 ORTHO05D003037 4.0e-15 87.4 287 33.1
C03p54020 Brassica napus HOM05D002746 ORTHO05D003037 8.8e-15 86.3 104 55.8
TAR369G0776 Trochodendron aralioides HOM05D002746 ORTHO05D003037 1.2e-14 85.9 253 32.0
Actinidia06732 Actinidia chinensis HOM05D002746 ORTHO05D003037 1.5e-14 85.5 273 32.2
FAN21G0473 Fragaria x ananassa HOM05D002746 ORTHO05D003037 2.0e-14 85.1 308 30.2
Nn6g35239 Nelumbo nucifera HOM05D002746 ORTHO05D003037 2.0e-14 85.1 260 32.3
Rhsim09G0146600 Rhododendron simsii HOM05D002746 ORTHO05D003037 4.4e-14 84.0 155 41.3
FAN16G2248 Fragaria x ananassa HOM05D002746 ORTHO05D003037 5.7e-14 83.6 281 30.2
Nitab4.5_0002692g0020 Nicotiana tabacum HOM05D002746 ORTHO05D003037 9.8e-14 82.8 139 42.4
Gohir.A05G292300 Gossypium hirsutum HOM05D002746 ORTHO05D003037 2.2e-13 81.6 249 31.7
Oeu046646.1 Olea europaea HOM05D002746 ORTHO05D003037 2.2e-13 81.6 247 32.0
CAN.G459.30 Capsicum annuum HOM05D002746 ORTHO05D003037 2.8e-13 81.3 257 32.3
Cc02_g10720 Coffea canephora HOM05D002746 ORTHO05D003037 2.8e-13 81.3 277 29.6
Gohir.D05G293300 Gossypium hirsutum HOM05D002746 ORTHO05D003037 2.8e-13 81.3 258 29.8
vmacro14395 Vaccinium macrocarpon HOM05D002746 ORTHO05D003037 2.8e-13 81.3 262 30.5
CsaV3_2G021060 Cucumis sativus L. HOM05D002746 ORTHO05D003037 4.9e-13 80.5 170 37.1
MD01G1100300 Malus domestica HOM05D002746 ORTHO05D003037 4.9e-13 80.5 619 25.2
Potri.010G229100 Populus trichocarpa HOM05D002746 ORTHO05D003037 4.9e-13 80.5 172 39.0
Sed0007948 Sechium edule HOM05D002746 ORTHO05D003037 6.3e-13 80.1 276 31.2
Cc01_g10360 Coffea canephora HOM05D002746 ORTHO05D003037 8.3e-13 79.7 250 30.0
GSVIVG01031478001 Vitis vinifera HOM05D002746 ORTHO05D003037 8.3e-13 79.7 257 28.8
Gohir.A06G168700 Gossypium hirsutum HOM05D002746 ORTHO05D003037 1.1e-12 79.3 593 25.8
Prupe.6G111900 Prunus persica HOM05D002746 ORTHO05D003037 1.1e-12 79.3 261 29.9
MSTRG.9139 Avicennia marina HOM05D002746 ORTHO05D003037 3.1e-12 77.8 250 32.8
BcaB04g21205 Brassica carinata HOM05D002746 ORTHO05D003037 3.1e-12 77.8 142 44.4
MD07G1167400 Malus domestica HOM05D002746 ORTHO05D003037 3.1e-12 77.8 603 25.9
Sopen11g026100 Solanum pennellii HOM05D002746 ORTHO05D003037 3.1e-12 77.8 243 30.5
Sp3g08710 Schrenkiella parvula HOM05D002746 ORTHO05D003037 4.1e-12 77.4 576 26.0
FAN25G1769 Fragaria x ananassa HOM05D002746 ORTHO05D003037 5.4e-12 77.0 299 28.8
Sabra10G0177700 Salix brachista HOM05D002746 ORTHO05D003037 7.0e-12 76.6 130 43.1
Solyc11g066350.2 Solanum lycopersicum HOM05D002746 ORTHO05D003037 7.0e-12 76.6 243 30.0
FAN11G2794 Fragaria x ananassa HOM05D002746 ORTHO05D003037 9.1e-12 76.3 309 29.8
Prupe.2G206000 Prunus persica HOM05D002746 ORTHO05D003037 9.1e-12 76.3 590 26.6
MBI13_g39327_MAGBIO Magnolia biondii HOM05D002746 ORTHO05D003037 1.2e-11 75.9 249 29.3
Haze_23707 Corylus avellana HOM05D002746 ORTHO05D003037 1.6e-11 75.5 152 37.5
Gorai.009G309800 Gossypium raimondii HOM05D002746 ORTHO05D003037 1.6e-11 75.5 142 40.1
HanXRQChr13g0404481 Helianthus annuus HOM05D002746 ORTHO05D003037 1.6e-11 75.5 267 31.5
PGSC0003DMG400000414 Solanum tuberosum HOM05D002746 ORTHO05D003037 1.6e-11 75.5 243 30.0
Thecc.10G087200 Theobroma cacao HOM05D002746 ORTHO05D003037 2.0e-11 75.1 258 30.6
Nitab4.5_0002285g0050 Nicotiana tabacum HOM05D002746 ORTHO05D003037 3.5e-11 74.3 140 41.4
Solyc11g008090.2 Solanum lycopersicum HOM05D002746 ORTHO05D003037 3.5e-11 74.3 257 30.0
BcaC09g48090 Brassica carinata HOM05D002746 ORTHO05D003037 4.5e-11 73.9 256 31.2
COL.COLO4_09863 Corchorus olitorius HOM05D002746 ORTHO05D003037 4.5e-11 73.9 580 25.0
SalBow6G2132 Salvia bowleyana HOM05D002746 ORTHO05D003037 4.5e-11 73.9 130 43.1
Nn2g13843 Nelumbo nucifera HOM05D002746 ORTHO05D003037 5.9e-11 73.6 253 30.4
Nitab4.5_0000096g0260 Nicotiana tabacum HOM05D002746 ORTHO05D003037 5.9e-11 73.6 266 29.3
Sopen11g003940 Solanum pennellii HOM05D002746 ORTHO05D003037 5.9e-11 73.6 257 30.0
Manes.07G094800 Manihot esculenta HOM05D002746 ORTHO05D003037 7.7e-11 73.2 137 39.4
Rhsim11G0027700 Rhododendron simsii HOM05D002746 ORTHO05D003037 7.7e-11 73.2 249 27.7
ECA233G0311 Erigeron canadensis HOM05D002746 ORTHO05D003037 1.0e-10 72.8 259 28.2
Nitab4.5_0004987g0050 Nicotiana tabacum HOM05D002746 ORTHO05D003037 1.0e-10 72.8 136 39.7
Actinidia34797 Actinidia chinensis HOM05D001960 ORTHO05D004348 1.3e-10 72.4 271 30.3
TWI79G0630 Tripterygium wilfordii HOM05D002746 ORTHO05D003037 1.3e-10 72.4 251 29.5
MD11G1147400 Malus domestica HOM05D002746 ORTHO05D003037 1.7e-10 72.0 256 30.9
Nitab4.5_0000329g0090 Nicotiana tabacum HOM05D002746 ORTHO05D003037 1.7e-10 72.0 243 30.9
Potri.008G032600 Populus trichocarpa HOM05D002746 ORTHO05D003037 1.7e-10 72.0 172 37.2
Sc20g0001570 Simmondsia chinensis HOM05D002746 ORTHO05D003037 1.7e-10 72.0 252 29.4
Actinidia03695 Actinidia chinensis HOM05D002746 ORTHO05D003037 2.3e-10 71.6 251 31.1
Potri.004G216000 Populus trichocarpa HOM05D002746 ORTHO05D003037 2.3e-10 71.6 260 28.5
Thecc.09G350400 Theobroma cacao HOM05D002746 ORTHO05D003037 2.9e-10 71.2 275 28.7
TWI79G0510 Tripterygium wilfordii HOM05D002746 ORTHO05D003037 2.9e-10 71.2 251 29.1
CSS0033737 Camellia sinensis var. sinensis HOM05D002746 ORTHO05D003037 3.8e-10 70.9 284 30.3
Duzib168G1483 Durio zibethinus HOM05D002746 ORTHO05D003037 3.8e-10 70.9 269 29.0
CSS0020443 Camellia sinensis var. sinensis HOM05D006101 ORTHO05D007422 5.0e-10 70.5 256 30.5
CSS0026133 Camellia sinensis var. sinensis HOM05D006101 ORTHO05D007422 5.0e-10 70.5 256 30.5
SGA_v2.0_scaffold2G01341 Striga asiatica HOM05D002746 ORTHO05D003037 5.0e-10 70.5 246 29.3
Migut.F01943 Erythranthe guttata HOM05D002746 ORTHO05D003037 6.6e-10 70.1 133 42.1
MD03G1126800 Malus domestica HOM05D002746 ORTHO05D003037 8.6e-10 69.7 252 29.4
CAN.G546.40 Capsicum annuum HOM05D002746 ORTHO05D003037 1.1e-09 69.3 245 30.6
Gohir.A05G107100 Gossypium hirsutum HOM05D002746 ORTHO05D003037 1.1e-09 69.3 251 29.5
ECA232G1997 Erigeron canadensis HOM05D002746 ORTHO05D003037 1.5e-09 68.9 252 31.0
Gohir.D06G176308 Gossypium hirsutum HOM05D002746 ORTHO05D003037 1.5e-09 68.9 576 26.6
Hma1.2p1_0117F.1_g056370 Hydrangea macrophylla HOM05D002746 ORTHO05D003037 1.9e-09 68.6 282 27.7
SGA_v2.0_scaffold51G18717 Striga asiatica HOM05D002746 ORTHO05D003037 1.9e-09 68.6 129 41.9
Actinidia20430 Actinidia chinensis HOM05D002746 ORTHO05D003037 2.5e-09 68.2 140 40.0
FvH4_3g30760 Fragaria vesca HOM05D002746 ORTHO05D003037 4.3e-09 67.4 297 29.0
Eucgr.B03933 Eucalyptus grandis HOM05D002746 ORTHO05D003037 5.6e-09 67.0 261 29.5
Gorai.009G111300 Gossypium raimondii HOM05D002746 ORTHO05D003037 5.6e-09 67.0 251 29.1
RcHm_v2.0_Chr1g0362201 Rosa chinensis HOM05D002746 ORTHO05D003037 7.2e-09 66.6 252 28.2
MSTRG.8123 Avicennia marina HOM05D002746 ORTHO05D003037 9.5e-09 66.2 274 29.6
Ciclev10028947m.g Citrus clementina HOM05D002746 ORTHO05D003037 9.5e-09 66.2 257 27.2
CDE04G0545 Ceratophyllum demersum HOM05D002746 ORTHO05D003037 1.6e-08 65.5 130 38.5
BcaB04g21203 Brassica carinata HOM05D002746 ORTHO05D003037 2.8e-08 64.7 588 25.9
Dinv29373 Davidia involucrata HOM05D002746 ORTHO05D003037 2.8e-08 64.7 140 38.6
Lsat_1_v5_gn_9_71621 Lactuca sativa HOM05D002746 ORTHO05D003037 2.8e-08 64.7 176 35.2
Migut.N02561 Erythranthe guttata HOM05D002746 ORTHO05D003037 3.6e-08 64.3 254 30.7
A10p31810 Brassica napus HOM05D010985 ORTHO05D006481 6.1e-08 63.5 61 70.5
Dinv31245 Davidia involucrata HOM05D002746 ORTHO05D003037 6.1e-08 63.5 169 31.4
Duzib170G0446 Durio zibethinus HOM05D002746 ORTHO05D003037 6.1e-08 63.5 266 26.7
Migut.F01699 Erythranthe guttata HOM05D002746 ORTHO05D003037 6.1e-08 63.5 247 30.0
Oeu007312.2 Olea europaea HOM05D002746 ORTHO05D003037 6.1e-08 63.5 252 29.0
PGR119G0855 Punica granatum HOM05D002746 ORTHO05D003037 6.1e-08 63.5 252 25.8
RcHm_v2.0_Chr5g0056951 Rosa chinensis HOM05D002746 ORTHO05D003037 6.1e-08 63.5 291 29.6
Atru.chr3.3527 Acer truncatum HOM05D002746 ORTHO05D003037 8.0e-08 63.2 259 27.8
DCAR_019068 Daucus carota HOM05D002746 ORTHO05D003037 1.0e-07 62.8 590 23.2
Lj2A1009T38 Lonicera japonica HOM05D002746 ORTHO05D003037 1.0e-07 62.8 259 28.2
Lsat_1_v5_gn_6_44580 Lactuca sativa HOM05D002746 ORTHO05D003037 1.8e-07 62.0 261 26.1
TWI75G0416 Tripterygium wilfordii HOM05D002746 ORTHO05D003037 1.8e-07 62.0 258 26.4
DCAR_006399 Daucus carota HOM05D002746 ORTHO05D003037 3.0e-07 61.2 150 32.7
ECA233G2466 Erigeron canadensis HOM05D000013 ORTHO05D000011 3.0e-07 61.2 244 27.0
FAN01G0726 Fragaria x ananassa HOM05D002746 ORTHO05D003037 3.0e-07 61.2 140 35.7
FAN03G0996 Fragaria x ananassa HOM05D002746 ORTHO05D003037 3.0e-07 61.2 139 36.7
FAN06G2396 Fragaria x ananassa HOM05D002746 ORTHO05D003037 3.0e-07 61.2 253 28.1
SalBow3G3794 Salvia bowleyana HOM05D002746 ORTHO05D003037 3.0e-07 61.2 175 34.9
FAN10G3770 Fragaria x ananassa HOM05D002746 ORTHO05D003037 4.0e-07 60.8 139 36.7
Aqoxy1G01110 Aquilegia oxysepala HOM05D002746 ORTHO05D003037 5.2e-07 60.5 136 34.6
FAN10G1392 Fragaria x ananassa HOM05D002746 ORTHO05D003037 5.2e-07 60.5 155 34.8
Hund01439 Selenicereus undatus HOM05D002746 ORTHO05D003037 5.2e-07 60.5 245 26.1
MSTRG.17763 Avicennia marina HOM05D002746 ORTHO05D003037 8.9e-07 59.7 253 28.1
FvH4_7g18390 Fragaria vesca HOM05D002746 ORTHO05D003037 8.9e-07 59.7 253 27.7
FAN06G0235 Fragaria x ananassa HOM05D002746 ORTHO05D003037 8.9e-07 59.7 253 27.7
Gohir.D05G107200 Gossypium hirsutum HOM05D002746 ORTHO05D003037 1.2e-06 59.3 158 33.5
Oeu040984.1 Olea europaea HOM05D002746 ORTHO05D003037 1.2e-06 59.3 66 48.5
Sabra04G0146600 Salix brachista HOM05D002746 ORTHO05D003037 2.0e-06 58.5 157 33.8
PGSC0003DMG402031076 Solanum tuberosum HOM05D002746 ORTHO05D003037 4.4e-06 57.4 110 39.1
MSTRG.12339 Avicennia marina HOM05D002746 ORTHO05D003037 5.7e-06 57.0 252 26.6
A02p35760 Brassica napus HOM05D002746 ORTHO05D003037 9.8e-06 56.2 35 80.0
HanXRQChr08g0218461 Helianthus annuus HOM05D002746 ORTHO05D003037 9.8e-06 56.2 149 33.6


User provided reference genes

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