Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g32123 Brassica carinata HOM05D011214 ORTHO05D007661 9.3e-207 723.4 388 100.0
BcaC06g32122 Brassica carinata HOM05D011214 ORTHO05D007661 1.9e-183 646.0 389 89.5
C09p72660 Brassica napus HOM05D011214 ORTHO05D007661 3.1e-170 602.1 399 83.2
BolC9t60006H Brassica oleracea HOM05D011214 ORTHO05D007661 4.5e-169 598.2 399 83.0
A10p31950 Brassica napus HOM05D011214 ORTHO05D007661 3.3e-164 582.0 404 80.7
BraA10t45239Z Brassica rapa HOM05D011214 ORTHO05D007661 2.8e-163 578.9 404 80.2
Sp6g38560 Schrenkiella parvula HOM05D011214 ORTHO05D007661 1.0e-157 560.5 414 75.8
Thhalv10015710m.g Eutrema salsugineum HOM05D011214 ORTHO05D007661 7.5e-156 554.3 414 75.4
CARHR209070 Cardamine hirsuta HOM05D011214 ORTHO05D007661 3.2e-151 538.9 411 73.7
AT5G04190 Arabidopsis thaliana HOM05D011214 ORTHO05D007661 5.2e-149 531.6 407 72.7
BcaB05g21770 Brassica carinata HOM05D011214 ORTHO05D007661 9.1e-146 520.8 405 72.3
Carub.0006s0314 Capsella rubella HOM05D011214 ORTHO05D007661 1.5e-143 513.5 408 71.6
C02p01830 Brassica napus HOM05D011214 ORTHO05D007661 4.9e-139 498.4 387 71.1
BolC2t06140H Brassica oleracea HOM05D011214 ORTHO05D007661 3.3e-135 485.7 402 68.4
AL6G13810 Arabidopsis lyrata HOM05D011214 ORTHO05D007661 6.1e-134 481.5 402 69.7
BcaC03g12952 Brassica carinata HOM05D011214 ORTHO05D007661 1.2e-129 467.2 402 66.9
BraA02t04803Z Brassica rapa HOM05D011214 ORTHO05D007661 1.9e-114 416.8 415 61.0
THA.LOC104816415 Tarenaya hassleriana HOM05D011214 ORTHO05D007661 3.8e-83 312.8 424 55.2
TWI77G0394 Tripterygium wilfordii HOM05D007561 ORTHO05D007661 1.6e-28 131.3 448 34.8
Peaxi162Scf00575g00079 Petunia axillaris HOM05D007561 ORTHO05D007661 4.5e-28 129.8 382 36.6
Sopen10g031840 Solanum pennellii HOM05D007561 ORTHO05D007661 2.5e-26 124.0 454 32.4
TWI74G0078 Tripterygium wilfordii HOM05D007561 ORTHO05D007661 3.3e-26 123.6 456 33.1
Manes.04G066400 Manihot esculenta HOM05D007561 ORTHO05D007661 1.6e-25 121.3 492 31.9
Nitab4.5_0000613g0170 Nicotiana tabacum HOM05D007561 ORTHO05D007661 1.6e-25 121.3 467 32.3
Nitab4.5_0000811g0050 Nicotiana tabacum HOM05D007561 ORTHO05D007661 2.1e-25 120.9 446 34.1
PGSC0003DMG400028120 Solanum tuberosum HOM05D007561 ORTHO05D007661 3.6e-25 120.2 456 32.0
Solyc10g081340.1 Solanum lycopersicum HOM05D007561 ORTHO05D007661 8.0e-25 119.0 456 31.6
TAR561G0001 Trochodendron aralioides HOM05D007561 ORTHO05D007661 1.0e-24 118.6 519 29.5
SalBow6G6384 Salvia bowleyana HOM05D007561 ORTHO05D007661 3.0e-24 117.1 406 34.7
Cpa.g.sc33.185 Carica papaya HOM05D007561 ORTHO05D007661 5.2e-24 116.3 463 31.3
Dinv37052 Davidia involucrata HOM05D007561 ORTHO05D007661 6.8e-24 115.9 460 30.4
Haze_20355 Corylus avellana HOM05D007561 ORTHO05D007661 1.5e-23 114.8 385 33.5
Lj2A414T29 Lonicera japonica HOM05D007561 ORTHO05D007661 1.5e-23 114.8 431 31.3
SalBow6G1989 Salvia bowleyana HOM05D007561 ORTHO05D007661 4.4e-23 113.2 406 34.7
Gohir.A13G114700 Gossypium hirsutum HOM05D007561 ORTHO05D007661 9.8e-23 112.1 445 31.5
Cfa019892 Carpinus fangiana HOM05D007561 ORTHO05D007661 1.3e-22 111.7 350 33.4
SGA_v2.0_scaffold66G22349 Striga asiatica HOM05D007561 ORTHO05D007661 1.3e-22 111.7 367 33.8
CAN.G128.129 Capsicum annuum HOM05D007561 ORTHO05D007661 1.7e-22 111.3 465 30.3
GSVIVG01029894001 Vitis vinifera HOM05D007561 ORTHO05D007661 2.2e-22 110.9 327 34.3
Potri.007G074056 Populus trichocarpa HOM05D007561 ORTHO05D007661 1.1e-21 108.6 497 32.2
Ciclev10013885m.g Citrus clementina HOM05D007561 ORTHO05D007661 3.2e-21 107.1 510 30.0
Medtr7g088200 Medicago truncatula HOM05D007561 ORTHO05D007661 3.2e-21 107.1 431 31.3
Potri.005G090000 Populus trichocarpa HOM05D007561 ORTHO05D007661 7.0e-21 105.9 470 29.8
Gorai.013G132100 Gossypium raimondii HOM05D007561 ORTHO05D007661 9.2e-21 105.5 408 31.1
CiPaw.09G161100 Carya illinoinensis HOM05D007561 ORTHO05D007661 1.6e-20 104.8 519 29.5
Gohir.D13G117500 Gossypium hirsutum HOM05D007561 ORTHO05D007661 3.5e-20 103.6 408 31.6
Phvul.001G109100 Phaseolus vulgaris HOM05D007561 ORTHO05D007661 3.5e-20 103.6 437 30.0
VMungo1383G3023 Vigna mungo HOM05D007561 ORTHO05D007661 4.6e-20 103.2 440 31.8
PGR042G3351 Punica granatum HOM05D007561 ORTHO05D007661 1.3e-19 101.7 467 30.2
Thecc.05G190500 Theobroma cacao HOM05D007561 ORTHO05D007661 1.3e-19 101.7 417 30.7
PSO732G0159 Papaver somniferum HOM05D007561 ORTHO05D007661 1.7e-19 101.3 494 28.1
Gorai.012G026500 Gossypium raimondii HOM05D007561 ORTHO05D007661 2.9e-19 100.5 397 31.0
Lalb_Chr22g0358291 Lupinus albus HOM05D007561 ORTHO05D007661 6.6e-19 99.4 478 29.3
Duzib177G0099 Durio zibethinus HOM05D007561 ORTHO05D007661 9.5e-18 95.5 443 30.7
ClCG10G016860 Citrullus lanatus HOM05D007561 ORTHO05D007661 1.2e-17 95.1 367 31.9
DCAR_009109 Daucus carota HOM05D007561 ORTHO05D007661 1.2e-17 95.1 390 32.3
Gohir.A05G393000 Gossypium hirsutum HOM05D007561 ORTHO05D007661 2.8e-17 94.0 335 31.9
MELO3C009692.2 Cucumis melo HOM05D007561 ORTHO05D007661 3.6e-17 93.6 361 31.9
CsaV3_3G039500 Cucumis sativus L. HOM05D007561 ORTHO05D007661 6.1e-17 92.8 375 31.5
Gohir.D04G022850 Gossypium hirsutum HOM05D007561 ORTHO05D007661 6.1e-17 92.8 335 31.6
PSO675G2416 Papaver somniferum HOM05D007561 ORTHO05D007661 6.1e-17 92.8 505 28.1
Glyma.19G123300 Glycine max HOM05D007561 ORTHO05D007661 1.0e-16 92.0 447 29.1
Atru.chr8.931 Acer truncatum HOM05D007561 ORTHO05D007661 1.4e-16 91.7 490 29.0
Oeu020265.1 Olea europaea HOM05D007561 ORTHO05D007661 1.4e-16 91.7 485 28.7
Ca_08339_v3 Cicer arietinum L. HOM05D007561 ORTHO05D007661 1.8e-16 91.3 435 31.3
Lj1g0025432 Lotus japonicus HOM05D007561 ORTHO05D007661 8.9e-16 89.0 408 31.6
Sabra05G0074100 Salix brachista HOM05D007561 ORTHO05D007661 8.9e-16 89.0 485 27.8
FAN17G1891 Fragaria x ananassa HOM05D007561 ORTHO05D007661 1.2e-15 88.6 547 28.3
Eucgr.A02170 Eucalyptus grandis HOM05D007561 ORTHO05D007661 1.5e-15 88.2 468 29.5
AUR62018475 Chenopodium quinoa HOM05D007561 ORTHO05D007661 4.4e-15 86.7 420 30.0
RhsimUnG0021900 Rhododendron simsii HOM05D007561 ORTHO05D007661 4.4e-15 86.7 434 29.3
Psat3g083040 Pisum sativum HOM05D007561 ORTHO05D007661 5.8e-15 86.3 465 29.2
FAN12G2197 Fragaria x ananassa HOM05D007561 ORTHO05D007661 7.5e-15 85.9 523 28.1
Migut.J01597 Erythranthe guttata HOM05D007561 ORTHO05D007661 9.8e-15 85.5 452 30.3
QL02p091854 Quercus lobata HOM05D007561 ORTHO05D007661 9.8e-15 85.5 424 29.5
Sabra07G0062300 Salix brachista HOM05D007561 ORTHO05D007661 9.8e-15 85.5 404 31.9
HPP92_021156 Vanilla planifolia HOM05D007561 ORTHO05D007661 1.3e-14 85.1 421 30.2
AUR62020949 Chenopodium quinoa HOM05D007561 ORTHO05D007661 2.2e-14 84.3 486 27.8
MSTRG.6258 Avicennia marina HOM05D007561 ORTHO05D007661 2.9e-14 84.0 462 27.9
FvH4_4g10470 Fragaria vesca HOM05D007561 ORTHO05D007661 2.9e-14 84.0 548 27.6
Aqoxy2G00670 Aquilegia oxysepala HOM05D007561 ORTHO05D007661 3.7e-14 83.6 483 28.0
FAN22G1656 Fragaria x ananassa HOM05D007561 ORTHO05D007661 3.7e-14 83.6 549 27.5
Sed0023829 Sechium edule HOM05D007561 ORTHO05D007661 3.7e-14 83.6 479 28.2
RcHm_v2.0_Chr3g0495011 Rosa chinensis HOM05D007561 ORTHO05D007661 8.3e-14 82.4 544 28.5
Sed0024594 Sechium edule HOM05D007561 ORTHO05D007661 8.3e-14 82.4 455 29.7
FAN12G0994 Fragaria x ananassa HOM05D007561 ORTHO05D007661 1.4e-13 81.6 548 27.0
Ah.04g149900 Amaranthus hybridus HOM05D007561 ORTHO05D007661 1.9e-13 81.3 402 30.6
FAN07G2764 Fragaria x ananassa HOM05D007561 ORTHO05D007661 1.2e-12 78.6 521 27.6
PGR142G0684 Punica granatum HOM05D007561 ORTHO05D007661 2.7e-12 77.4 157 42.7
SGA_v2.0_scaffold69G23211 Striga asiatica HOM05D007561 ORTHO05D007661 1.0e-11 75.5 393 28.8
Glyma.03G118900 Glycine max HOM05D007561 ORTHO05D007661 1.3e-11 75.1 392 27.8
MSTRG.19744 Avicennia marina HOM05D007561 ORTHO05D007661 1.7e-11 74.7 424 29.0
CANSAT78G1013 Cannabis sativa HOM05D007561 ORTHO05D007661 2.3e-11 74.3 480 27.5
Actinidia18379 Actinidia chinensis HOM05D007561 ORTHO05D007661 1.5e-10 71.6 476 26.7
Sc13g0000670 Simmondsia chinensis HOM05D007561 ORTHO05D007661 1.2e-09 68.6 377 30.0
SGA_v2.0_scaffold7G04069 Striga asiatica HOM05D002654 ORTHO05D002430 1.6e-09 68.2 377 27.6
PGR042G3883 Punica granatum HOM05D007561 ORTHO05D007661 2.8e-09 67.4 399 28.8
Hma1.2p1_1686F.1_g297500 Hydrangea macrophylla HOM05D007561 ORTHO05D007661 3.1e-08 63.9 266 29.7
DCAR_016891 Daucus carota HOM05D007561 ORTHO05D007661 5.2e-08 63.2 311 28.3
Manes.06G093600 Manihot esculenta HOM05D002654 ORTHO05D002430 6.8e-08 62.8 360 29.2
Sc04g0008200 Simmondsia chinensis HOM05D002654 ORTHO05D002430 6.8e-08 62.8 396 27.3
Migut.K00204 Erythranthe guttata HOM05D007561 ORTHO05D007661 8.9e-08 62.4 372 30.9
PGSC0003DMG400031263 Solanum tuberosum HOM05D002654 ORTHO05D002430 1.5e-07 61.6 405 25.4
ATR0564G399 Amborella trichopoda HOM05D002654 ORTHO05D002430 2.0e-07 61.2 429 25.9
CAN.G58.27 Capsicum annuum HOM05D002654 ORTHO05D002430 2.6e-07 60.8 398 27.4
PSO339G6289 Papaver somniferum HOM05D007561 ORTHO05D007661 2.6e-07 60.8 482 25.9
Lsat_1_v5_gn_8_53121 Lactuca sativa HOM05D002654 ORTHO05D002430 4.4e-07 60.1 375 26.7
MD12G1110900 Malus domestica HOM05D007561 ORTHO05D007661 4.4e-07 60.1 499 25.3
PSO384G3070 Papaver somniferum HOM05D007561 ORTHO05D007661 4.4e-07 60.1 525 25.7
Potri.015G062600 Populus trichocarpa HOM05D002654 ORTHO05D002430 7.5e-07 59.3 366 27.6
HanXRQChr12g0380721 Helianthus annuus HOM05D002654 ORTHO05D002430 1.3e-06 58.5 375 25.6
Sopen05g003360 Solanum pennellii HOM05D002654 ORTHO05D002430 2.9e-06 57.4 410 25.4
ECA234G4854 Erigeron canadensis HOM05D000087 ORTHO05D000439 4.9e-06 56.6 378 28.0
HanXRQChr12g0362591 Helianthus annuus HOM05D002654 ORTHO05D002430 6.4e-06 56.2 385 26.8
Sp1g12630 Schrenkiella parvula HOM05D002654 ORTHO05D002430 8.3e-06 55.8 343 27.1


User provided reference genes

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