Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g32105 Brassica carinata HOM05D002265 ORTHO05D002400 0.0e+00 1583.5 875 100.0
BolC9t60019H Brassica oleracea HOM05D002265 ORTHO05D002400 0.0e+00 1180.2 935 75.1
A10p32110 Brassica napus HOM05D002265 ORTHO05D002400 0.0e+00 1166.4 982 74.0
BraA10t45254Z Brassica rapa HOM05D002265 ORTHO05D002400 0.0e+00 1162.1 964 74.8
C09p72830 Brassica napus HOM05D002265 ORTHO05D002400 0.0e+00 1148.3 948 73.0
Sp6g38740 Schrenkiella parvula HOM05D002265 ORTHO05D002400 4.1e-279 964.9 987 62.6
AL6G13610 Arabidopsis lyrata HOM05D002265 ORTHO05D002400 4.4e-273 944.9 925 64.4
Thhalv10012432m.g Eutrema salsugineum HOM05D002265 ORTHO05D002400 1.6e-270 936.4 965 62.7
AT5G04020 Arabidopsis thaliana HOM05D002265 ORTHO05D002400 7.1e-255 884.4 962 60.3
Carub.0006s0295 Capsella rubella HOM05D002265 ORTHO05D002400 5.8e-241 838.2 981 57.8
CARHR209260 Cardamine hirsuta HOM05D002265 ORTHO05D002400 2.2e-232 809.7 1055 54.6
Aa31LG1G21310 Aethionema arabicum HOM05D002265 ORTHO05D002400 6.6e-176 622.1 967 49.8
THA.LOC104823216 Tarenaya hassleriana HOM05D002265 ORTHO05D002400 1.4e-98 365.2 1038 36.5
TPR.G32730 Trifolium pratense HOM05D002265 ORTHO05D002400 1.9e-37 162.2 557 29.8
Medtr7g090500 Medicago truncatula HOM05D002265 ORTHO05D002400 5.4e-37 160.6 845 27.1
CANSAT80G1944 Cannabis sativa HOM05D002265 ORTHO05D002400 7.3e-34 150.2 589 27.7
Psat3g076400 Pisum sativum HOM05D002265 ORTHO05D002400 4.7e-33 147.5 934 26.1
Lj1g0002630 Lotus japonicus HOM05D002265 ORTHO05D002400 3.8e-30 137.9 1120 25.4
GSVIVG01033565001 Vitis vinifera HOM05D002265 ORTHO05D000863 2.4e-29 135.2 522 28.7
Rhsim03G0033200 Rhododendron simsii HOM05D002265 ORTHO05D002400 1.2e-28 132.9 866 24.9
Glyma.03G131000 Glycine max HOM05D002265 ORTHO05D002400 1.3e-27 129.4 981 24.1
Actinidia39181 Actinidia chinensis HOM05D002265 ORTHO05D002400 2.3e-27 128.6 631 26.3
Lsat_1_v5_gn_5_159761 Lactuca sativa HOM05D002265 ORTHO05D002400 3.9e-27 127.9 432 30.1
arahy.Tifrunner.gnm1.ann1.HMQ04Z Arachis hypogaea HOM05D005050 ORTHO05D006198 1.5e-26 125.9 664 26.5
Dinv18477 Davidia involucrata HOM05D002265 ORTHO05D002400 1.3e-25 122.9 720 25.8
Lj2A392T42 Lonicera japonica HOM05D002265 ORTHO05D002400 2.1e-25 122.1 574 26.8
Rhsim03G0032700 Rhododendron simsii HOM05D002265 ORTHO05D002400 4.8e-25 120.9 579 26.4
Oeu033032.2 Olea europaea HOM05D002265 ORTHO05D002400 1.8e-24 119.0 557 27.5
vmacro21944 Vaccinium macrocarpon HOM05D002265 ORTHO05D002400 2.4e-24 118.6 1051 23.7
Sopen10g030410 Solanum pennellii HOM05D002265 ORTHO05D002400 3.1e-24 118.2 569 26.2
QL07p004364 Quercus lobata HOM05D002265 ORTHO05D002400 5.3e-24 117.5 761 27.1
Migut.J01689 Erythranthe guttata HOM05D002265 ORTHO05D002400 1.2e-23 116.3 488 24.0
SGA_v2.0_scaffold105G30338 Striga asiatica HOM05D002265 ORTHO05D002400 1.2e-23 116.3 525 27.4
Lalb_Chr25g0287001 Lupinus albus HOM05D002265 ORTHO05D002400 1.5e-23 115.9 848 25.0
Oeu017892.1 Olea europaea HOM05D002265 ORTHO05D002400 3.4e-23 114.8 484 27.7
Solyc10g079790.1 Solanum lycopersicum HOM05D002265 ORTHO05D002400 7.6e-23 113.6 571 25.9
Glyma.19G133000 Glycine max HOM05D002265 ORTHO05D002400 1.3e-22 112.8 1160 23.7
TWI53G1000 Tripterygium wilfordii HOM05D002265 ORTHO05D002400 4.9e-22 110.9 708 26.6
Cfa016736 Carpinus fangiana HOM05D002265 ORTHO05D002400 6.4e-22 110.5 1114 24.7
Manes.08G055800 Manihot esculenta HOM05D002265 ORTHO05D002400 1.1e-21 109.8 353 30.6
Phvul.001G127000 Phaseolus vulgaris HOM05D002265 ORTHO05D002400 1.1e-21 109.8 1154 23.7
Cpa.g.sc5.187 Carica papaya HOM05D002265 ORTHO05D002400 1.4e-21 109.4 200 37.0
Atru.chr1.1261 Acer truncatum HOM05D002265 ORTHO05D002400 2.4e-21 108.6 104 55.8
Duzib106G0983 Durio zibethinus HOM05D002265 ORTHO05D002400 2.4e-21 108.6 614 26.5
arahy.Tifrunner.gnm1.ann1.HURS1T Arachis hypogaea HOM05D002265 ORTHO05D002400 4.2e-21 107.8 1112 24.4
CsaV3_3G040840 Cucumis sativus L. HOM05D002265 ORTHO05D002400 4.2e-21 107.8 673 24.5
Potri.006G043900 Populus trichocarpa HOM05D002265 ORTHO05D002400 4.2e-21 107.8 373 28.7
CSS0016894 Camellia sinensis var. sinensis HOM05D002265 ORTHO05D002400 5.4e-21 107.5 942 23.9
Sabra16G0043900 Salix brachista HOM05D002265 ORTHO05D002400 5.4e-21 107.5 778 24.6
Ciclev10004157m.g Citrus clementina HOM05D002265 ORTHO05D002400 1.6e-20 105.9 259 33.6
Nitab4.5_0005031g0040 Nicotiana tabacum HOM05D002265 ORTHO05D002400 2.1e-20 105.5 592 26.0
Ca_08415_v3 Cicer arietinum L. HOM05D002265 ORTHO05D002400 2.7e-20 105.1 1170 23.5
Gohir.A09G119500 Gossypium hirsutum HOM05D002265 ORTHO05D002400 2.7e-20 105.1 337 31.8
Thecc.05G143100 Theobroma cacao HOM05D002265 ORTHO05D002400 6.0e-20 104.0 349 32.4
ECA248G3739 Erigeron canadensis HOM05D002265 ORTHO05D002400 7.9e-20 103.6 851 24.1
Gorai.006G134000 Gossypium raimondii HOM05D002265 ORTHO05D002400 3.0e-19 101.7 379 30.9
Potri.016G041100 Populus trichocarpa HOM05D002265 ORTHO05D002400 3.0e-19 101.7 353 28.9
Prupe.7G047600 Prunus persica HOM05D002265 ORTHO05D002400 3.0e-19 101.7 235 31.5
ClCG10G015580 Citrullus lanatus HOM05D002265 ORTHO05D002400 5.1e-19 100.9 998 23.1
MSTRG.19828 Avicennia marina HOM05D002265 ORTHO05D002400 6.7e-19 100.5 109 52.3
unitig_26.g9060 Utricularia gibba HOM05D002265 ORTHO05D002400 8.7e-19 100.1 500 25.4
CiPaw.09G043600 Carya illinoinensis HOM05D002265 ORTHO05D002400 9.6e-18 96.7 103 49.5
AUR62030383 Chenopodium quinoa HOM05D002265 ORTHO05D002400 1.3e-17 96.3 549 25.1
PGR142G1568 Punica granatum HOM05D002265 ORTHO05D002400 1.3e-17 96.3 617 23.8
EL10Ac3g07179 Beta vulgaris HOM05D002265 ORTHO05D002400 1.6e-17 95.9 451 25.1
Peaxi162Scf00130g01217 Petunia axillaris HOM05D002265 ORTHO05D002400 1.6e-17 95.9 114 48.2
CiPaw.10G037400 Carya illinoinensis HOM05D002265 ORTHO05D002400 2.1e-17 95.5 113 50.4
Haze_19766 Corylus avellana HOM05D002265 ORTHO05D002400 2.1e-17 95.5 133 42.9
Haze_19767 Corylus avellana HOM05D002265 ORTHO05D002400 2.1e-17 95.5 175 39.4
Nitab4.5_0004127g0010 Nicotiana tabacum HOM05D002265 ORTHO05D002400 4.8e-17 94.4 130 45.4
Sed0013020 Sechium edule HOM05D002265 ORTHO05D002400 6.2e-17 94.0 133 42.9
MD14G1082900 Malus domestica HOM05D002265 ORTHO05D002400 8.1e-17 93.6 130 43.8
CAN.G1237.28 Capsicum annuum HOM05D002265 ORTHO05D002400 1.1e-16 93.2 261 35.2
Cc06_g18510 Coffea canephora HOM05D002265 ORTHO05D002400 1.4e-16 92.8 634 25.2
Nitab4.5_0001618g0010 Nicotiana tabacum HOM05D002265 ORTHO05D002400 1.4e-16 92.8 249 32.9
Sopen04g008940 Solanum pennellii HOM05D002265 ORTHO05D002400 2.4e-16 92.0 164 39.0
Atru.chr1.1260 Acer truncatum HOM05D002265 ORTHO05D002400 3.1e-16 91.7 255 32.5
Actinidia09286 Actinidia chinensis HOM05D002265 ORTHO05D002400 3.1e-16 91.7 140 41.4
Eucgr.K01584 Eucalyptus grandis HOM05D002265 ORTHO05D002400 3.1e-16 91.7 113 48.7
DCAR_013625 Daucus carota HOM05D002265 ORTHO05D002400 4.0e-16 91.3 117 45.3
Sc19g0008450 Simmondsia chinensis HOM05D002265 ORTHO05D002400 4.0e-16 91.3 944 24.5
Sabra16G0047300 Salix brachista HOM05D002265 ORTHO05D002400 6.9e-16 90.5 477 23.9
MELO3C009820.2 Cucumis melo HOM05D002265 ORTHO05D002400 1.5e-15 89.4 1038 22.7
MD12G1087500 Malus domestica HOM05D002265 ORTHO05D002400 2.0e-15 89.0 155 41.3
Hund19117 Selenicereus undatus HOM05D002265 ORTHO05D002400 2.0e-15 89.0 498 25.3
AUR62026152 Chenopodium quinoa HOM05D002265 ORTHO05D002400 2.6e-15 88.6 499 24.4
FAN02G1400 Fragaria x ananassa HOM05D002265 ORTHO05D002400 3.4e-15 88.2 173 35.8
FAN14G5338 Fragaria x ananassa HOM05D002265 ORTHO05D002400 5.8e-15 87.4 184 34.2
COL.COLO4_34259 Corchorus olitorius HOM05D002265 ORTHO05D002400 1.3e-14 86.3 1227 22.9
Peaxi162Scf00648g00313 Petunia axillaris HOM05D002265 ORTHO05D002400 1.7e-14 85.9 372 26.6
HanXRQChr01g0008261 Helianthus annuus HOM05D002265 ORTHO05D002400 2.2e-14 85.5 855 23.5
HanXRQChr17g0545901 Helianthus annuus HOM05D002265 ORTHO05D002400 2.2e-14 85.5 888 22.0
FvH4_6g24980 Fragaria vesca HOM05D002265 ORTHO05D002400 3.8e-14 84.7 184 33.7
FAN09G1166 Fragaria x ananassa HOM05D002265 ORTHO05D002400 3.8e-14 84.7 188 32.4
CAN.G199.45 Capsicum annuum HOM05D002265 ORTHO05D002400 6.4e-14 84.0 156 38.5
Sabra06G0030200 Salix brachista HOM05D002265 ORTHO05D002400 1.4e-13 82.8 255 28.6
Lsat_1_v5_gn_8_82941 Lactuca sativa HOM05D002265 ORTHO05D002400 4.2e-13 81.3 570 23.7
Oeu017894.1 Olea europaea HOM05D002265 ORTHO05D002400 5.5e-13 80.9 140 38.6
Ah.04g151160 Amaranthus hybridus HOM05D000087 ORTHO05D006949 9.3e-13 80.1 487 24.4
Manes.09G009350 Manihot esculenta HOM05D002265 ORTHO05D002400 1.6e-12 79.3 290 27.9
RcHm_v2.0_Chr2g0124711 Rosa chinensis HOM05D002265 ORTHO05D002400 1.6e-12 79.3 244 27.9
DCAR_003238 Daucus carota HOM05D002265 ORTHO05D002400 1.8e-11 75.9 139 35.3
Duzib128G0504 Durio zibethinus HOM05D002265 ORTHO05D002400 8.7e-11 73.6 949 23.4
CAN.G1656.12 Capsicum annuum HOM05D002265 ORTHO05D002400 1.1e-10 73.2 361 26.9
Oeu017900.1 Olea europaea HOM05D002265 ORTHO05D002400 2.5e-10 72.0 99 38.4
TAR369G0190 Trochodendron aralioides HOM05D002265 ORTHO05D002400 3.3e-10 71.6 136 39.0
Nitab4.5_0004127g0020 Nicotiana tabacum HOM05D002265 ORTHO05D002400 5.6e-10 70.9 95 36.8
Gohir.D09G115700 Gossypium hirsutum HOM05D002265 ORTHO05D002400 1.3e-09 69.7 927 23.7
HanXRQChr04g0124931 Helianthus annuus HOM05D002265 ORTHO05D002400 1.6e-09 69.3 220 29.1
Lj1C1244T7 Lonicera japonica HOM05D002265 ORTHO05D002400 2.8e-09 68.6 71 47.9
Thecc.10G006100 Theobroma cacao HOM05D002265 ORTHO05D002400 6.2e-09 67.4 49 61.2
FAN05G2014 Fragaria x ananassa HOM05D002265 ORTHO05D002400 8.1e-09 67.0 257 24.9
TPR.G7212 Trifolium pratense HOM05D002265 ORTHO05D002400 8.1e-09 67.0 140 37.1
unitig_749.g14150 Utricularia gibba HOM05D002265 ORTHO05D002400 1.4e-08 66.2 244 29.1
COL.COLO4_25831 Corchorus olitorius HOM05D002265 ORTHO05D002400 1.8e-08 65.9 49 59.2
arahy.Tifrunner.gnm1.ann1.Z3R2Q1 Arachis hypogaea HOM05D002265 ORTHO05D002400 2.4e-08 65.5 97 42.3
Duzib106G0709 Durio zibethinus HOM05D002265 ORTHO05D002400 3.1e-08 65.1 49 57.1
Zm00001eb286890 Zea mays HOM05D002265 ORTHO05D002400 4.0e-08 64.7 48 56.2
Aqoxy2G00301 Aquilegia oxysepala HOM05D002265 ORTHO05D002400 6.9e-08 63.9 59 49.2
Rhsim07G0062800 Rhododendron simsii HOM05D002265 ORTHO05D002400 6.9e-08 63.9 61 54.1
Lj9A646G48 Lonicera japonica HOM05D002265 ORTHO05D002400 9.0e-08 63.5 59 49.2
Lj3g0022374 Lotus japonicus HOM05D002265 ORTHO05D002400 9.0e-08 63.5 48 62.5
TPR.G3834 Trifolium pratense HOM05D002265 ORTHO05D002400 9.0e-08 63.5 56 53.6
ATR0217G005 Amborella trichopoda HOM05D002265 ORTHO05D002400 1.2e-07 63.2 260 25.8
Manes.11G002800 Manihot esculenta HOM05D002265 ORTHO05D002400 1.2e-07 63.2 106 38.7
Gohir.A05G333200 Gossypium hirsutum HOM05D002265 ORTHO05D002400 1.5e-07 62.8 48 62.5
Ca_14307_v3 Cicer arietinum L. HOM05D002265 ORTHO05D002400 2.0e-07 62.4 58 53.4
Gohir.D04G071300 Gossypium hirsutum HOM05D002265 ORTHO05D002400 2.0e-07 62.4 48 62.5
Gorai.012G080300 Gossypium raimondii HOM05D002265 ORTHO05D002400 2.0e-07 62.4 48 62.5
Phvul.005G031900 Phaseolus vulgaris HOM05D002265 ORTHO05D002400 2.0e-07 62.4 181 33.1
Atru.chr11.2494 Acer truncatum HOM05D002265 ORTHO05D002400 2.6e-07 62.0 49 57.1
CsaV3_5G024700 Cucumis sativus L. HOM05D002265 ORTHO05D002400 2.6e-07 62.0 243 27.2
Actinidia19444 Actinidia chinensis HOM05D002265 ORTHO05D002400 3.4e-07 61.6 49 53.1
EL10Ac2g02851 Beta vulgaris HOM05D002265 ORTHO05D002400 3.4e-07 61.6 306 25.5
Lsat_1_v5_gn_1_97840 Lactuca sativa HOM05D002265 ORTHO05D002400 3.4e-07 61.6 57 50.9
Sabra03G0148900 Salix brachista HOM05D002265 ORTHO05D002400 3.4e-07 61.6 48 58.3
AUR62030384 Chenopodium quinoa HOM05D002265 ORTHO05D002400 4.5e-07 61.2 142 31.0
Eucgr.G03256 Eucalyptus grandis HOM05D002265 ORTHO05D002400 4.5e-07 61.2 48 56.2
Oeu027111.1 Olea europaea HOM05D002265 ORTHO05D002400 4.5e-07 61.2 127 36.2
ECA248G3395 Erigeron canadensis HOM05D000006 ORTHO05D000091 5.8e-07 60.8 49 55.1
Medtr3g020820 Medicago truncatula HOM05D002265 ORTHO05D002400 5.8e-07 60.8 56 51.8
Os05g0381700 Oryza sativa ssp. japonica HOM05D002265 ORTHO05D002400 5.8e-07 60.8 48 52.1
BcaC06g32104 Brassica carinata HOM05D002265 ORTHO05D002400 7.6e-07 60.5 120 35.0
Manes.04G164600 Manihot esculenta HOM05D002265 ORTHO05D002400 7.6e-07 60.5 228 27.2
Sp4g21190 Schrenkiella parvula HOM05D002265 ORTHO05D002400 1.0e-06 60.1 131 32.8
Solyc04g017750.4 Solanum lycopersicum HOM05D002265 ORTHO05D002400 1.3e-06 59.7 558 24.9
Actinidia21526 Actinidia chinensis HOM05D002265 ORTHO05D002400 1.7e-06 59.3 49 57.1
CAN.G745.16 Capsicum annuum HOM05D002265 ORTHO05D002400 1.7e-06 59.3 48 58.3
Migut.N01816 Erythranthe guttata HOM05D002265 ORTHO05D002400 1.7e-06 59.3 49 55.1
Peaxi162Scf00047g00214 Petunia axillaris HOM05D002265 ORTHO05D002400 1.7e-06 59.3 48 54.2
SalBow6G1498 Salvia bowleyana HOM05D002265 ORTHO05D002400 2.2e-06 58.9 59 47.5
Zm00001eb141000 Zea mays HOM05D002265 ORTHO05D002400 2.2e-06 58.9 48 60.4
MSTRG.5058 Avicennia marina HOM05D002265 ORTHO05D002400 2.9e-06 58.5 48 56.2
CiPaw.14G006100 Carya illinoinensis HOM05D002265 ORTHO05D002400 3.8e-06 58.2 146 32.2
Glyma.12G039600 Glycine max HOM05D002265 ORTHO05D002400 3.8e-06 58.2 249 28.1
Zm00001eb363070 Zea mays HOM05D002265 ORTHO05D002400 3.8e-06 58.2 68 45.6
HanXRQChr13g0394021 Helianthus annuus HOM05D002265 ORTHO05D002400 4.9e-06 57.8 48 56.2
MD02G1294500 Malus domestica HOM05D002265 ORTHO05D002400 4.9e-06 57.8 165 32.7
VMungo1383G3245 Vigna mungo HOM05D002265 ORTHO05D002400 6.5e-06 57.4 749 23.1
CDE08G0554 Ceratophyllum demersum HOM05D002265 ORTHO05D002400 8.4e-06 57.0 56 50.0
DCAR_022353 Daucus carota HOM05D002265 ORTHO05D002400 8.4e-06 57.0 45 55.6
Nitab4.5_0013777g0010 Nicotiana tabacum HOM05D002265 ORTHO05D002400 8.4e-06 57.0 48 52.1
Phvul.011G041700 Phaseolus vulgaris HOM05D002265 ORTHO05D002400 8.4e-06 57.0 46 56.5
VMungo1127G0897 Vigna mungo HOM05D002265 ORTHO05D002400 8.4e-06 57.0 99 38.4


User provided reference genes

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