Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g32083 Brassica carinata HOM05D001312 ORTHO05D008018 1.6e-250 869.0 440 100.0
C09p73160 Brassica napus HOM05D001312 ORTHO05D008018 2.8e-231 805.1 441 92.5
BolC9t60051H Brassica oleracea HOM05D001312 ORTHO05D008018 5.2e-230 800.8 441 92.3
A10p32330 Brassica napus HOM05D001312 ORTHO05D008018 4.9e-228 794.3 441 91.2
BraA10t45274Z Brassica rapa HOM05D001312 ORTHO05D008018 4.9e-228 794.3 441 91.2
Sp6g38960 Schrenkiella parvula HOM05D001312 ORTHO05D008018 8.3e-228 793.5 440 91.4
Thhalv10013569m.g Eutrema salsugineum HOM05D001312 ORTHO05D008018 1.1e-224 783.1 440 90.0
AT5G03770 Arabidopsis thaliana HOM05D001312 ORTHO05D008018 1.8e-222 775.8 439 87.5
Carub.0006s0268 Capsella rubella HOM05D001312 ORTHO05D008018 4.4e-221 771.2 439 86.8
AL6G13310 Arabidopsis lyrata HOM05D001312 ORTHO05D008018 1.0e-217 760.0 462 83.3
THA.LOC104816378 Tarenaya hassleriana HOM05D001312 ORTHO05D008018 1.8e-182 642.9 436 72.9
Cpa.g.sc5.99 Carica papaya HOM05D001312 ORTHO05D008018 3.3e-168 595.5 434 67.3
CSS0009438 Camellia sinensis var. sinensis HOM05D001312 ORTHO05D008018 1.3e-167 593.6 436 66.7
Aa31LG1G21490 Aethionema arabicum HOM05D001312 ORTHO05D008018 1.6e-167 593.2 407 74.0
CSS0027895 Camellia sinensis var. sinensis HOM05D001312 ORTHO05D008018 4.8e-167 591.7 436 66.5
vmacro07336 Vaccinium macrocarpon HOM05D001312 ORTHO05D008018 2.0e-165 586.3 436 65.1
Thecc.05G079000 Theobroma cacao HOM05D001312 ORTHO05D008018 4.9e-164 581.6 434 65.0
MD14G1093900 Malus domestica HOM05D001312 ORTHO05D008018 1.4e-163 580.1 431 65.0
RcHm_v2.0_Chr3g0471781 Rosa chinensis HOM05D001312 ORTHO05D008018 1.4e-163 580.1 434 65.2
FvH4_6g17520 Fragaria vesca HOM05D001312 ORTHO05D008018 2.1e-162 576.2 434 65.2
Gorai.009G409200 Gossypium raimondii HOM05D001312 ORTHO05D008018 1.8e-161 573.2 440 63.2
FAN05G3053 Fragaria x ananassa HOM05D001312 ORTHO05D008018 2.3e-161 572.8 443 64.1
FAN05G0775 Fragaria x ananassa HOM05D001312 ORTHO05D008018 5.1e-161 571.6 443 64.1
Gohir.D04G105500 Gossypium hirsutum HOM05D001312 ORTHO05D008018 1.1e-160 570.5 440 63.0
Potri.016G095900 Populus trichocarpa HOM05D001312 ORTHO05D008018 1.9e-160 569.7 434 65.0
TAR633G1314 Trochodendron aralioides HOM05D001312 ORTHO05D001832 5.7e-160 568.2 436 63.1
Actinidia39872 Actinidia chinensis HOM05D001312 ORTHO05D008018 7.4e-160 567.8 437 64.5
CANSAT80G2114 Cannabis sativa HOM05D001312 ORTHO05D008018 2.8e-159 565.8 432 63.9
TWI53G1380 Tripterygium wilfordii HOM05D001312 ORTHO05D008018 2.4e-158 562.8 434 60.8
FAN14G3191 Fragaria x ananassa HOM05D001312 ORTHO05D008018 1.5e-157 560.1 460 61.5
arahy.Tifrunner.gnm1.ann1.42C0B0 Arachis hypogaea HOM05D001312 ORTHO05D008018 5.9e-157 558.1 433 63.0
arahy.Tifrunner.gnm1.ann1.C1UQYX Arachis hypogaea HOM05D001312 ORTHO05D008018 5.9e-157 558.1 433 63.0
COL.COLO4_22294 Corchorus olitorius HOM05D001312 ORTHO05D008018 1.3e-156 557.0 437 63.6
Rhsim03G0083100 Rhododendron simsii HOM05D001312 ORTHO05D008018 1.7e-156 556.6 409 66.5
Aqoxy1G00967 Aquilegia oxysepala HOM05D001312 ORTHO05D008018 5.0e-156 555.1 436 62.8
CiPaw.10G004200 Carya illinoinensis HOM05D001312 ORTHO05D008018 1.1e-155 553.9 434 62.0
FAN02G1263 Fragaria x ananassa HOM05D001312 ORTHO05D008018 9.4e-155 550.8 434 63.6
Glyma.10G065300 Glycine max HOM05D001312 ORTHO05D008018 9.4e-155 550.8 436 62.6
PGSC0003DMG400028176 Solanum tuberosum HOM05D001312 ORTHO05D008018 9.4e-155 550.8 437 61.8
TPR.G5684 Trifolium pratense HOM05D001312 ORTHO05D008018 6.1e-154 548.1 436 61.0
VMungo0720G0477 Vigna mungo HOM05D001312 ORTHO05D008018 1.0e-153 547.4 436 62.4
Migut.J00495 Erythranthe guttata HOM05D001312 ORTHO05D008018 1.8e-153 546.6 433 61.7
Phvul.007G224100 Phaseolus vulgaris HOM05D001312 ORTHO05D008018 3.0e-153 545.8 436 62.2
FAN09G2766 Fragaria x ananassa HOM05D001312 ORTHO05D008018 6.7e-153 544.7 460 60.2
HanXRQChr01g0028401 Helianthus annuus HOM05D001312 ORTHO05D008018 2.5e-152 542.7 436 60.8
Lj5g0006635 Lotus japonicus HOM05D001312 ORTHO05D008018 1.3e-151 540.4 438 61.0
Medtr1g061560 Medicago truncatula HOM05D001312 ORTHO05D008018 1.7e-151 540.0 436 61.5
MSTRG.5801 Avicennia marina HOM05D001312 ORTHO05D008018 2.2e-151 539.7 435 59.8
Lsat_1_v5_gn_1_50640 Lactuca sativa HOM05D001312 ORTHO05D008018 8.2e-151 537.7 434 60.4
QL07p040881 Quercus lobata HOM05D001312 ORTHO05D008018 5.3e-150 535.0 505 53.9
ClCG04G009690 Citrullus lanatus HOM05D001312 ORTHO05D008018 6.9e-150 534.6 437 59.0
Nitab4.5_0004490g0050 Nicotiana tabacum HOM05D001312 ORTHO05D008018 2.0e-149 533.1 465 57.6
Eucgr.A01566 Eucalyptus grandis HOM05D001312 ORTHO05D008018 3.4e-149 532.3 432 60.2
Sed0012062 Sechium edule HOM05D001312 ORTHO05D008018 3.4e-149 532.3 434 59.7
GSVIVG01033751001 Vitis vinifera HOM05D001312 ORTHO05D008018 3.4e-149 532.3 386 67.1
CsaV3_6G040350 Cucumis sativus L. HOM05D001312 ORTHO05D008018 5.9e-149 531.6 434 58.1
ECA248G1880 Erigeron canadensis HOM05D001312 ORTHO05D008018 1.7e-148 530.0 435 59.1
Lj3A1005G38 Lonicera japonica HOM05D001312 ORTHO05D008018 1.4e-147 526.9 486 55.1
PSO339G3022 Papaver somniferum HOM05D001312 ORTHO05D008018 2.7e-146 522.7 427 59.5
PSO063G2793 Papaver somniferum HOM05D001312 ORTHO05D008018 1.8e-145 520.0 468 55.1
Gohir.A04G066728 Gossypium hirsutum HOM05D001312 ORTHO05D008018 8.8e-145 517.7 385 66.2
SalBow3G2703 Salvia bowleyana HOM05D001312 ORTHO05D008018 1.1e-144 517.3 463 56.2
Sabra16G0101200 Salix brachista HOM05D001312 ORTHO05D008018 1.7e-143 513.5 547 51.0
Solyc10g083710.2 Solanum lycopersicum HOM05D001312 ORTHO05D008018 1.7e-143 513.5 437 58.4
Cc06_g05050 Coffea canephora HOM05D001312 ORTHO05D008018 2.8e-143 512.7 432 58.6
CARHR209530 Cardamine hirsuta HOM05D001312 ORTHO05D008018 1.1e-142 510.8 291 85.9
SGA_v2.0_scaffold40G15429 Striga asiatica HOM05D001312 ORTHO05D008018 1.1e-142 510.8 443 58.2
Nn6g35083 Nelumbo nucifera HOM05D001312 ORTHO05D008018 4.1e-142 508.8 432 59.0
Manes.08G018900 Manihot esculenta HOM05D001312 ORTHO05D008018 5.3e-142 508.4 381 65.4
Atru.BG.216.p Acer truncatum HOM05D001312 ORTHO05D008018 2.6e-141 506.1 433 59.8
EL10Ac7g16768 Beta vulgaris HOM05D001312 ORTHO05D008018 3.5e-141 505.8 435 56.6
Dinv35859 Davidia involucrata HOM05D001312 ORTHO05D008018 3.5e-141 505.8 360 67.5
Haze_19515 Corylus avellana HOM05D001312 ORTHO05D008018 4.7e-138 495.4 436 57.1
MELO3C024510.2 Cucumis melo HOM05D001312 ORTHO05D008018 8.0e-138 494.6 385 61.6
Sc02g0001220 Simmondsia chinensis HOM05D001312 ORTHO05D008018 1.1e-136 490.7 385 61.0
ATR0820G168 Amborella trichopoda HOM05D001312 ORTHO05D008018 1.1e-134 484.2 435 56.1
Oeu039841.2 Olea europaea HOM05D001312 ORTHO05D008018 2.4e-134 483.0 562 47.9
Nitab4.5_0000132g0320 Nicotiana tabacum HOM05D001312 ORTHO05D008018 5.0e-132 475.3 465 53.1
SEGI_32755 Sequoiadendron giganteum HOM05D001312 ORTHO05D008018 6.1e-130 468.4 426 53.8
CiPaw.09G007400 Carya illinoinensis HOM05D001312 ORTHO05D008018 2.2e-127 459.9 370 62.7
Ca_11617_v3 Cicer arietinum L. HOM05D001312 ORTHO05D008018 3.7e-127 459.1 416 55.8
Zm00001eb147410 Zea mays HOM05D001312 ORTHO05D008018 2.5e-123 446.4 430 52.6
Peaxi162Scf00110g01214 Petunia axillaris HOM05D001312 ORTHO05D008018 4.5e-117 425.6 450 51.8
Prupe.7G120300 Prunus persica HOM05D001312 ORTHO05D008018 2.3e-116 423.3 318 65.4
unitig_744.g24689 Utricularia gibba HOM05D001312 ORTHO05D008018 3.8e-116 422.5 425 51.5
Atru.chr8.1664 Acer truncatum HOM05D001312 ORTHO05D008018 1.5e-115 420.6 318 64.8
Ah.15g091190 Amaranthus hybridus HOM05D001312 ORTHO05D008018 2.3e-113 413.3 398 52.5
Hma1.2p1_0651F.1_g195720 Hydrangea macrophylla HOM05D001312 ORTHO05D008018 1.5e-112 410.6 325 64.0
SMO364G0357 Selaginella moellendorffii HOM05D001312 ORTHO05D008018 7.8e-109 398.3 429 49.4
Pp3c21_8090 Physcomitrium patens HOM05D001312 ORTHO05D008018 8.9e-105 384.8 428 46.0
AagrBONN_evm.TU.Sc2ySwM_344.3661 Anthoceros agrestis HOM05D001312 ORTHO05D008018 1.7e-103 380.6 433 45.5
MBI01_g23067_MAGBIO Magnolia biondii HOM05D001312 ORTHO05D008018 3.0e-100 369.8 285 61.4
Mapoly0002s0209 Marchantia polymorpha HOM05D001312 ORTHO05D008018 3.6e-98 362.8 427 44.5
Ciclev10032390m.g Citrus clementina HOM05D001312 ORTHO05D008018 4.9e-95 352.4 251 68.1
Psat6g076240 Pisum sativum HOM05D001312 ORTHO05D008018 7.8e-93 345.1 280 62.1
DCAR_015029 Daucus carota HOM05D001312 ORTHO05D008018 1.2e-90 337.8 318 54.4
CBR_g874 Chara braunii HOM05D001312 ORTHO05D008018 3.2e-86 323.2 362 46.7
Hund20444 Selenicereus undatus HOM05D001312 ORTHO05D008018 2.2e-79 300.4 287 56.1
Os01g0857300 Oryza sativa ssp. japonica HOM05D001312 ORTHO05D008018 9.0e-57 225.3 190 61.6
CARHR208850 Cardamine hirsuta HOM05D001312 ORTHO05D008018 1.3e-52 211.5 122 83.6
Sopen10g033180 Solanum pennellii HOM05D001312 ORTHO05D008018 5.1e-52 209.5 180 60.0
AUR62037894 Chenopodium quinoa HOM05D001312 ORTHO05D008018 4.3e-51 206.5 284 42.3
Lalb_Chr21g0315421 Lupinus albus HOM05D001312 ORTHO05D008018 4.1e-49 199.9 150 66.0
Lalb_Chr21g0315431 Lupinus albus HOM05D001312 ORTHO05D008018 2.1e-45 187.6 155 60.0
AUR62033601 Chenopodium quinoa HOM05D001312 ORTHO05D008018 3.3e-43 180.3 304 34.9
MBI01_g48091_MAGBIO Magnolia biondii HOM05D001312 ORTHO05D008018 2.2e-42 177.6 149 61.1
CARHR208860 Cardamine hirsuta HOM05D001312 ORTHO05D008018 3.1e-41 173.7 98 87.8
HPP92_006792 Vanilla planifolia HOM05D001312 ORTHO05D008018 4.1e-41 173.3 217 44.2
Ciclev10013092m.g Citrus clementina HOM05D001312 ORTHO05D008018 1.2e-40 171.8 126 63.5
HPP92_006796 Vanilla planifolia HOM05D001312 ORTHO05D008018 2.2e-39 167.5 351 30.2
arahy.Tifrunner.gnm1.ann1.IWGZ26 Arachis hypogaea HOM05D001312 ORTHO05D008018 1.9e-38 164.5 156 55.8
Glyma.13G150200 Glycine max HOM05D001312 ORTHO05D008018 2.3e-36 157.5 149 53.7
DCAR_015030 Daucus carota HOM05D001312 ORTHO05D008018 3.6e-29 133.7 92 65.2
Lalb_Chr21g0315441 Lupinus albus HOM05D001312 ORTHO05D008018 1.0e-28 132.1 92 63.0
Zm00001eb059120 Zea mays HOM05D000212 ORTHO05D008018 1.8e-28 131.3 94 60.6
CARHR208870 Cardamine hirsuta HOM05D001312 ORTHO05D008018 1.2e-21 108.6 71 78.9
A03p01370 Brassica napus HOM05D001312 ORTHO05D008018 1.0e-20 105.5 70 75.7
Cre13.g583100 Chlamydomonas reinhardtii HOM05D001312 ORTHO05D008018 1.5e-19 101.7 369 26.8
C03p01710 Brassica napus HOM05D001312 ORTHO05D008018 8.2e-18 95.9 64 78.1
BolC3t12726H Brassica oleracea HOM05D001312 ORTHO05D008018 8.2e-18 95.9 64 78.1
BraA03t09516Z Brassica rapa HOM05D001312 ORTHO05D008018 2.2e-15 87.8 59 74.6
arahy.Tifrunner.gnm1.ann1.UHL2QJ Arachis hypogaea HOM05D000705 ORTHO05D008018 7.2e-14 82.8 156 32.1
Zm00001eb009840 Zea mays HOM05D001312 ORTHO05D008018 2.6e-11 74.3 62 53.2
Zm00001eb059130 Zea mays HOM05D000212 ORTHO05D002824 4.4e-11 73.6 56 58.9
VMungo0251G1834 Vigna mungo HOM05D001312 ORTHO05D008018 9.8e-11 72.4 48 64.6


User provided reference genes

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