Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g32058 Brassica carinata HOM05D004402 ORTHO05D005314 1.1e-287 992.6 500 100.0
A10p32580 Brassica napus HOM05D004402 ORTHO05D005314 4.6e-283 977.2 500 98.0
BraA10t45293Z Brassica rapa HOM05D004402 ORTHO05D005314 3.0e-282 974.5 500 97.6
C09p73380 Brassica napus HOM05D004402 ORTHO05D005314 1.9e-281 971.8 501 97.6
BcaC06g32061 Brassica carinata HOM05D004402 ORTHO05D005314 2.4e-279 964.9 501 97.0
BolC9t60074H Brassica oleracea HOM05D004402 ORTHO05D005314 2.4e-279 964.9 501 97.0
BcaB01g05821 Brassica carinata HOM05D004402 ORTHO05D005314 4.0e-279 964.1 500 96.2
A03p01170 Brassica napus HOM05D004402 ORTHO05D005314 1.2e-275 952.6 500 95.6
C03p01510 Brassica napus HOM05D004402 ORTHO05D005314 2.7e-275 951.4 500 95.6
BcaB01g05839 Brassica carinata HOM05D004402 ORTHO05D005314 1.0e-274 949.5 500 95.4
BolC3t12705H Brassica oleracea HOM05D004402 ORTHO05D005314 3.9e-274 947.6 500 95.4
Sp6g39310 Schrenkiella parvula HOM05D004402 ORTHO05D005314 4.8e-272 940.6 498 94.4
BolC2t06097H Brassica oleracea HOM05D004402 ORTHO05D005314 5.3e-271 937.2 502 93.8
BraA02t04760Z Brassica rapa HOM05D004402 ORTHO05D005314 9.0e-271 936.4 504 93.8
Thhalv10013303m.g Eutrema salsugineum HOM05D004402 ORTHO05D005314 1.5e-270 935.6 508 93.1
C02p01070 Brassica napus HOM05D004402 ORTHO05D005314 9.9e-270 932.9 502 93.4
CARHR209910 Cardamine hirsuta HOM05D004402 ORTHO05D005314 7.1e-268 926.8 500 93.0
AT5G03430 Arabidopsis thaliana HOM05D004402 ORTHO05D005314 1.8e-266 922.2 500 93.0
Carub.0006s0224 Capsella rubella HOM05D004402 ORTHO05D005314 2.3e-266 921.8 500 92.4
AL6G12780 Arabidopsis lyrata HOM05D004402 ORTHO05D005314 1.6e-264 915.6 500 92.6
BraA03t09499Z Brassica rapa HOM05D004402 ORTHO05D005314 1.1e-263 912.9 474 96.4
Aa31LG1G21720 Aethionema arabicum HOM05D004402 ORTHO05D005314 1.9e-257 892.1 497 88.9
BcaB05g21840 Brassica carinata HOM05D004402 ORTHO05D005314 9.7e-249 863.2 495 88.3
THA.LOC104823232 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 4.5e-246 854.4 507 83.6
BcaC03g13007 Brassica carinata HOM05D004402 ORTHO05D005314 1.1e-239 833.2 445 93.9
THA.LOC104826918 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 3.2e-236 821.6 499 82.4
Sabra06G0097300 Salix brachista HOM05D004402 ORTHO05D005314 8.2e-224 780.4 503 75.9
Duzib093G2129 Durio zibethinus HOM05D004402 ORTHO05D005314 7.0e-223 777.3 509 75.2
Atru.chr8.1786 Acer truncatum HOM05D004402 ORTHO05D005314 3.5e-222 775.0 505 77.2
Gorai.009G414300 Gossypium raimondii HOM05D004402 ORTHO05D005314 3.5e-222 775.0 509 75.2
Potri.006G123000 Populus trichocarpa HOM05D004402 ORTHO05D005314 2.9e-221 771.9 500 76.4
Gohir.D04G110200 Gossypium hirsutum HOM05D004402 ORTHO05D005314 1.9e-220 769.2 509 74.9
Thecc.05G068900 Theobroma cacao HOM05D004402 ORTHO05D005314 2.1e-219 765.8 509 74.7
Dinv35795 Davidia involucrata HOM05D004402 ORTHO05D005314 1.4e-218 763.1 512 73.8
GSVIVG01033653001 Vitis vinifera HOM05D004402 ORTHO05D005314 2.3e-218 762.3 508 74.4
QL07p043056 Quercus lobata HOM05D004402 ORTHO05D005314 8.8e-218 760.4 504 74.8
COL.COLO4_09330 Corchorus olitorius HOM05D004402 ORTHO05D005314 3.7e-216 755.0 503 74.6
Ciclev10011527m.g Citrus clementina HOM05D004402 ORTHO05D005314 1.1e-215 753.4 506 74.9
Cfa017631 Carpinus fangiana HOM05D004402 ORTHO05D005314 1.4e-215 753.1 510 73.1
Lalb_Chr25g0288951 Lupinus albus HOM05D004402 ORTHO05D005314 3.1e-215 751.9 508 72.4
Lalb_Chr20g0112571 Lupinus albus HOM05D004402 ORTHO05D005314 4.1e-215 751.5 508 72.6
CSS0044786 Camellia sinensis var. sinensis HOM05D004402 ORTHO05D005314 9.1e-215 750.4 514 72.8
FvH4_6g16530 Fragaria vesca HOM05D004402 ORTHO05D005314 1.0e-213 746.9 508 73.4
Manes.12G084800 Manihot esculenta HOM05D004402 ORTHO05D005314 1.3e-213 746.5 510 72.9
Ca_08910_v3 Cicer arietinum L. HOM05D004402 ORTHO05D005314 6.6e-213 744.2 506 72.5
Prupe.7G128300 Prunus persica HOM05D004402 ORTHO05D005314 6.6e-213 744.2 508 73.2
Phvul.001G179700 Phaseolus vulgaris HOM05D004402 ORTHO05D005314 1.1e-212 743.4 507 72.0
CiPaw.10G128900 Carya illinoinensis HOM05D004402 ORTHO05D005314 5.5e-212 741.1 503 73.0
RcHm_v2.0_Chr3g0470441 Rosa chinensis HOM05D004402 ORTHO05D005314 5.5e-212 741.1 508 73.6
TAR633G1938 Trochodendron aralioides HOM05D004402 ORTHO05D005314 5.5e-212 741.1 511 72.0
TWI74G0242 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 9.5e-212 740.3 509 73.3
Glyma.19G184800 Glycine max HOM05D004402 ORTHO05D005314 2.1e-211 739.2 509 71.3
Lj1g0000599 Lotus japonicus HOM05D004402 ORTHO05D005314 8.0e-211 737.3 509 72.1
Medtr7g102180 Medicago truncatula HOM05D004402 ORTHO05D005314 1.8e-210 736.1 505 71.5
ClCG10G020050 Citrullus lanatus HOM05D004402 ORTHO05D005314 4.0e-210 734.9 505 72.1
CANSAT80G1177 Cannabis sativa HOM05D004402 ORTHO05D005314 6.8e-210 734.2 507 72.2
CsaV3_3G036050 Cucumis sativus L. HOM05D004402 ORTHO05D005314 8.9e-210 733.8 504 71.6
Glyma.03G184200 Glycine max HOM05D004402 ORTHO05D005314 2.0e-209 732.6 509 70.3
DCAR_015004 Daucus carota HOM05D004402 ORTHO05D005314 3.1e-207 725.3 514 71.0
TWI77G0706 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 1.2e-206 723.4 506 70.9
PGR004G2373 Punica granatum HOM05D004402 ORTHO05D005314 4.5e-206 721.5 502 71.1
Sed0020729 Sechium edule HOM05D004402 ORTHO05D005314 1.3e-205 719.9 505 70.9
DCAR_017670 Daucus carota HOM05D004402 ORTHO05D005314 3.8e-205 718.4 509 71.5
Nn6g35264 Nelumbo nucifera HOM05D004402 ORTHO05D005314 5.0e-205 718.0 512 70.9
Cc06_g04350 Coffea canephora HOM05D004402 ORTHO05D005314 8.6e-205 717.2 512 69.3
COL.COLO4_26944 Corchorus olitorius HOM05D004402 ORTHO05D005314 5.6e-204 714.5 476 74.4
arahy.Tifrunner.gnm1.ann1.DYK8MJ Arachis hypogaea HOM05D004402 ORTHO05D005314 7.3e-204 714.1 547 66.4
Oeu041487.1 Olea europaea HOM05D004402 ORTHO05D005314 1.6e-203 713.0 511 69.5
Peaxi162Scf00311g01314 Petunia axillaris HOM05D004402 ORTHO05D005314 2.1e-203 712.6 510 70.2
vmacro01673 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 2.1e-203 712.6 548 66.1
arahy.Tifrunner.gnm1.ann1.ZWC5L9 Arachis hypogaea HOM05D004402 ORTHO05D005314 2.8e-203 712.2 547 66.4
Nitab4.5_0000578g0080 Nicotiana tabacum HOM05D004402 ORTHO05D005314 2.8e-203 712.2 514 69.3
Sopen10g033410 Solanum pennellii HOM05D004402 ORTHO05D005314 4.7e-203 711.4 513 69.0
Solyc09g008310.3 Solanum lycopersicum HOM05D004402 ORTHO05D005314 6.1e-203 711.1 509 70.7
Sopen09g003130 Solanum pennellii HOM05D004402 ORTHO05D005314 1.0e-202 710.3 509 70.5
TAR636G0918 Trochodendron aralioides HOM05D004402 ORTHO05D005314 2.6e-201 705.7 492 71.5
HanXRQChr14g0454821 Helianthus annuus HOM05D004402 ORTHO05D005314 2.9e-200 702.2 510 68.6
Sc20g0005590 Simmondsia chinensis HOM05D004402 ORTHO05D005314 1.1e-199 700.3 513 66.7
PSO801G0054 Papaver somniferum HOM05D004402 ORTHO05D005314 1.4e-199 699.9 512 68.4
Lj2C120T4 Lonicera japonica HOM05D004402 ORTHO05D005314 3.2e-199 698.7 474 74.5
SalBow3G3127 Salvia bowleyana HOM05D004402 ORTHO05D005314 5.4e-199 698.0 498 70.1
SalBow2G1223 Salvia bowleyana HOM05D004402 ORTHO05D005314 1.6e-198 696.4 498 69.9
Migut.L01711 Erythranthe guttata HOM05D004402 ORTHO05D005314 1.0e-197 693.7 498 70.1
FAN14G0478 Fragaria x ananassa HOM05D004402 ORTHO05D005314 2.3e-197 692.6 508 69.7
PSO339G5499 Papaver somniferum HOM05D004402 ORTHO05D005314 5.0e-197 691.4 513 67.8
MSTRG.10328 Avicennia marina HOM05D004402 ORTHO05D005314 8.6e-197 690.6 512 67.8
CAN.G488.15 Capsicum annuum HOM05D004402 ORTHO05D005314 8.6e-197 690.6 513 67.3
MD04G1091700 Malus domestica HOM05D004402 ORTHO05D005314 1.5e-196 689.9 477 72.5
FAN09G4748 Fragaria x ananassa HOM05D004402 ORTHO05D005314 5.6e-196 688.0 508 69.5
AUR62026916 Chenopodium quinoa HOM05D004402 ORTHO05D005314 1.6e-195 686.4 505 67.5
MD12G1109700 Malus domestica HOM05D004402 ORTHO05D005314 3.6e-195 685.3 478 71.5
ECA238G0572 Erigeron canadensis HOM05D004402 ORTHO05D005314 8.0e-195 684.1 504 68.3
MELO3C009365.2 Cucumis melo HOM05D004402 ORTHO05D005314 1.8e-194 682.9 505 68.1
Eucgr.K02925 Eucalyptus grandis HOM05D004402 ORTHO05D005314 8.9e-194 680.6 509 66.6
Solyc10g083960.2 Solanum lycopersicum HOM05D004402 ORTHO05D005314 8.9e-194 680.6 513 66.7
vmacro07301 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 1.2e-193 680.2 601 60.1
Dinv37323 Davidia involucrata HOM05D004402 ORTHO05D005314 5.4e-191 671.4 453 74.8
MBI17_g34762_MAGBIO Magnolia biondii HOM05D004402 ORTHO05D005314 3.5e-190 668.7 526 63.5
VMungo1383G0058 Vigna mungo HOM05D004402 ORTHO05D005314 7.8e-190 667.5 459 71.5
ATR0910G004 Amborella trichopoda HOM05D004402 ORTHO05D005314 1.3e-189 666.8 506 66.6
Nn2g13812 Nelumbo nucifera HOM05D004402 ORTHO05D005314 3.3e-188 662.1 513 66.5
ECA248G3038 Erigeron canadensis HOM05D004402 ORTHO05D005314 1.2e-187 660.2 495 65.3
Rhsim03G0090600 Rhododendron simsii HOM05D004402 ORTHO05D005314 2.8e-187 659.1 567 61.4
FAN05G1679 Fragaria x ananassa HOM05D004402 ORTHO05D005314 1.4e-186 656.8 508 67.5
FAN05G2520 Fragaria x ananassa HOM05D004402 ORTHO05D005314 3.1e-186 655.6 508 67.3
Lsat_1_v5_gn_1_51600 Lactuca sativa HOM05D004402 ORTHO05D005314 8.9e-186 654.1 492 67.1
AUR62042064 Chenopodium quinoa HOM05D004402 ORTHO05D005314 4.4e-185 651.7 505 65.1
EL10Ac7g16646 Beta vulgaris HOM05D004402 ORTHO05D005314 9.9e-185 650.6 582 58.6
Psat3g041880 Pisum sativum HOM05D004402 ORTHO05D005314 2.2e-184 649.4 445 72.4
CDE10G0806 Ceratophyllum demersum HOM05D004402 ORTHO05D005314 1.1e-183 647.1 504 64.5
FAN02G2572 Fragaria x ananassa HOM05D004402 ORTHO05D005314 1.1e-183 647.1 534 64.6
Zm00001eb333440 Zea mays HOM05D004402 ORTHO05D005314 1.4e-183 646.7 506 63.4
Nitab4.5_0000814g0100 Nicotiana tabacum HOM05D004402 ORTHO05D005314 1.7e-181 639.8 507 65.7
Nitab4.5_0000063g0160 Nicotiana tabacum HOM05D004402 ORTHO05D005314 1.5e-180 636.7 507 65.5
SGA_v2.0_scaffold75G24834 Striga asiatica HOM05D004402 ORTHO05D005314 1.9e-180 636.3 507 64.9
Oeu005028.1 Olea europaea HOM05D004402 ORTHO05D005314 1.2e-179 633.6 528 62.9
Nitab4.5_0010955g0010 Nicotiana tabacum HOM05D004402 ORTHO05D005314 2.4e-178 629.4 528 63.3
Ah.08g211550 Amaranthus hybridus HOM05D004402 ORTHO05D005314 6.8e-178 627.9 509 62.3
unitig_60.g25815 Utricularia gibba HOM05D004402 ORTHO05D005314 5.8e-177 624.8 504 62.5
HPP92_025807 Vanilla planifolia HOM05D004402 ORTHO05D005314 2.2e-176 622.9 511 63.0
Peaxi162Scf00722g00015 Petunia axillaris HOM05D004402 ORTHO05D005314 6.4e-176 621.3 514 63.6
Actinidia28911 Actinidia chinensis HOM05D004402 ORTHO05D005314 1.5e-169 600.1 472 65.0
CAN.G900.21 Capsicum annuum HOM05D004402 ORTHO05D005314 1.9e-159 566.6 404 70.0
Mapoly0054s0056 Marchantia polymorpha HOM05D004402 ORTHO05D005314 6.0e-158 561.6 541 54.0
Migut.J00646 Erythranthe guttata HOM05D004402 ORTHO05D005314 3.0e-157 559.3 399 69.9
AagrBONN_evm.TU.Sc2ySwM_362.2690 Anthoceros agrestis HOM05D004402 ORTHO05D005314 5.1e-149 531.9 535 52.3
Haze_20522 Corylus avellana HOM05D004402 ORTHO05D005314 9.0e-146 521.2 492 57.9
Hund20335 Selenicereus undatus HOM05D004402 ORTHO05D005314 2.0e-145 520.0 663 46.5
SMO146G0130 Selaginella moellendorffii HOM05D004402 ORTHO05D005314 6.1e-142 508.4 417 61.6
SHI12325 Sapria himalayana HOM05D004402 ORTHO05D005314 6.1e-134 481.9 453 58.7
SGA_v2.0_scaffold224G42938 Striga asiatica HOM05D004402 ORTHO05D005314 8.2e-131 471.5 437 57.7
TPR.G32815 Trifolium pratense HOM05D004402 ORTHO05D005314 1.4e-127 460.7 337 68.5
Gohir.A04G071600 Gossypium hirsutum HOM05D004402 ORTHO05D005314 1.0e-117 427.9 270 78.9
PGSC0003DMG401028184 Solanum tuberosum HOM05D004402 ORTHO05D005314 1.3e-112 411.0 273 74.7
Aqoxy3G01670 Aquilegia oxysepala HOM05D004402 ORTHO05D005314 1.1e-103 381.3 280 69.3
SEGI_14784 Sequoiadendron giganteum HOM05D004402 ORTHO05D005314 8.0e-86 322.0 243 67.5
Zm00001eb128460 Zea mays HOM05D004402 ORTHO05D005314 2.6e-84 317.0 264 60.2
Gohir.A04G071700 Gossypium hirsutum HOM05D004402 ORTHO05D005314 7.5e-84 315.5 211 71.6
Zm00001eb127890 Zea mays HOM05D004402 ORTHO05D005314 1.5e-79 301.2 261 59.0
HanXRQChr07g0194721 Helianthus annuus HOM05D004402 ORTHO05D005314 1.1e-74 285.0 495 39.2
Hma1.2p1_0828F.1_g225130 Hydrangea macrophylla HOM05D004402 ORTHO05D005314 1.5e-68 264.6 214 63.6
Cre13.g592500 Chlamydomonas reinhardtii HOM05D004402 ORTHO05D005314 1.2e-62 245.0 557 32.5
PRCOL_00001257 Prasinoderma coloniale HOM05D004402 ORTHO05D005314 2.4e-58 230.7 491 32.6
Os01g0259600 Oryza sativa ssp. japonica HOM05D004402 ORTHO05D005314 6.4e-43 179.5 138 64.5
TAR636G0069 Trochodendron aralioides HOM05D004402 ORTHO05D005314 2.3e-40 171.0 173 54.3
VMungo1383G2351 Vigna mungo HOM05D004402 ORTHO05D005314 1.1e-39 168.7 106 77.4
PRCOL_00006213 Prasinoderma coloniale HOM05D004402 ORTHO05D005314 7.6e-36 156.0 184 43.5
TAR636G0130 Trochodendron aralioides HOM05D004402 ORTHO05D005314 3.3e-31 140.6 121 64.5
SalBow3G0082 Salvia bowleyana HOM05D004402 ORTHO05D005314 4.8e-30 136.7 245 39.2
SalBow3G2408 Salvia bowleyana HOM05D004402 ORTHO05D005314 1.4e-29 135.2 245 38.8
TPR.G11110 Trifolium pratense HOM05D004402 ORTHO05D005314 2.6e-28 131.0 68 86.8
PGSC0003DMG400003892 Solanum tuberosum HOM05D004402 ORTHO05D005314 3.2e-26 124.0 114 50.9
SalBow3G1023 Salvia bowleyana HOM05D004402 ORTHO05D005314 3.0e-24 117.5 80 73.8
Cfa022272 Carpinus fangiana HOM05D004402 ORTHO05D005314 2.5e-18 97.8 183 28.4
CBR_g4033 Chara braunii HOM05D004402 ORTHO05D005314 6.3e-14 83.2 115 45.2
HanXRQChr13g0396631 Helianthus annuus HOM05D004402 ORTHO05D005314 1.5e-12 78.6 76 56.6
CAN.G900.20 Capsicum annuum HOM05D004402 ORTHO05D005314 2.2e-11 74.7 61 63.9
Cfa025539 Carpinus fangiana HOM05D003439 ORTHO05D004062 3.0e-08 64.3 140 27.9
ECA233G2956 Erigeron canadensis HOM05D000002 ORTHO05D000001 3.9e-08 63.9 105 41.9
Lsat_1_v5_gn_6_17200 Lactuca sativa HOM05D004402 ORTHO05D005314 8.8e-08 62.8 80 47.5
TAR636G1582 Trochodendron aralioides HOM05D004402 ORTHO05D005314 8.8e-08 62.8 36 80.6
Cre01.g026650 Chlamydomonas reinhardtii HOM05D004402 ORTHO05D007141 1.1e-07 62.4 147 32.0
SEGI_37303 Sequoiadendron giganteum HOM05D004402 ORTHO05D005314 1.1e-07 62.4 75 40.0
CBR_g4032 Chara braunii HOM05D004402 ORTHO05D043925 3.3e-07 60.8 36 75.0


User provided reference genes

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