Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g32035 Brassica carinata HOM05D005542 ORTHO05D006708 1.6e-129 466.1 227 100.0
C09p73660 Brassica napus HOM05D005542 ORTHO05D006708 1.2e-126 456.4 227 98.2
BolC9t60101H Brassica oleracea HOM05D005542 ORTHO05D006708 2.8e-126 455.3 227 98.2
BraA02t04743Z Brassica rapa HOM05D005542 ORTHO05D006708 1.1e-119 433.3 218 95.4
C02p00780 Brassica napus HOM05D005542 ORTHO05D006708 1.9e-119 432.6 217 95.4
BolC2t06076H Brassica oleracea HOM05D005542 ORTHO05D006708 1.9e-119 432.6 217 95.4
BcaC03g13032 Brassica carinata HOM05D005542 ORTHO05D006708 5.6e-119 431.0 218 94.5
BcaB05g21852 Brassica carinata HOM05D005542 ORTHO05D006708 4.7e-118 427.9 218 95.4
AL6G12370 Arabidopsis lyrata HOM05D005542 ORTHO05D006708 9.2e-114 413.7 225 90.2
Thhalv10014320m.g Eutrema salsugineum HOM05D005542 ORTHO05D006708 3.9e-112 408.3 219 90.0
AT5G03080 Arabidopsis thaliana HOM05D005542 ORTHO05D006708 1.5e-111 406.4 228 89.0
Carub.0006s0187 Capsella rubella HOM05D005542 ORTHO05D006708 5.6e-111 404.4 228 88.6
CARHR210250 Cardamine hirsuta HOM05D005542 ORTHO05D006708 7.3e-111 404.1 219 89.5
BcaNung06917 Brassica carinata HOM05D005542 ORTHO05D006708 6.2e-110 401.0 227 89.9
THA.LOC104823241 Tarenaya hassleriana HOM05D005542 ORTHO05D006708 3.7e-107 391.7 219 84.9
A10p32790 Brassica napus HOM05D005542 ORTHO05D006708 1.9e-106 389.4 227 85.5
BraA10t45313Z Brassica rapa HOM05D005542 ORTHO05D006708 1.9e-106 389.4 227 85.5
Sp6g39610 Schrenkiella parvula HOM05D005542 ORTHO05D006708 5.2e-101 371.3 222 82.4
Cfa017517 Carpinus fangiana HOM05D005542 ORTHO05D006708 1.5e-95 353.2 213 77.9
THA.LOC104816326 Tarenaya hassleriana HOM05D005542 ORTHO05D006708 3.3e-95 352.1 222 75.2
Haze_20632 Corylus avellana HOM05D005542 ORTHO05D006708 9.6e-95 350.5 214 77.6
Aa31LG1G21960 Aethionema arabicum HOM05D005542 ORTHO05D006708 1.3e-94 350.1 221 79.6
Sed0012482 Sechium edule HOM05D005542 ORTHO05D006708 2.0e-92 342.8 213 76.1
Gorai.001G248000 Gossypium raimondii HOM05D005542 ORTHO05D006708 6.4e-91 337.8 213 75.1
Sed0011219 Sechium edule HOM05D005542 ORTHO05D006708 1.2e-89 333.6 213 73.2
TAR623G0063 Trochodendron aralioides HOM05D005542 ORTHO05D006708 1.2e-89 333.6 217 73.3
Prupe.6G240200 Prunus persica HOM05D005542 ORTHO05D006708 2.7e-89 332.4 219 74.4
Cfa017518 Carpinus fangiana HOM05D005542 ORTHO05D006708 3.5e-89 332.0 213 74.2
Sabra06G0102700 Salix brachista HOM05D005542 ORTHO05D006708 4.6e-89 331.6 213 74.2
Potri.006G130700 Populus trichocarpa HOM05D005542 ORTHO05D006708 1.0e-88 330.5 215 72.6
CANSAT80G0049 Cannabis sativa HOM05D005542 ORTHO05D006708 2.3e-88 329.3 210 73.8
VMungo1309G1614 Vigna mungo HOM05D005542 ORTHO05D006708 3.0e-88 328.9 221 73.3
Hma1.2p1_0111F.1_g053980 Hydrangea macrophylla HOM05D005542 ORTHO05D006708 3.3e-87 325.5 210 75.2
MSTRG.10302 Avicennia marina HOM05D005542 ORTHO05D006708 5.6e-87 324.7 214 76.2
RcHm_v2.0_Chr3g0468971 Rosa chinensis HOM05D005542 ORTHO05D006708 5.6e-87 324.7 209 73.2
Migut.L01666 Erythranthe guttata HOM05D005542 ORTHO05D006708 9.6e-87 323.9 213 72.3
Dinv35725 Davidia involucrata HOM05D005542 ORTHO05D006708 1.6e-86 323.2 216 72.7
Dinv37264 Davidia involucrata HOM05D005542 ORTHO05D006708 2.1e-86 322.8 213 73.7
Psat6g070280 Pisum sativum HOM05D005542 ORTHO05D006708 2.8e-86 322.4 221 69.2
TPR.G30255 Trifolium pratense HOM05D005542 ORTHO05D006708 2.8e-86 322.4 226 69.0
FAN02G2564 Fragaria x ananassa HOM05D005542 ORTHO05D006708 4.8e-86 321.6 212 72.2
AUR62040036 Chenopodium quinoa HOM05D005542 ORTHO05D006708 1.8e-85 319.7 215 69.3
HanXRQChr13g0399571 Helianthus annuus HOM05D005542 ORTHO05D006708 1.8e-85 319.7 216 72.7
AUR62042543 Chenopodium quinoa HOM05D005542 ORTHO05D006708 4.0e-85 318.5 215 69.8
Hma1.2p1_0350F.1_g132800 Hydrangea macrophylla HOM05D005542 ORTHO05D006708 6.9e-85 317.8 213 70.9
FAN05G5506 Fragaria x ananassa HOM05D005542 ORTHO05D006708 1.2e-84 317.0 212 70.8
PGR142G2113 Punica granatum HOM05D005542 ORTHO05D006708 1.5e-84 316.6 218 70.2
MD12G1123000 Malus domestica HOM05D005542 ORTHO05D006708 2.6e-84 315.8 213 73.2
SGA_v2.0_scaffold94G28671 Striga asiatica HOM05D005542 ORTHO05D006708 3.4e-84 315.5 212 72.2
FAN14G1906 Fragaria x ananassa HOM05D005542 ORTHO05D006708 9.9e-84 313.9 212 70.3
Ciclev10012685m.g Citrus clementina HOM05D005542 ORTHO05D006708 1.7e-83 313.2 218 69.3
Cc06_g03660 Coffea canephora HOM05D005542 ORTHO05D006708 1.7e-83 313.2 213 72.3
Medtr1g066770 Medicago truncatula HOM05D005542 ORTHO05D006708 1.7e-83 313.2 225 67.6
Manes.08G004100 Manihot esculenta HOM05D005542 ORTHO05D006708 2.2e-83 312.8 213 70.0
FvH4_6g15490 Fragaria vesca HOM05D005542 ORTHO05D006708 2.9e-83 312.4 212 70.3
FAN09G2765 Fragaria x ananassa HOM05D005542 ORTHO05D006708 2.9e-83 312.4 212 70.3
Sabra16G0093000 Salix brachista HOM05D005542 ORTHO05D006708 3.8e-83 312.0 213 69.0
Lsat_1_v5_gn_6_30080 Lactuca sativa HOM05D005542 ORTHO05D006708 6.4e-83 311.2 216 71.3
BolC9t60096H Brassica oleracea HOM05D005542 ORTHO05D006708 1.1e-82 310.5 169 90.5
Cpa.g.sc174.15 Carica papaya HOM05D005542 ORTHO05D006708 1.1e-82 310.5 213 70.0
Lj3P980T19 Lonicera japonica HOM05D005542 ORTHO05D006708 1.1e-82 310.5 212 69.8
Aqoxy4G03224 Aquilegia oxysepala HOM05D005542 ORTHO05D006708 1.4e-82 310.1 213 68.5
CAN.G1676.11 Capsicum annuum HOM05D005542 ORTHO05D006708 2.4e-82 309.3 213 71.4
Lj5g0010386 Lotus japonicus HOM05D005542 ORTHO05D006708 2.4e-82 309.3 218 69.3
Lsat_1_v5_gn_1_54060 Lactuca sativa HOM05D005542 ORTHO05D006708 9.3e-82 307.4 216 68.1
Potri.016G086700 Populus trichocarpa HOM05D005542 ORTHO05D006708 9.3e-82 307.4 213 68.5
TAR369G0130 Trochodendron aralioides HOM05D005542 ORTHO05D006708 1.3e-80 303.5 222 67.1
Ah.01g009250 Amaranthus hybridus HOM05D005542 ORTHO05D006708 1.8e-80 303.1 214 68.2
MSTRG.19142 Avicennia marina HOM05D005542 ORTHO05D006708 1.8e-80 303.1 213 70.0
MBI15_g16380_MAGBIO Magnolia biondii HOM05D005542 ORTHO05D006708 2.3e-80 302.8 212 69.8
HPP92_012051 Vanilla planifolia HOM05D005542 ORTHO05D006708 3.0e-80 302.4 214 68.7
Manes.08G004101 Manihot esculenta HOM05D005542 ORTHO05D006708 3.9e-80 302.0 213 69.0
Manes.08G004113 Manihot esculenta HOM05D005542 ORTHO05D006708 3.9e-80 302.0 213 69.0
Manes.08G004123 Manihot esculenta HOM05D005542 ORTHO05D006708 3.9e-80 302.0 213 69.0
Manes.08G004124 Manihot esculenta HOM05D005542 ORTHO05D006708 3.9e-80 302.0 213 69.0
Manes.08G004129 Manihot esculenta HOM05D005542 ORTHO05D006708 3.9e-80 302.0 213 69.0
Zm00001eb013250 Zea mays HOM05D005542 ORTHO05D006708 3.3e-79 298.9 217 66.8
Sc02g0001930 Simmondsia chinensis HOM05D005542 ORTHO05D006708 2.4e-77 292.7 212 68.4
Os03g0288700 Oryza sativa ssp. japonica HOM05D005542 ORTHO05D006708 3.1e-77 292.4 218 66.5
CiPaw.09G179200 Carya illinoinensis HOM05D005542 ORTHO05D006708 9.0e-77 290.8 213 67.6
Duzib128G1803 Durio zibethinus HOM05D005542 ORTHO05D006708 5.8e-76 288.1 213 66.7
ClCG02G023990 Citrullus lanatus HOM05D005542 ORTHO05D006708 7.6e-76 287.7 213 66.7
SalBow3G3282 Salvia bowleyana HOM05D005542 ORTHO05D006708 1.7e-75 286.6 215 67.4
SalBow3G3389 Salvia bowleyana HOM05D005542 ORTHO05D006708 1.7e-75 286.6 215 67.4
MELO3C014679.2 Cucumis melo HOM05D005542 ORTHO05D006708 6.5e-75 284.6 213 66.2
Gohir.D13G095800 Gossypium hirsutum HOM05D005542 ORTHO05D006708 1.1e-74 283.9 213 65.3
Oeu060090.1 Olea europaea HOM05D005542 ORTHO05D006708 1.1e-74 283.9 217 66.4
DCAR_009281 Daucus carota HOM05D005542 ORTHO05D006708 1.9e-74 283.1 215 66.0
Thecc.05G055500 Theobroma cacao HOM05D005542 ORTHO05D006708 1.9e-74 283.1 213 65.7
CsaV3_4G023360 Cucumis sativus L. HOM05D005542 ORTHO05D006708 4.2e-74 282.0 213 66.2
Phvul.007G164600 Phaseolus vulgaris HOM05D005542 ORTHO05D006708 4.2e-74 282.0 221 65.2
QL07p045114 Quercus lobata HOM05D005542 ORTHO05D006708 4.2e-74 282.0 216 66.2
SHI12539 Sapria himalayana HOM05D005542 ORTHO05D006708 9.3e-74 280.8 214 65.0
CSS0028203 Camellia sinensis var. sinensis HOM05D005542 ORTHO05D006708 1.2e-73 280.4 213 65.7
Glyma.10G050300 Glycine max HOM05D005542 ORTHO05D006708 1.6e-73 280.0 227 63.0
CSS0011727 Camellia sinensis var. sinensis HOM05D005542 ORTHO05D006708 2.1e-73 279.6 213 65.7
Gohir.A13G082150 Gossypium hirsutum HOM05D005542 ORTHO05D006708 1.3e-72 276.9 213 64.3
unitig_26.g9217 Utricularia gibba HOM05D005542 ORTHO05D006708 1.3e-72 276.9 202 67.3
Nn2g10693 Nelumbo nucifera HOM05D005542 ORTHO05D006708 1.8e-72 276.6 213 62.9
Nn2g10694 Nelumbo nucifera HOM05D005542 ORTHO05D006708 1.8e-72 276.6 213 62.9
SEGI_14044 Sequoiadendron giganteum HOM05D005542 ORTHO05D006708 1.8e-72 276.6 215 60.9
Eucgr.K03216 Eucalyptus grandis HOM05D005542 ORTHO05D006708 6.7e-72 274.6 213 65.7
Glyma.13G137800 Glycine max HOM05D005542 ORTHO05D006708 6.7e-72 274.6 228 62.7
Actinidia19704 Actinidia chinensis HOM05D005542 ORTHO05D006708 7.4e-71 271.2 184 70.7
MD04G1105500 Malus domestica HOM05D005542 ORTHO05D006708 1.3e-70 270.4 213 66.7
HanXRQChr13g0399561 Helianthus annuus HOM05D005542 ORTHO05D006708 1.6e-70 270.0 216 62.5
ATR0314G039 Amborella trichopoda HOM05D005542 ORTHO05D006708 1.1e-69 267.3 211 63.0
Sopen09g002330 Solanum pennellii HOM05D005542 ORTHO05D006708 2.4e-69 266.2 212 63.7
PSO063G7551 Papaver somniferum HOM05D005542 ORTHO05D006708 9.0e-69 264.2 212 60.8
PSO339G3338 Papaver somniferum HOM05D005542 ORTHO05D006708 9.0e-69 264.2 212 60.8
Mapoly0060s0060 Marchantia polymorpha HOM05D005542 ORTHO05D006708 1.3e-67 260.4 211 58.8
Nitab4.5_0000669g0160 Nicotiana tabacum HOM05D005542 ORTHO05D006708 1.7e-67 260.0 216 61.6
Solyc09g007450.3 Solanum lycopersicum HOM05D005542 ORTHO05D006708 6.5e-67 258.1 212 62.3
CiPaw.10G136900 Carya illinoinensis HOM05D005542 ORTHO05D006708 1.1e-66 257.3 217 59.0
Lalb_Chr21g0314711 Lupinus albus HOM05D005542 ORTHO05D006708 3.2e-66 255.8 221 58.8
Pp3c16_13170 Physcomitrium patens HOM05D005542 ORTHO05D006708 1.9e-63 246.5 212 54.2
Pp3c5_750 Physcomitrium patens HOM05D005542 ORTHO05D006708 2.2e-62 243.0 213 54.0
SMO367G0756 Selaginella moellendorffii HOM05D005542 ORTHO05D006708 4.8e-62 241.9 211 57.8
COL.COLO4_27064 Corchorus olitorius HOM05D005542 ORTHO05D006708 6.3e-62 241.5 165 69.7
HanXRQChr11g0350001 Helianthus annuus HOM05D005542 ORTHO05D006708 2.0e-60 236.5 213 55.9
COL.COLO4_27065 Corchorus olitorius HOM05D005542 ORTHO05D006708 3.4e-60 235.7 166 67.5
PGR004G0770 Punica granatum HOM05D005542 ORTHO05D006708 3.4e-60 235.7 213 58.2
Oeu029419.1 Olea europaea HOM05D005542 ORTHO05D006708 4.5e-60 235.3 165 69.7
CDE02G2407 Ceratophyllum demersum HOM05D000280 ORTHO05D000632 1.3e-59 233.8 168 68.5
EL10Ac7g16508 Beta vulgaris HOM05D005542 ORTHO05D006708 6.7e-56 221.5 167 62.9
Gohir.A04G076100 Gossypium hirsutum HOM05D005542 ORTHO05D006708 8.8e-56 221.1 160 68.1
Gohir.D04G115201 Gossypium hirsutum HOM05D005542 ORTHO05D006708 4.8e-54 215.3 213 55.9
Atru.chr5.2634 Acer truncatum HOM05D005542 ORTHO05D006708 6.9e-53 211.5 128 75.0
Peaxi162Scf00005g04018 Petunia axillaris HOM05D005542 ORTHO05D006708 5.0e-51 205.3 212 52.4
Lalb_Chr06g0171481 Lupinus albus HOM05D005542 ORTHO05D006708 1.8e-48 196.8 224 49.6
Nitab4.5_0007806g0040 Nicotiana tabacum HOM05D005542 ORTHO05D006708 1.7e-46 190.3 216 48.1
MD04G1102900 Malus domestica HOM05D005542 ORTHO05D006708 7.0e-45 184.9 131 67.9
Ca_11456_v3 Cicer arietinum L. HOM05D005542 ORTHO05D006708 3.5e-44 182.6 139 63.3
Gorai.009G419800 Gossypium raimondii HOM05D005542 ORTHO05D006708 8.0e-41 171.4 213 48.8
VMungo0720G1693 Vigna mungo HOM05D005542 ORTHO05D006708 8.2e-38 161.4 139 59.7
Rhsim04G0149700 Rhododendron simsii HOM05D005542 ORTHO05D006708 5.7e-31 138.7 92 70.7
ECA233G4004 Erigeron canadensis HOM05D005542 ORTHO05D006708 3.1e-29 132.9 91 70.3
Cpa.g.c48297 Carica papaya HOM05D005542 ORTHO05D006708 7.0e-29 131.7 95 68.4
Cre06.g272400 Chlamydomonas reinhardtii HOM05D005542 ORTHO05D006708 8.9e-16 88.2 207 32.9
Lalb_Chr05g0212641 Lupinus albus HOM05D003144 ORTHO05D003539 2.0e-07 60.5 161 30.4


User provided reference genes

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