Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g32013 Brassica carinata HOM05D007104 ORTHO05D008851 0.0e+00 1412.5 852 100.0
A10p32890 Brassica napus HOM05D007104 ORTHO05D008851 0.0e+00 1342.8 855 96.0
BraA10t45326Z Brassica rapa HOM05D007104 ORTHO05D008851 0.0e+00 1342.8 855 96.0
C09p73820 Brassica napus HOM05D007104 ORTHO05D008851 0.0e+00 1336.6 855 95.7
BolC9t60116H Brassica oleracea HOM05D007104 ORTHO05D008851 0.0e+00 1336.6 855 95.7
Sp6g39750 Schrenkiella parvula HOM05D007104 ORTHO05D008851 0.0e+00 1240.7 860 89.4
Thhalv10012661m.g Eutrema salsugineum HOM05D007104 ORTHO05D008851 0.0e+00 1228.0 868 82.7
Carub.0006s0163 Capsella rubella HOM05D007104 ORTHO05D008851 0.0e+00 1171.4 864 85.5
AL6G12100 Arabidopsis lyrata HOM05D007104 ORTHO05D008851 0.0e+00 1155.6 864 85.2
AT5G02830 Arabidopsis thaliana HOM05D007104 ORTHO05D008851 0.0e+00 1147.9 864 84.6
Aa31LG1G22070 Aethionema arabicum HOM05D007104 ORTHO05D008851 0.0e+00 1093.6 908 72.6
THA.LOC104826989 Tarenaya hassleriana HOM05D007104 ORTHO05D008851 6.4e-269 931.0 807 73.5
Duzib128G0648 Durio zibethinus HOM05D007104 ORTHO05D008851 1.3e-208 730.7 862 60.1
Thecc.05G052200 Theobroma cacao HOM05D007104 ORTHO05D008851 2.3e-205 719.9 813 62.2
Gohir.A04G077100 Gossypium hirsutum HOM05D007104 ORTHO05D008851 2.6e-201 706.4 867 58.0
Gorai.009G420800 Gossypium raimondii HOM05D007104 ORTHO05D008851 4.4e-201 705.7 866 58.5
GSVIVG01025541001 Vitis vinifera HOM05D007104 ORTHO05D008851 1.9e-191 673.7 856 57.9
Manes.08G001800 Manihot esculenta HOM05D007104 ORTHO05D008851 4.1e-191 672.5 860 57.6
CiPaw.09G181900 Carya illinoinensis HOM05D007104 ORTHO05D008851 6.8e-186 655.2 860 55.8
MD12G1126500 Malus domestica HOM05D007104 ORTHO05D008851 1.5e-185 654.1 865 55.5
Potri.006G132700 Populus trichocarpa HOM05D007104 ORTHO05D008851 7.5e-185 651.7 847 55.1
Gohir.D04G116200 Gossypium hirsutum HOM05D007104 ORTHO05D008851 2.2e-184 650.2 757 61.0
RcHm_v2.0_Chr3g0468421 Rosa chinensis HOM05D007104 ORTHO05D008851 3.7e-184 649.4 858 56.6
TAR633G1446 Trochodendron aralioides HOM05D007104 ORTHO05D008851 2.4e-183 646.7 865 56.8
Sabra06G0104200 Salix brachista HOM05D007104 ORTHO05D008851 9.2e-183 644.8 857 55.3
COL.COLO4_27102 Corchorus olitorius HOM05D007104 ORTHO05D008851 3.5e-182 642.9 693 64.8
Hma1.2p1_0111F.1_g053700 Hydrangea macrophylla HOM05D007104 ORTHO05D008851 1.0e-181 641.3 796 58.8
FAN14G4814 Fragaria x ananassa HOM05D007104 ORTHO05D008851 5.1e-181 639.0 856 55.0
Ciclev10011055m.g Citrus clementina HOM05D007104 ORTHO05D008851 6.6e-181 638.6 853 55.1
Haze_20670 Corylus avellana HOM05D007104 ORTHO05D008851 8.6e-181 638.3 826 57.0
FAN05G0960 Fragaria x ananassa HOM05D007104 ORTHO05D008851 1.9e-180 637.1 864 54.5
FvH4_6g15120 Fragaria vesca HOM05D007104 ORTHO05D008851 1.5e-177 627.5 790 57.6
Peaxi162Scf00005g05111 Petunia axillaris HOM05D007104 ORTHO05D008851 1.5e-177 627.5 862 55.6
Cfa017487 Carpinus fangiana HOM05D007104 ORTHO05D008851 2.2e-176 623.6 798 56.9
Sed0027238 Sechium edule HOM05D007104 ORTHO05D008851 6.4e-176 622.1 867 55.2
Dinv35696 Davidia involucrata HOM05D007104 ORTHO05D008851 4.6e-174 615.9 867 54.7
QL07p045556 Quercus lobata HOM05D007104 ORTHO05D008851 1.3e-173 614.4 786 57.0
Lj1g0014647 Lotus japonicus HOM05D007104 ORTHO05D008851 1.2e-171 607.8 783 57.5
Prupe.6G243100 Prunus persica HOM05D007104 ORTHO05D008851 2.1e-171 607.1 861 55.2
arahy.Tifrunner.gnm1.ann1.Z3T1FA Arachis hypogaea HOM05D007104 ORTHO05D008851 6.2e-171 605.5 790 49.0
MSTRG.19128 Avicennia marina HOM05D007104 ORTHO05D008851 3.1e-170 603.2 853 54.0
arahy.Tifrunner.gnm1.ann1.UD3AFU Arachis hypogaea HOM05D007104 ORTHO05D008851 6.9e-170 602.1 790 48.9
Nn2g12960 Nelumbo nucifera HOM05D007104 ORTHO05D008851 1.2e-169 601.3 865 54.1
Migut.J00404 Erythranthe guttata HOM05D007104 ORTHO05D008851 2.0e-169 600.5 828 55.0
EL10Ac7g17325 Beta vulgaris HOM05D007104 ORTHO05D008851 7.6e-169 598.6 789 50.6
PGR004G2266 Punica granatum HOM05D007104 ORTHO05D008851 2.2e-168 597.0 788 55.5
Glyma.19G177700 Glycine max HOM05D007104 ORTHO05D008851 2.9e-168 596.7 744 58.7
Actinidia05278 Actinidia chinensis HOM05D007104 ORTHO05D008851 6.4e-168 595.5 856 54.1
Sopen09g002070 Solanum pennellii HOM05D007104 ORTHO05D008851 6.4e-168 595.5 862 53.6
Ca_08818_v3 Cicer arietinum L. HOM05D007104 ORTHO05D008851 1.9e-167 594.0 746 56.7
Solyc09g007200.4 Solanum lycopersicum HOM05D007104 ORTHO05D008851 5.4e-167 592.4 862 53.4
FAN09G1206 Fragaria x ananassa HOM05D007104 ORTHO05D008851 9.3e-167 591.7 859 53.3
Nitab4.5_0006316g0040 Nicotiana tabacum HOM05D007104 ORTHO05D008851 1.3e-165 587.8 874 52.2
TPR.G36926 Trifolium pratense HOM05D007104 ORTHO05D008851 2.3e-165 587.0 747 56.4
Phvul.001G174000 Phaseolus vulgaris HOM05D007104 ORTHO05D008851 1.1e-164 584.7 817 53.9
Sc01g0003660 Simmondsia chinensis HOM05D007104 ORTHO05D008851 1.9e-164 583.9 745 56.4
SalBow3G1198 Salvia bowleyana HOM05D007104 ORTHO05D008851 2.5e-164 583.6 845 47.9
HanXRQChr05g0129241 Helianthus annuus HOM05D007104 ORTHO05D008851 5.3e-162 575.9 791 54.9
Medtr7g100550 Medicago truncatula HOM05D007104 ORTHO05D008851 6.9e-162 575.5 747 57.6
CSS0009185 Camellia sinensis var. sinensis HOM05D007104 ORTHO05D008851 2.6e-161 573.5 798 55.8
CAN.G350.45 Capsicum annuum HOM05D007104 ORTHO05D008851 3.4e-161 573.2 763 56.5
Lalb_Chr20g0112911 Lupinus albus HOM05D007104 ORTHO05D008851 7.6e-161 572.0 755 56.8
Cc06_g03420 Coffea canephora HOM05D007104 ORTHO05D008851 2.9e-160 570.1 874 52.5
Nitab4.5_0000848g0180 Nicotiana tabacum HOM05D007104 ORTHO05D008851 3.8e-160 569.7 860 46.2
Psat3g045920 Pisum sativum HOM05D007104 ORTHO05D008851 3.8e-160 569.7 754 56.1
CANSAT80G1630 Cannabis sativa HOM05D007104 ORTHO05D008851 6.4e-160 568.9 861 51.7
Lsat_1_v5_gn_2_109900 Lactuca sativa HOM05D007104 ORTHO05D008851 1.3e-157 561.2 795 54.1
AUR62040527 Chenopodium quinoa HOM05D007104 ORTHO05D008851 2.3e-157 560.5 816 47.7
TWI18G0316 Tripterygium wilfordii HOM05D007104 ORTHO05D008851 8.7e-157 558.5 860 51.7
vmacro08689 Vaccinium macrocarpon HOM05D007104 ORTHO05D008851 1.5e-156 557.8 788 54.4
ECA238G4406 Erigeron canadensis HOM05D001465 ORTHO05D001434 1.9e-156 557.4 824 48.9
DCAR_017721 Daucus carota HOM05D007104 ORTHO05D008851 2.1e-155 553.9 823 53.2
CsaV3_4G024380 Cucumis sativus L. HOM05D007104 ORTHO05D008851 2.8e-155 553.5 873 52.0
MELO3C003069.2 Cucumis melo HOM05D007104 ORTHO05D008851 9.0e-154 548.5 881 44.0
ClCG04G008780 Citrullus lanatus HOM05D007104 ORTHO05D008851 1.4e-151 541.2 790 54.1
ATR0594G196 Amborella trichopoda HOM05D007104 ORTHO05D008851 5.5e-151 539.3 864 48.8
VMungo1383G0332 Vigna mungo HOM05D007104 ORTHO05D008851 2.7e-150 537.0 816 51.3
PSO339G1446 Papaver somniferum HOM05D007104 ORTHO05D008851 5.6e-148 529.3 801 53.9
PSO384G2670 Papaver somniferum HOM05D007104 ORTHO05D008851 3.1e-146 523.5 797 53.7
Lj3C977G16 Lonicera japonica HOM05D007104 ORTHO05D008851 2.6e-145 520.4 845 49.0
Hund12063 Selenicereus undatus HOM05D007104 ORTHO05D008851 7.6e-145 518.8 785 46.4
MBI05_g33311_MAGBIO Magnolia biondii HOM05D007104 ORTHO05D008851 3.2e-143 513.5 806 52.2
SGA_v2.0_scaffold126G33879 Striga asiatica HOM05D007104 ORTHO05D008851 7.1e-143 512.3 859 51.1
AUR62042917 Chenopodium quinoa HOM05D007104 ORTHO05D008851 7.9e-134 482.3 783 37.8
HPP92_003603 Vanilla planifolia HOM05D007104 ORTHO05D008851 1.4e-127 461.5 771 49.9
Eucgr.K03203 Eucalyptus grandis HOM05D007104 ORTHO05D008851 1.3e-120 438.3 593 59.4
Os03g0284900 Oryza sativa ssp. japonica HOM05D007104 ORTHO05D008851 5.2e-117 426.4 790 41.1
SEGI_02163 Sequoiadendron giganteum HOM05D007104 ORTHO05D008851 4.2e-111 406.8 809 44.9
Glyma.03G177000 Glycine max HOM05D007104 ORTHO05D008851 1.2e-100 372.1 527 60.3
Aqoxy2G01885 Aquilegia oxysepala HOM05D007104 ORTHO05D008851 4.8e-99 366.7 574 48.4
CARHR210500 Cardamine hirsuta HOM05D007104 ORTHO05D008851 5.9e-89 333.2 228 79.4
Zm00001eb397200 Zea mays HOM05D007104 ORTHO05D008851 1.8e-82 311.6 661 32.5
Pp3c22_3070 Physcomitrium patens HOM05D007104 ORTHO05D008851 2.4e-82 311.2 789 42.2
Cpa.g.sc45.26 Carica papaya HOM05D007104 ORTHO05D008851 3.2e-82 310.8 540 54.8
Oeu034822.1 Olea europaea HOM05D007104 ORTHO05D008851 1.2e-81 308.9 392 58.4
Atru.chr8.2537 Acer truncatum HOM05D007104 ORTHO05D008851 2.0e-76 291.6 407 62.2
Pp3c21_12360 Physcomitrium patens HOM05D007104 ORTHO05D008851 2.4e-66 258.1 805 39.8
Mapoly0039s0098 Marchantia polymorpha HOM05D007104 ORTHO05D008851 1.2e-62 245.7 721 39.8
Atru.chr8.2538 Acer truncatum HOM05D007104 ORTHO05D008851 1.4e-58 232.3 281 45.2
unitig_16.g32855 Utricularia gibba HOM05D007104 ORTHO05D008851 3.3e-47 194.5 226 47.8
SMO351G0222 Selaginella moellendorffii HOM05D007104 ORTHO05D008851 1.6e-46 192.2 505 35.2
CDE02G1389 Ceratophyllum demersum HOM05D007104 ORTHO05D008851 1.0e-40 172.9 318 50.6
Pp3c22_3080 Physcomitrium patens HOM05D007104 ORTHO05D008851 1.5e-20 105.9 158 41.1
Oeu027653.1 Olea europaea HOM05D007104 ORTHO05D008851 2.9e-19 101.7 173 37.6
Rhsim04G0181000 Rhododendron simsii HOM05D007104 ORTHO05D008851 3.6e-17 94.7 105 44.8
RcHm_v2.0_Chr3g0468351 Rosa chinensis HOM05D007104 ORTHO05D008851 1.0e-16 93.2 74 60.8
Hma1.2p1_0111F.1_g053720 Hydrangea macrophylla HOM05D007104 ORTHO05D008851 1.1e-13 83.2 129 38.8
CBR_g39241 Chara braunii HOM05D007104 ORTHO05D008851 7.9e-09 67.0 227 44.5


User provided reference genes

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