Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g32007 Brassica carinata HOM05D004061 ORTHO05D004693 5.0e-108 394.4 195 100.0
C09p73960 Brassica napus HOM05D004061 ORTHO05D004693 3.4e-101 371.7 195 95.4
A10p32990 Brassica napus HOM05D004061 ORTHO05D004693 3.7e-95 351.7 239 77.0
BraA10t45336Z Brassica rapa HOM05D004061 ORTHO05D004693 2.0e-93 345.9 225 79.6
BcaNung03280 Brassica carinata HOM05D004061 ORTHO05D004693 6.5e-92 340.9 230 78.7
Sp6g39850 Schrenkiella parvula HOM05D004061 ORTHO05D004693 6.1e-90 334.3 227 78.0
BolC9t60131H Brassica oleracea HOM05D004061 ORTHO05D004693 3.0e-89 332.0 224 78.6
Carub.0006s0148 Capsella rubella HOM05D004061 ORTHO05D004693 2.6e-80 302.4 229 69.9
AT5G02720 Arabidopsis thaliana HOM05D004061 ORTHO05D004693 3.2e-75 285.4 227 65.6
Thhalv10016063m.g Eutrema salsugineum HOM05D004061 ORTHO05D004693 6.1e-66 254.6 144 89.6
AL6G11960 Arabidopsis lyrata HOM05D004061 ORTHO05D004693 1.3e-60 236.9 144 81.2
THA.LOC104816298 Tarenaya hassleriana HOM05D004061 ORTHO05D004693 2.0e-48 196.4 231 46.8
BolC3t12673H Brassica oleracea HOM05D004061 ORTHO05D004693 5.2e-41 171.8 115 77.4
AT3G53490 Arabidopsis thaliana HOM05D004061 ORTHO05D004693 5.4e-38 161.8 220 43.6
CARHR163390 Cardamine hirsuta HOM05D004061 ORTHO05D004693 1.2e-37 160.6 220 42.7
A07p21670 Brassica napus HOM05D004061 ORTHO05D004693 4.6e-37 158.7 206 45.6
Thhalv10010698m.g Eutrema salsugineum HOM05D004061 ORTHO05D004693 4.6e-37 158.7 220 43.6
BcaC08g44627 Brassica carinata HOM05D004061 ORTHO05D004693 2.3e-36 156.4 206 44.7
C06p21460 Brassica napus HOM05D004061 ORTHO05D004693 2.3e-36 156.4 206 44.7
Sp5g08850 Schrenkiella parvula HOM05D004061 ORTHO05D004693 2.3e-36 156.4 206 44.7
BolC6t37328H Brassica oleracea HOM05D004061 ORTHO05D004693 3.9e-36 155.6 206 44.7
Psat0s1952g0040 Pisum sativum HOM05D004061 ORTHO05D004693 6.6e-36 154.8 228 42.5
BraA07t29848Z Brassica rapa HOM05D004061 ORTHO05D004693 8.6e-36 154.5 205 43.4
AL5G34410 Arabidopsis lyrata HOM05D004061 ORTHO05D004693 1.1e-35 154.1 220 42.7
C03p01140 Brassica napus HOM05D004061 ORTHO05D004693 5.6e-35 151.8 115 70.4
Carub.0005s2006 Capsella rubella HOM05D004061 ORTHO05D004693 9.6e-35 151.0 222 41.9
Medtr7g100150 Medicago truncatula HOM05D004061 ORTHO05D004693 1.6e-34 150.2 227 38.8
Lalb_Chr25g0289361 Lupinus albus HOM05D004061 ORTHO05D004693 6.2e-34 148.3 232 40.1
Ca_08806_v3 Cicer arietinum L. HOM05D004061 ORTHO05D004693 2.4e-33 146.4 227 40.1
THA.LOC104806513 Tarenaya hassleriana HOM05D004061 ORTHO05D004693 3.1e-33 146.0 225 39.1
Actinidia05286 Actinidia chinensis HOM05D004061 ORTHO05D004693 1.2e-32 144.1 224 40.2
arahy.Tifrunner.gnm1.ann1.Y28VT2 Arachis hypogaea HOM05D004061 ORTHO05D004693 2.0e-32 143.3 215 39.1
Glyma.19G176300 Glycine max HOM05D004061 ORTHO05D004693 2.0e-32 143.3 217 38.7
Manes.08G000500 Manihot esculenta HOM05D004061 ORTHO05D004693 5.8e-32 141.7 222 38.3
Aa31LG10G9640 Aethionema arabicum HOM05D004061 ORTHO05D004693 9.9e-32 141.0 227 39.2
Solyc09g005960.4 Solanum lycopersicum HOM05D004061 ORTHO05D004693 3.8e-31 139.0 213 40.4
TAR633G1989 Trochodendron aralioides HOM05D004061 ORTHO05D004693 3.8e-31 139.0 217 38.2
Glyma.03G175700 Glycine max HOM05D004061 ORTHO05D004693 4.9e-31 138.7 226 39.4
Sopen09g001820 Solanum pennellii HOM05D004061 ORTHO05D004693 8.4e-31 137.9 213 40.8
arahy.Tifrunner.gnm1.ann1.H9GTJP Arachis hypogaea HOM05D004061 ORTHO05D004693 1.1e-30 137.5 236 36.4
Lalb_Chr20g0113041 Lupinus albus HOM05D004061 ORTHO05D004693 1.1e-30 137.5 219 37.9
Nitab4.5_0000202g0310 Nicotiana tabacum HOM05D004061 ORTHO05D004693 1.1e-30 137.5 205 39.5
Lj1g0024664 Lotus japonicus HOM05D004061 ORTHO05D004693 2.4e-30 136.3 218 39.4
ClCG04G008650 Citrullus lanatus HOM05D004061 ORTHO05D004693 3.2e-30 136.0 231 35.9
VMungo1383G1764 Vigna mungo HOM05D004061 ORTHO05D004693 3.2e-30 136.0 218 37.2
Nitab4.5_0006252g0020 Nicotiana tabacum HOM05D004061 ORTHO05D004693 5.4e-30 135.2 216 38.4
Solyc10g084500.1 Solanum lycopersicum HOM05D004061 ORTHO05D004693 5.4e-30 135.2 206 39.8
Lalb_Chr01g0019101 Lupinus albus HOM05D004061 ORTHO05D004693 9.3e-30 134.4 221 39.8
TPR.G21459 Trifolium pratense HOM05D004061 ORTHO05D004693 9.3e-30 134.4 206 38.3
Nn2g12823 Nelumbo nucifera HOM05D004061 ORTHO05D004693 1.6e-29 133.7 231 35.1
Nitab4.5_0000643g0160 Nicotiana tabacum HOM05D004061 ORTHO05D004693 2.1e-29 133.3 216 38.9
ATR0594G174 Amborella trichopoda HOM05D004061 ORTHO05D004693 2.7e-29 132.9 211 37.4
arahy.Tifrunner.gnm1.ann1.9VFE0J Arachis hypogaea HOM05D004061 ORTHO05D004693 2.7e-29 132.9 224 37.5
Sopen10g033930 Solanum pennellii HOM05D004061 ORTHO05D004693 2.7e-29 132.9 206 39.8
Peaxi162Scf00597g00310 Petunia axillaris HOM05D004061 ORTHO05D004693 4.6e-29 132.1 235 37.0
PGSC0003DMG400011053 Solanum tuberosum HOM05D004061 ORTHO05D004693 7.8e-29 131.3 206 38.8
arahy.Tifrunner.gnm1.ann1.6R95LH Arachis hypogaea HOM05D004061 ORTHO05D004693 1.3e-28 130.6 224 36.6
CiPaw.09G185500 Carya illinoinensis HOM05D004061 ORTHO05D004693 1.3e-28 130.6 227 36.6
Oeu035162.1 Olea europaea HOM05D004061 ORTHO05D004693 1.7e-28 130.2 201 37.8
Phvul.001G172800 Phaseolus vulgaris HOM05D004061 ORTHO05D004693 2.3e-28 129.8 209 38.8
CiPaw.10G139500 Carya illinoinensis HOM05D004061 ORTHO05D004693 3.0e-28 129.4 212 35.4
Lj2C103T21 Lonicera japonica HOM05D004061 ORTHO05D004693 3.9e-28 129.0 201 37.3
Rhsim05G0184700 Rhododendron simsii HOM05D004061 ORTHO05D004693 3.9e-28 129.0 202 39.1
QL07p045968 Quercus lobata HOM05D004061 ORTHO05D004693 5.1e-28 128.6 230 36.1
vmacro20095 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 8.7e-28 127.9 204 39.2
Cpa.g.sc114.23 Carica papaya HOM05D004061 ORTHO05D004693 1.1e-27 127.5 197 40.1
Migut.L01642 Erythranthe guttata HOM05D004061 ORTHO05D004693 1.1e-27 127.5 201 39.8
Gohir.A01G218200 Gossypium hirsutum HOM05D004061 ORTHO05D004693 1.1e-27 127.5 217 35.9
MBI05_g22082_MAGBIO Magnolia biondii HOM05D004061 ORTHO05D004693 1.1e-27 127.5 214 37.4
MD04G1110000 Malus domestica HOM05D004061 ORTHO05D004693 1.5e-27 127.1 227 35.7
MSTRG.19117 Avicennia marina HOM05D004061 ORTHO05D004693 1.9e-27 126.7 213 36.6
Peaxi162Scf00604g00010 Petunia axillaris HOM05D004061 ORTHO05D004693 4.3e-27 125.6 215 37.2
unitig_8.g4322 Utricularia gibba HOM05D004061 ORTHO05D004693 5.6e-27 125.2 198 38.9
Dinv37231 Davidia involucrata HOM05D004061 ORTHO05D004693 7.3e-27 124.8 144 46.5
Duzib128G0701 Durio zibethinus HOM05D004061 ORTHO05D004693 1.3e-26 124.0 146 46.6
Glyma.13G134900 Glycine max HOM05D004061 ORTHO05D004693 1.3e-26 124.0 212 34.9
CANSAT80G1299 Cannabis sativa HOM05D004061 ORTHO05D004693 1.6e-26 123.6 193 38.3
Os03g0282800 Oryza sativa ssp. japonica HOM05D004061 ORTHO05D004693 2.1e-26 123.2 202 38.6
CDE04G1398 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 2.8e-26 122.9 223 36.8
Medtr1g067320 Medicago truncatula HOM05D004061 ORTHO05D004693 2.8e-26 122.9 205 35.6
Thecc.05G049300 Theobroma cacao HOM05D004061 ORTHO05D004693 2.8e-26 122.9 145 46.9
ECA248G1662 Erigeron canadensis HOM05D004061 ORTHO05D004693 3.6e-26 122.5 197 38.1
Lj3A975G70 Lonicera japonica HOM05D004061 ORTHO05D004693 4.8e-26 122.1 229 33.6
CDE07G0262 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 6.2e-26 121.7 209 37.8
HanXRQChr11g0349611 Helianthus annuus HOM05D004061 ORTHO05D004693 6.2e-26 121.7 199 36.7
Sc20g0004290 Simmondsia chinensis HOM05D004061 ORTHO05D004693 6.2e-26 121.7 206 37.4
Lsat_1_v5_gn_1_54740 Lactuca sativa HOM05D004061 ORTHO05D004693 8.1e-26 121.3 197 37.6
Ciclev10012656m.g Citrus clementina HOM05D004061 ORTHO05D004693 1.1e-25 120.9 207 36.2
Lj5g0017469 Lotus japonicus HOM05D004061 ORTHO05D004693 1.1e-25 120.9 223 33.6
Cfa017465 Carpinus fangiana HOM05D004061 ORTHO05D004693 1.4e-25 120.6 146 44.5
Nn2g10562 Nelumbo nucifera HOM05D004061 ORTHO05D004693 1.4e-25 120.6 194 37.1
PSO384G5009 Papaver somniferum HOM05D004061 ORTHO05D004693 1.4e-25 120.6 227 34.4
Duzib093G0371 Durio zibethinus HOM05D004061 ORTHO05D004693 1.8e-25 120.2 146 45.2
MD12G1131500 Malus domestica HOM05D004061 ORTHO05D004693 1.8e-25 120.2 219 34.2
Glyma.10G046900 Glycine max HOM05D004061 ORTHO05D004693 2.4e-25 119.8 213 34.7
Gohir.D01G207100 Gossypium hirsutum HOM05D004061 ORTHO05D004693 3.1e-25 119.4 140 44.3
PSO339G1720 Papaver somniferum HOM05D004061 ORTHO05D004693 3.1e-25 119.4 227 33.9
BolC4t25479H Brassica oleracea HOM05D004061 ORTHO05D004693 9.0e-25 117.9 207 38.2
CAN.G435.5 Capsicum annuum HOM05D004061 ORTHO05D004693 1.2e-24 117.5 208 37.5
Sed0004679 Sechium edule HOM05D004061 ORTHO05D004693 1.2e-24 117.5 232 34.9
Haze_20694 Corylus avellana HOM05D004061 ORTHO05D004693 1.5e-24 117.1 230 32.6
Gorai.002G252200 Gossypium raimondii HOM05D004061 ORTHO05D004693 1.5e-24 117.1 140 44.3
HPP92_015408 Vanilla planifolia HOM05D004061 ORTHO05D004693 1.5e-24 117.1 211 37.4
TWI77G0888 Tripterygium wilfordii HOM05D004061 ORTHO05D004693 2.0e-24 116.7 217 35.9
unitig_578.g16044 Utricularia gibba HOM05D004061 ORTHO05D004693 2.0e-24 116.7 206 38.3
Potri.016G081900 Populus trichocarpa HOM05D004061 ORTHO05D004693 2.6e-24 116.3 206 35.9
vmacro08681 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 2.6e-24 116.3 196 38.3
C04p39050 Brassica napus HOM05D004061 ORTHO05D004693 3.4e-24 115.9 207 38.2
BcaC02g09159 Brassica carinata HOM05D004061 ORTHO05D004693 4.5e-24 115.5 206 37.4
Cc06_g03260 Coffea canephora HOM05D004061 ORTHO05D004693 4.5e-24 115.5 144 41.0
Aa31LG10G9670 Aethionema arabicum HOM05D004061 ORTHO05D004693 5.8e-24 115.2 203 36.5
Phvul.007G161100 Phaseolus vulgaris HOM05D004061 ORTHO05D004693 7.6e-24 114.8 219 33.8
Sed0004085 Sechium edule HOM05D004061 ORTHO05D004693 7.6e-24 114.8 146 43.8
Ca_11436_v3 Cicer arietinum L. HOM05D004061 ORTHO05D004693 9.9e-24 114.4 201 34.8
PSO699G0012 Papaver somniferum HOM05D004061 ORTHO05D004693 1.3e-23 114.0 141 44.0
GSVIVG01025578001 Vitis vinifera HOM05D004061 ORTHO05D004693 1.7e-23 113.6 141 46.1
EL10Ac7g17278 Beta vulgaris HOM05D004061 ORTHO05D004693 2.2e-23 113.2 217 33.6
HPP92_006587 Vanilla planifolia HOM05D004061 ORTHO05D004693 2.2e-23 113.2 211 34.1
TPR.G7552 Trifolium pratense HOM05D004061 ORTHO05D004693 4.9e-23 112.1 194 35.6
MELO3C003083.2 Cucumis melo HOM05D004061 ORTHO05D004693 6.4e-23 111.7 231 32.9
SMO164G0167 Selaginella moellendorffii HOM05D004061 ORTHO05D004693 6.4e-23 111.7 198 36.4
RcHm_v2.0_Chr3g0468021 Rosa chinensis HOM05D004061 ORTHO05D004693 8.4e-23 111.3 232 34.5
SEGI_28610 Sequoiadendron giganteum HOM05D004061 ORTHO05D004693 1.1e-22 110.9 143 44.1
FvH4_6g14800 Fragaria vesca HOM05D004061 ORTHO05D004693 1.4e-22 110.5 231 34.6
FAN14G1560 Fragaria x ananassa HOM05D004061 ORTHO05D004693 1.4e-22 110.5 231 34.6
Aqoxy4G03101 Aquilegia oxysepala HOM05D004061 ORTHO05D004693 1.9e-22 110.2 208 32.7
BcaB02g08525 Brassica carinata HOM05D004061 ORTHO05D004693 1.9e-22 110.2 146 44.5
FAN05G3362 Fragaria x ananassa HOM05D004061 ORTHO05D004693 1.9e-22 110.2 231 34.2
AUR62042140 Chenopodium quinoa HOM05D004061 ORTHO05D004693 2.4e-22 109.8 145 43.4
HanXRQChr13g0392181 Helianthus annuus HOM05D004061 ORTHO05D004693 3.2e-22 109.4 144 40.3
SHI12648 Sapria himalayana HOM05D004061 ORTHO05D004693 4.2e-22 109.0 202 36.1
TWI74G1169 Tripterygium wilfordii HOM05D004061 ORTHO05D004693 5.4e-22 108.6 217 33.6
AUR62044395 Chenopodium quinoa HOM05D004061 ORTHO05D004693 9.3e-22 107.8 146 43.2
Sabra16G0089600 Salix brachista HOM05D004061 ORTHO05D004693 9.3e-22 107.8 247 30.8
Atru.chr8.2505 Acer truncatum HOM05D004061 ORTHO05D004693 1.2e-21 107.5 216 36.1
Pp3c2_4500 Physcomitrium patens HOM05D004061 ORTHO05D004693 1.6e-21 107.1 210 33.8
Hund12072 Selenicereus undatus HOM05D004061 ORTHO05D004693 1.6e-21 107.1 208 35.1
BraA04t16312Z Brassica rapa HOM05D004061 ORTHO05D004693 2.1e-21 106.7 228 34.2
CsaV3_4G024510 Cucumis sativus L. HOM05D004061 ORTHO05D004693 2.1e-21 106.7 231 32.9
PGR004G1528 Punica granatum HOM05D004061 ORTHO05D004693 2.1e-21 106.7 218 34.9
FAN02G3315 Fragaria x ananassa HOM05D004061 ORTHO05D004693 2.7e-21 106.3 231 33.8
AagrBONN_evm.TU.Sc2ySwM_117.2779 Anthoceros agrestis HOM05D004061 ORTHO05D004693 6.0e-21 105.1 223 31.4
SalBow4G2839 Salvia bowleyana HOM05D004061 ORTHO05D004693 1.8e-20 103.6 238 34.5
COL.COLO4_10313 Corchorus olitorius HOM05D004061 ORTHO05D004693 3.0e-20 102.8 146 41.1
Psat6g069360 Pisum sativum HOM05D004061 ORTHO05D004693 3.0e-20 102.8 197 31.0
Prupe.6G245800 Prunus persica HOM05D004061 ORTHO05D004693 3.0e-20 102.8 219 31.5
Gorai.001G248900 Gossypium raimondii HOM05D004061 ORTHO05D004693 5.1e-20 102.1 151 37.7
ATR0594G139 Amborella trichopoda HOM05D004061 ORTHO05D004693 1.1e-19 100.9 177 35.6
A04p06100 Brassica napus HOM05D004061 ORTHO05D004693 1.1e-19 100.9 228 33.3
Dinv35674 Davidia involucrata HOM05D004061 ORTHO05D004693 2.5e-19 99.8 171 35.1
Gohir.D13G097300 Gossypium hirsutum HOM05D004061 ORTHO05D004693 3.3e-19 99.4 151 37.7
Dinv35675 Davidia involucrata HOM05D004061 ORTHO05D004693 4.3e-19 99.0 152 37.5
SGA_v2.0_scaffold35G14186 Striga asiatica HOM05D004061 ORTHO05D004693 1.6e-18 97.1 201 34.3
Gohir.A13G095435 Gossypium hirsutum HOM05D004061 ORTHO05D004693 2.1e-18 96.7 153 37.9
VMungo0720G0415 Vigna mungo HOM05D004061 ORTHO05D004693 6.2e-18 95.1 146 34.2
HPP92_026988 Vanilla planifolia HOM05D004061 ORTHO05D004693 3.1e-17 92.8 186 34.4
Oeu049603.1 Olea europaea HOM05D004061 ORTHO05D004693 1.5e-16 90.5 132 38.6
Pp3c17_20730 Physcomitrium patens HOM05D004061 ORTHO05D004693 4.5e-16 89.0 205 31.7
Pp3c17_20731 Physcomitrium patens HOM05D004061 ORTHO05D004693 4.5e-16 89.0 205 31.7
Ah.08g212360 Amaranthus hybridus HOM05D004061 ORTHO05D004693 2.9e-15 86.3 145 37.9
Aa31LG1G22160 Aethionema arabicum HOM05D004061 ORTHO05D004693 1.4e-14 84.0 95 51.6
PSO675G5312 Papaver somniferum HOM05D004061 ORTHO05D004693 1.4e-14 84.0 126 37.3
Aqoxy4G03086 Aquilegia oxysepala HOM05D003496 ORTHO05D003909 2.7e-13 79.7 203 32.0
Mapoly0179s0007 Marchantia polymorpha HOM05D004061 ORTHO05D004693 5.1e-12 75.5 127 34.6
Zm00001eb397300 Zea mays HOM05D004061 ORTHO05D004693 3.3e-11 72.8 113 40.7
vmacro08682 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 9.6e-11 71.2 69 49.3
ATR0594G136 Amborella trichopoda HOM05D004061 ORTHO05D004693 6.2e-10 68.6 156 30.8
CBR_g49836 Chara braunii HOM05D006172 ORTHO05D004693 2.2e-07 60.1 63 44.4
CARHR210670 Cardamine hirsuta HOM05D004061 ORTHO05D004693 3.8e-07 59.3 65 47.7


User provided reference genes

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