Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g31988 Brassica carinata HOM05D005843 ORTHO05D007781 3.6e-280 967.6 492 100.0
A10p33250 Brassica napus HOM05D005843 ORTHO05D007781 4.4e-254 880.9 513 88.7
BolC9t60149H Brassica oleracea HOM05D005843 ORTHO05D007781 3.7e-253 877.9 512 88.3
BcaNung02129 Brassica carinata HOM05D005843 ORTHO05D007781 7.0e-252 873.6 510 88.2
Sp6g40070 Schrenkiella parvula HOM05D005843 ORTHO05D007781 1.8e-247 859.0 509 87.2
A03p00670 Brassica napus HOM05D005843 ORTHO05D007781 1.8e-239 832.4 511 85.3
BcaNung05922 Brassica carinata HOM05D005843 ORTHO05D007781 1.2e-238 829.7 513 82.8
C03p00940 Brassica napus HOM05D005843 ORTHO05D007781 2.2e-237 825.5 509 85.1
BolC3t12656H Brassica oleracea HOM05D005843 ORTHO05D007781 2.2e-237 825.5 509 85.1
BraA03t09456Z Brassica rapa HOM05D005843 ORTHO05D007781 1.4e-236 822.8 521 82.5
BcaB01g06160 Brassica carinata HOM05D005843 ORTHO05D007781 7.1e-236 820.5 509 84.7
Thhalv10013300m.g Eutrema salsugineum HOM05D005843 ORTHO05D007781 7.1e-236 820.5 510 82.4
C09p74160 Brassica napus HOM05D005843 ORTHO05D007781 1.9e-233 812.4 487 87.1
AT5G02410 Arabidopsis thaliana HOM05D005843 ORTHO05D007781 1.6e-232 809.3 513 81.3
Carub.0006s0120 Capsella rubella HOM05D005843 ORTHO05D007781 1.5e-230 802.7 513 80.9
AL6G11640 Arabidopsis lyrata HOM05D005843 ORTHO05D007781 1.1e-228 796.6 497 82.5
CARHR211000 Cardamine hirsuta HOM05D005843 ORTHO05D007781 4.6e-227 791.2 512 78.5
Aa31LG1G22390 Aethionema arabicum HOM05D005843 ORTHO05D007781 8.2e-208 727.2 578 67.0
THA.LOC104809903 Tarenaya hassleriana HOM05D005843 ORTHO05D007781 4.6e-195 684.9 514 69.8
Atru.chr8.1969 Acer truncatum HOM05D005843 ORTHO05D007781 3.2e-180 635.6 516 62.6
Thecc.05G040300 Theobroma cacao HOM05D005843 ORTHO05D007781 3.1e-175 619.0 515 63.1
Haze_20785 Corylus avellana HOM05D005843 ORTHO05D007781 4.5e-174 615.1 530 60.8
Cpa.g.sc332.7 Carica papaya HOM05D005843 ORTHO05D007781 1.9e-172 609.8 513 61.4
Duzib128G1977 Durio zibethinus HOM05D005843 ORTHO05D007781 2.5e-172 609.4 534 60.3
TAR633G1568 Trochodendron aralioides HOM05D005843 ORTHO05D007781 4.2e-172 608.6 517 60.9
Gohir.A09G156300 Gossypium hirsutum HOM05D005843 ORTHO05D007781 5.5e-172 608.2 516 60.1
CiPaw.09G192200 Carya illinoinensis HOM05D005843 ORTHO05D007781 9.4e-172 607.4 519 59.5
Gorai.006G173000 Gossypium raimondii HOM05D005843 ORTHO05D007781 9.4e-172 607.4 516 60.3
GSVIVG01034179001 Vitis vinifera HOM05D005843 ORTHO05D007781 9.4e-172 607.4 516 59.1
Gohir.D09G151700 Gossypium hirsutum HOM05D005843 ORTHO05D007781 2.7e-171 605.9 516 60.1
QL06p005681 Quercus lobata HOM05D005843 ORTHO05D007781 3.6e-171 605.5 515 61.4
Hma1.2p1_1513F.1_g288040 Hydrangea macrophylla HOM05D005843 ORTHO05D007781 6.1e-171 604.7 512 60.7
TWI38G1602 Tripterygium wilfordii HOM05D005843 ORTHO05D007781 3.0e-170 602.4 514 59.7
TPR.G23290 Trifolium pratense HOM05D005843 ORTHO05D007781 2.0e-169 599.7 513 59.3
Oeu024347.1 Olea europaea HOM05D005843 ORTHO05D007781 5.7e-169 598.2 516 57.9
Sc20g0004950 Simmondsia chinensis HOM05D005843 ORTHO05D007781 5.7e-169 598.2 516 57.9
ECA238G1173 Erigeron canadensis HOM05D005843 ORTHO05D007781 7.5e-169 597.8 514 58.4
Manes.17G047400 Manihot esculenta HOM05D005843 ORTHO05D007781 9.7e-169 597.4 517 58.6
Eucgr.K03141 Eucalyptus grandis HOM05D005843 ORTHO05D007781 1.3e-168 597.0 515 58.4
Medtr7g060680 Medicago truncatula HOM05D005843 ORTHO05D007781 1.3e-168 597.0 516 58.7
Ca_26026_v3 Cicer arietinum L. HOM05D005843 ORTHO05D007781 2.8e-168 595.9 515 58.8
RcHm_v2.0_Chr3g0466751 Rosa chinensis HOM05D005843 ORTHO05D007781 1.1e-167 594.0 514 60.1
Glyma.07G131100 Glycine max HOM05D005843 ORTHO05D007781 4.1e-167 592.0 517 57.6
Lalb_Chr19g0125371 Lupinus albus HOM05D005843 ORTHO05D007781 4.5e-166 588.6 515 57.9
Prupe.6G254200 Prunus persica HOM05D005843 ORTHO05D007781 2.9e-165 585.9 517 60.9
FAN14G2296 Fragaria x ananassa HOM05D005843 ORTHO05D007781 3.8e-165 585.5 513 58.9
EL10Ac3g07255 Beta vulgaris HOM05D005843 ORTHO05D007781 8.5e-165 584.3 517 59.4
FAN05G5617 Fragaria x ananassa HOM05D005843 ORTHO05D007781 1.1e-164 583.9 513 58.5
Lj3C968G10 Lonicera japonica HOM05D005843 ORTHO05D007781 1.5e-164 583.6 554 56.1
QL11p021821 Quercus lobata HOM05D005843 ORTHO05D007781 1.5e-164 583.6 557 54.9
Hund24578 Selenicereus undatus HOM05D005843 ORTHO05D007781 1.9e-164 583.2 516 58.3
MELO3C003129.2 Cucumis melo HOM05D005843 ORTHO05D007781 4.2e-164 582.0 516 58.3
DCAR_014847 Daucus carota HOM05D005843 ORTHO05D007781 1.6e-163 580.1 518 57.3
CsaV3_4G024980 Cucumis sativus L. HOM05D005843 ORTHO05D007781 2.1e-163 579.7 515 58.4
MD12G1140900 Malus domestica HOM05D005843 ORTHO05D007781 4.7e-163 578.6 513 58.9
PSO339G2649 Papaver somniferum HOM05D005843 ORTHO05D007781 1.4e-162 577.0 521 58.3
Rhsim05G0192300 Rhododendron simsii HOM05D005843 ORTHO05D007781 1.4e-162 577.0 517 58.0
PSO151G0180 Papaver somniferum HOM05D005843 ORTHO05D007781 1.8e-162 576.6 517 57.6
Nn8g39667 Nelumbo nucifera HOM05D005843 ORTHO05D007781 3.0e-162 575.9 518 57.7
Cc06_g02690 Coffea canephora HOM05D005843 ORTHO05D007781 1.5e-161 573.5 515 56.1
Psat5g101400 Pisum sativum HOM05D005843 ORTHO05D007781 4.4e-161 572.0 515 56.5
CANSAT35G1785 Cannabis sativa HOM05D005843 ORTHO05D007781 7.5e-161 571.2 527 57.7
VMungo1383G2898 Vigna mungo HOM05D005843 ORTHO05D007781 1.7e-160 570.1 513 57.7
arahy.Tifrunner.gnm1.ann1.JAB43P Arachis hypogaea HOM05D005843 ORTHO05D007781 2.2e-160 569.7 517 57.4
Nitab4.5_0001190g0070 Nicotiana tabacum HOM05D005843 ORTHO05D007781 2.8e-160 569.3 516 57.9
MD04G1127500 Malus domestica HOM05D005843 ORTHO05D007781 3.7e-160 568.9 511 57.7
PGR004G0455 Punica granatum HOM05D005843 ORTHO05D007781 3.1e-159 565.8 516 56.8
CAN.G326.14 Capsicum annuum HOM05D005843 ORTHO05D007781 2.0e-158 563.1 518 56.6
PGSC0003DMG400008911 Solanum tuberosum HOM05D005843 ORTHO05D007781 2.0e-158 563.1 518 56.9
ClCG04G008190 Citrullus lanatus HOM05D005843 ORTHO05D007781 2.7e-158 562.8 515 57.7
Migut.J00332 Erythranthe guttata HOM05D005843 ORTHO05D007781 3.5e-158 562.4 515 57.1
Sed0019468 Sechium edule HOM05D005843 ORTHO05D007781 1.0e-157 560.8 488 59.6
SalBow3G1829 Salvia bowleyana HOM05D005843 ORTHO05D007781 2.3e-157 559.7 513 55.9
Sopen09g005490 Solanum pennellii HOM05D005843 ORTHO05D007781 2.3e-157 559.7 518 56.0
Peaxi162Scf00165g01322 Petunia axillaris HOM05D005843 ORTHO05D007781 6.6e-157 558.1 538 54.5
Phvul.008G100900 Phaseolus vulgaris HOM05D005843 ORTHO05D007781 1.1e-156 557.4 516 56.6
Lsat_1_v5_gn_2_17401 Lactuca sativa HOM05D005843 ORTHO05D007781 1.9e-156 556.6 502 55.2
Solyc09g010770.3 Solanum lycopersicum HOM05D005843 ORTHO05D007781 1.9e-156 556.6 511 55.8
Aqoxy6G01388 Aquilegia oxysepala HOM05D005843 ORTHO05D007781 3.0e-154 549.3 515 55.9
HanXRQChr16g0515781 Helianthus annuus HOM05D005843 ORTHO05D007781 4.9e-152 542.0 494 54.9
FAN09G3893 Fragaria x ananassa HOM05D005843 ORTHO05D007781 5.4e-151 538.5 523 55.3
FAN02G2362 Fragaria x ananassa HOM05D005843 ORTHO05D007781 2.7e-150 536.2 544 53.7
SGA_v2.0_scaffold75G24948 Striga asiatica HOM05D005843 ORTHO05D007781 4.5e-150 535.4 518 55.6
AUR62030297 Chenopodium quinoa HOM05D005843 ORTHO05D007781 1.6e-147 526.9 596 50.3
Hma1.2p1_1513F.1_g288030 Hydrangea macrophylla HOM05D005843 ORTHO05D007781 4.0e-146 522.3 465 58.5
Glyma.18G179500 Glycine max HOM05D005843 ORTHO05D007781 5.2e-146 521.9 493 55.2
HPP92_000805 Vanilla planifolia HOM05D005843 ORTHO05D007781 1.2e-145 520.8 517 52.4
CSS0035027 Camellia sinensis var. sinensis HOM05D005843 ORTHO05D007781 2.2e-144 516.5 462 60.2
Actinidia26464 Actinidia chinensis HOM05D005843 ORTHO05D000250 6.2e-139 498.4 448 58.5
Dinv35609 Davidia involucrata HOM05D005843 ORTHO05D007781 3.1e-138 496.1 430 60.2
SHI00339 Sapria himalayana HOM05D005843 ORTHO05D007781 5.8e-137 491.9 529 49.5
Sabra06G0064400 Salix brachista HOM05D005843 ORTHO05D007781 3.5e-134 482.6 524 52.3
AUR62015928 Chenopodium quinoa HOM05D005843 ORTHO05D007781 8.6e-133 478.0 494 52.6
Lj3g0024665 Lotus japonicus HOM05D005843 ORTHO05D007781 1.8e-130 470.3 456 54.2
BcaC06g31987 Brassica carinata HOM05D005843 ORTHO05D007781 1.2e-126 457.6 319 79.9
Pp3c4_12410 Physcomitrium patens HOM05D005843 ORTHO05D007781 5.6e-124 448.7 523 46.8
unitig_26.g9195 Utricularia gibba HOM05D005843 ORTHO05D007781 5.8e-121 438.7 462 51.3
Os04g0503700 Oryza sativa ssp. japonica HOM05D005843 ORTHO05D007781 1.4e-119 434.1 468 49.6
arahy.Tifrunner.gnm1.ann1.HAEF8J Arachis hypogaea HOM05D005843 ORTHO05D007781 5.8e-113 412.1 390 56.4
FvH4_6g13910 Fragaria vesca HOM05D005843 ORTHO05D007781 9.3e-111 404.8 375 56.8
SMO137G0039 Selaginella moellendorffii HOM05D005843 ORTHO05D007781 1.2e-110 404.4 509 44.2
BcaNung05921 Brassica carinata HOM05D002515 ORTHO05D002722 1.1e-100 371.3 371 59.0
Mapoly0047s0019 Marchantia polymorpha HOM05D005843 ORTHO05D007781 4.3e-100 369.4 530 41.5
A03p00710 Brassica napus HOM05D005843 ORTHO05D007781 2.5e-95 353.6 197 91.4
Dinv37176 Davidia involucrata HOM05D005843 ORTHO05D007781 9.3e-95 351.7 341 53.7
AUR62018365 Chenopodium quinoa HOM05D005843 ORTHO05D007781 1.8e-93 347.4 379 52.0
ATR0585G056 Amborella trichopoda HOM05D005843 ORTHO05D007781 2.5e-87 327.0 388 46.4
vmacro20152 Vaccinium macrocarpon HOM05D005843 ORTHO05D007781 1.0e-85 321.6 441 44.4
CDE09G0345 Ceratophyllum demersum HOM05D005843 ORTHO05D007781 7.4e-84 315.5 455 42.0
Potri.006G084800 Populus trichocarpa HOM05D005843 ORTHO05D007781 7.4e-84 315.5 328 54.9
Zm00001eb078080 Zea mays HOM05D005843 ORTHO05D007781 4.3e-76 289.7 338 45.9
Nitab4.5_0002018g0090 Nicotiana tabacum HOM05D005843 ORTHO05D007781 9.1e-74 282.0 235 62.6
AagrBONN_evm.TU.Sc2ySwM_117.1914 Anthoceros agrestis HOM05D005843 ORTHO05D007781 3.3e-68 263.5 455 36.7
SGA_v2.0_scaffold75G24944 Striga asiatica HOM05D005843 ORTHO05D007781 4.4e-60 236.5 428 38.3
CBR_g29861 Chara braunii HOM05D005843 ORTHO05D000002 1.3e-59 235.0 359 37.6
Cre01.g041300 Chlamydomonas reinhardtii HOM05D005843 ORTHO05D007781 7.2e-55 219.2 539 31.7
TAR636G2087 Trochodendron aralioides HOM05D005843 ORTHO05D007781 1.3e-51 208.4 173 59.0
VMungo1309G2290 Vigna mungo HOM05D005843 ORTHO05D007781 3.1e-42 177.2 136 64.7
DCAR_015734 Daucus carota HOM05D005843 ORTHO05D007781 3.3e-39 167.2 136 60.3
TAR636G1000 Trochodendron aralioides HOM05D005843 ORTHO05D007781 8.0e-38 162.5 126 64.3
TAR636G1324 Trochodendron aralioides HOM05D005843 ORTHO05D007781 8.0e-38 162.5 126 64.3
Haze_26583 Corylus avellana HOM05D005843 ORTHO05D007781 3.4e-36 157.1 489 29.2
AUR62040681 Chenopodium quinoa HOM05D005843 ORTHO05D007781 8.9e-29 132.5 200 40.0
C03p92170 Brassica napus HOM05D005843 ORTHO05D040940 1.5e-28 131.7 67 95.5
BolC3t21533H Brassica oleracea HOM05D005843 ORTHO05D040940 1.5e-28 131.7 67 95.5
BraA10t45356Z Brassica rapa HOM05D005843 ORTHO05D007781 9.8e-28 129.0 66 89.4
DCAR_015735 Daucus carota HOM05D005843 ORTHO05D007781 2.1e-22 111.3 60 83.3
SEGI_06123 Sequoiadendron giganteum HOM05D005843 ORTHO05D007781 4.7e-22 110.2 116 47.4
TAR636G3605 Trochodendron aralioides HOM05D005843 ORTHO05D007781 2.4e-18 97.8 57 71.9
SEGI_08652 Sequoiadendron giganteum HOM05D005843 ORTHO05D000001 7.1e-18 96.3 57 70.2
Hma1.2p1_1611F.1_g293520 Hydrangea macrophylla HOM05D005843 ORTHO05D007781 1.6e-17 95.1 52 78.8
TAR636G0893 Trochodendron aralioides HOM05D005843 ORTHO05D007781 7.3e-15 86.3 64 64.1
VMungo1309G1664 Vigna mungo HOM05D005843 ORTHO05D007781 1.8e-13 81.6 221 30.3
SEGI_16582 Sequoiadendron giganteum HOM05D005843 ORTHO05D014789 2.4e-10 71.2 74 51.4


User provided reference genes

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