Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g31968 Brassica carinata HOM05D004233 ORTHO05D003507 8.1e-61 237.3 155 100.0
A10p33670 Brassica napus HOM05D004233 ORTHO05D003507 9.6e-46 187.2 155 85.8
BraA10t45398Z Brassica rapa HOM05D004233 ORTHO05D003507 9.6e-46 187.2 156 87.2
BcaNung07269 Brassica carinata HOM05D004233 ORTHO05D003507 2.9e-42 175.6 155 77.4
BcaNung06802 Brassica carinata HOM05D004233 ORTHO05D003507 6.4e-42 174.5 155 81.9
BolC9t60190H Brassica oleracea HOM05D004233 ORTHO05D003507 6.4e-42 174.5 155 81.9
C09p74580 Brassica napus HOM05D004233 ORTHO05D003507 1.1e-41 173.7 154 82.5
Thhalv10014915m.g Eutrema salsugineum HOM05D004233 ORTHO05D003507 2.1e-32 142.9 161 70.8
AL6G10960 Arabidopsis lyrata HOM05D004233 ORTHO05D003507 1.4e-28 130.2 159 67.9
Sp6g40580 Schrenkiella parvula HOM05D004233 ORTHO05D003507 4.0e-28 128.6 155 70.3
Carub.0006s0066 Capsella rubella HOM05D004233 ORTHO05D003507 6.5e-26 121.3 156 65.4
CARHR211560 Cardamine hirsuta HOM05D004233 ORTHO05D003507 2.5e-25 119.4 155 52.3
CARHR083380 Cardamine hirsuta HOM05D004233 ORTHO05D003507 3.9e-23 112.1 153 56.9
Carub.0003s0817 Capsella rubella HOM05D004233 ORTHO05D003507 4.3e-22 108.6 153 58.8
AT3G09032 Arabidopsis thaliana HOM05D004233 ORTHO05D003507 7.4e-22 107.8 153 58.8
Sp3g07460 Schrenkiella parvula HOM05D004233 ORTHO05D003507 1.3e-21 107.1 153 57.5
THA.LOC104823286 Tarenaya hassleriana HOM05D004233 ORTHO05D003507 1.6e-21 106.7 155 51.0
AT5G01225 Arabidopsis thaliana HOM05D004233 ORTHO05D003507 2.1e-21 106.3 159 50.3
AL3G20070 Arabidopsis lyrata HOM05D004233 ORTHO05D003507 3.7e-21 105.5 153 50.3
Duzib093G0978 Durio zibethinus HOM05D004233 ORTHO05D003507 2.6e-19 99.4 159 47.2
Thhalv10022307m.g Eutrema salsugineum HOM05D004233 ORTHO05D003507 2.6e-19 99.4 153 44.4
Duzib128G0556 Durio zibethinus HOM05D004233 ORTHO05D003507 7.6e-19 97.8 159 47.2
Thecc.05G020400 Theobroma cacao HOM05D004233 ORTHO05D003507 7.6e-19 97.8 163 46.6
THA.LOC104827043 Tarenaya hassleriana HOM05D004233 ORTHO05D003507 2.2e-18 96.3 155 52.3
BcaC05g29637 Brassica carinata HOM05D004233 ORTHO05D003507 3.2e-17 92.4 153 49.0
BolC1t05478H Brassica oleracea HOM05D004233 ORTHO05D003507 3.2e-17 92.4 153 51.0
BraA01t04320Z Brassica rapa HOM05D004233 ORTHO05D003507 4.2e-17 92.0 153 51.0
Duzib106G0630 Durio zibethinus HOM05D004233 ORTHO05D003507 4.2e-17 92.0 157 46.5
BcaC09g48004 Brassica carinata HOM05D004233 ORTHO05D003507 9.3e-17 90.9 153 51.6
A05p39820 Brassica napus HOM05D004233 ORTHO05D003507 9.3e-17 90.9 153 41.8
BraA05t22766Z Brassica rapa HOM05D004233 ORTHO05D003507 9.3e-17 90.9 153 41.8
BcaC09g48049 Brassica carinata HOM05D004233 ORTHO05D003507 1.2e-16 90.5 153 50.3
C05p58860 Brassica napus HOM05D004233 ORTHO05D003507 1.6e-16 90.1 153 49.0
BolC5t34538H Brassica oleracea HOM05D004233 ORTHO05D003507 1.6e-16 90.1 153 49.0
THA.LOC104816214 Tarenaya hassleriana HOM05D004233 ORTHO05D003507 2.1e-16 89.7 152 46.1
COL.COLO4_14571 Corchorus olitorius HOM05D004233 ORTHO05D003507 3.5e-16 89.0 157 44.6
Manes.09G103100 Manihot esculenta HOM05D004233 ORTHO05D003507 6.1e-16 88.2 157 41.4
Potri.016G112700 Populus trichocarpa HOM05D004233 ORTHO05D003507 1.3e-15 87.0 152 40.8
Gohir.D09G159300 Gossypium hirsutum HOM05D004233 ORTHO05D003507 3.9e-15 85.5 160 43.1
Gorai.006G181000 Gossypium raimondii HOM05D004233 ORTHO05D003507 3.9e-15 85.5 160 43.1
Gohir.A09G163800 Gossypium hirsutum HOM05D004233 ORTHO05D003507 1.9e-14 83.2 160 42.5
Ciclev10013109m.g Citrus clementina HOM05D004233 ORTHO05D003507 2.2e-13 79.7 152 40.1
CiPaw.09G207200 Carya illinoinensis HOM05D004233 ORTHO05D003507 1.1e-12 77.4 158 39.2
Potri.006G097700 Populus trichocarpa HOM05D004233 ORTHO05D003507 4.1e-12 75.5 155 36.8
Prupe.6G271900 Prunus persica HOM05D004233 ORTHO05D003507 5.3e-12 75.1 162 37.0
QL07p036016 Quercus lobata HOM05D004233 ORTHO05D003507 1.2e-11 73.9 157 40.1
Sabra06G0075200 Salix brachista HOM05D004233 ORTHO05D003507 2.6e-11 72.8 155 38.1
Sabra16G0108400 Salix brachista HOM05D004233 ORTHO05D003507 2.9e-10 69.3 152 36.2
TAR369G1066 Trochodendron aralioides HOM05D004233 ORTHO05D003507 2.9e-10 69.3 156 37.2
Cfa017246 Carpinus fangiana HOM05D004233 ORTHO05D003507 3.8e-10 68.9 158 36.7
PGR004G1616 Punica granatum HOM05D004233 ORTHO05D003507 5.0e-10 68.6 162 35.2
Eucgr.K02995 Eucalyptus grandis HOM05D004233 ORTHO05D003507 8.5e-10 67.8 153 35.9
MELO3C009185.2 Cucumis melo HOM05D004233 ORTHO05D003507 1.1e-09 67.4 155 36.8
MD12G1161500 Malus domestica HOM05D004233 ORTHO05D003507 1.1e-09 67.4 157 35.0
Hma1.2p1_0763F.1_g214800 Hydrangea macrophylla HOM05D004233 ORTHO05D003507 1.4e-09 67.0 155 38.7
ClCG10G021920 Citrullus lanatus HOM05D004233 ORTHO05D003507 1.9e-09 66.6 155 36.1
CsaV3_3G034080 Cucumis sativus L. HOM05D004233 ORTHO05D003507 3.2e-09 65.9 155 40.0
TAR623G0525 Trochodendron aralioides HOM05D004233 ORTHO05D003507 3.2e-09 65.9 160 36.2
FAN05G3657 Fragaria x ananassa HOM05D004233 ORTHO05D003507 7.2e-09 64.7 159 32.7
Gohir.D01G215600 Gossypium hirsutum HOM05D004233 ORTHO05D003507 9.4e-09 64.3 104 46.2
Gorai.002G261800 Gossypium raimondii HOM05D004233 ORTHO05D003507 9.4e-09 64.3 104 46.2
TWI77G0758 Tripterygium wilfordii HOM05D004233 ORTHO05D003507 9.4e-09 64.3 155 39.4
Atru.chr8.2208 Acer truncatum HOM05D004233 ORTHO05D003507 1.2e-08 63.9 113 42.5
FvH4_6g11920 Fragaria vesca HOM05D004233 ORTHO05D003507 1.2e-08 63.9 159 32.1
FAN14G3430 Fragaria x ananassa HOM05D004233 ORTHO05D003507 1.2e-08 63.9 159 32.1
FAN14G4547 Fragaria x ananassa HOM05D004233 ORTHO05D003507 1.2e-08 63.9 159 32.1
DCAR_018722 Daucus carota HOM05D004233 ORTHO05D003507 1.6e-08 63.5 152 33.6
FAN02G0664 Fragaria x ananassa HOM05D004233 ORTHO05D003507 1.6e-08 63.5 159 32.1
Gohir.A01G225900 Gossypium hirsutum HOM05D004233 ORTHO05D003507 1.6e-08 63.5 104 45.2
Rhsim04G0131700 Rhododendron simsii HOM05D004233 ORTHO05D003507 1.6e-08 63.5 157 40.1
RcHm_v2.0_Chr3g0463681 Rosa chinensis HOM05D004233 ORTHO05D003507 2.7e-08 62.8 155 32.9
Dinv37074 Davidia involucrata HOM05D004233 ORTHO05D003507 4.6e-08 62.0 142 35.9
FAN09G0897 Fragaria x ananassa HOM05D004233 ORTHO05D003507 6.1e-08 61.6 159 30.8
Gohir.D04G129214 Gossypium hirsutum HOM05D004233 ORTHO05D003507 7.9e-08 61.2 118 41.5
Gorai.012G112300 Gossypium raimondii HOM05D004233 ORTHO05D003507 7.9e-08 61.2 118 41.5
Aqoxy4G02651 Aquilegia oxysepala HOM05D004233 ORTHO05D003507 1.4e-07 60.5 157 33.8
Cpa.g.sc163.4 Carica papaya HOM05D004233 ORTHO05D003507 1.4e-07 60.5 150 39.3
Hma1.2p1_0227F.1_g096330 Hydrangea macrophylla HOM05D004233 ORTHO05D003507 1.8e-07 60.1 157 32.5
Gohir.A04G088850 Gossypium hirsutum HOM05D004233 ORTHO05D003507 2.3e-07 59.7 111 41.4
Phvul.008G106800 Phaseolus vulgaris HOM05D004233 ORTHO05D003507 3.0e-07 59.3 151 35.1
VMungo1383G3137 Vigna mungo HOM05D004233 ORTHO05D003507 3.0e-07 59.3 158 32.9
Glyma.01G113100 Glycine max HOM05D004233 ORTHO05D003507 5.1e-07 58.5 155 31.0
Nn2g13635 Nelumbo nucifera HOM05D004233 ORTHO05D003507 5.1e-07 58.5 156 33.3
MBI06_g42853_MAGBIO Magnolia biondii HOM05D004233 ORTHO05D003507 6.7e-07 58.2 155 32.3
Glyma.15G073400 Glycine max HOM05D004233 ORTHO05D003507 1.1e-06 57.4 144 35.4
Sed0021305 Sechium edule HOM05D004233 ORTHO05D003507 1.1e-06 57.4 156 34.6
VMungo0331G0885 Vigna mungo HOM05D004233 ORTHO05D003507 1.5e-06 57.0 158 32.3
Sed0017480 Sechium edule HOM05D004233 ORTHO05D003507 2.0e-06 56.6 157 33.1
Oeu024626.1 Olea europaea HOM05D004233 ORTHO05D003507 5.7e-06 55.1 153 34.0
Phvul.006G186000 Phaseolus vulgaris HOM05D004233 ORTHO05D003507 5.7e-06 55.1 147 34.7
Lsat_1_v5_gn_9_35941 Lactuca sativa HOM05D004233 ORTHO05D003507 7.4e-06 54.7 154 34.4
Actinidia25149 Actinidia chinensis HOM05D004233 ORTHO05D003507 9.7e-06 54.3 154 33.8
Medtr2g013470 Medicago truncatula HOM05D004233 ORTHO05D003507 9.7e-06 54.3 149 32.9
TPR.G29052 Trifolium pratense HOM05D004233 ORTHO05D003507 9.7e-06 54.3 143 37.1


User provided reference genes

Program Settings