Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g31947 Brassica carinata HOM05D005167 ORTHO05D006312 3.4e-95 351.7 177 100.0
BcaB03g16877 Brassica carinata HOM05D005167 ORTHO05D006312 1.1e-74 283.5 199 75.9
C07p02160 Brassica napus HOM05D005167 ORTHO05D006312 2.3e-72 275.8 194 74.7
BolC7t40625H Brassica oleracea HOM05D005167 ORTHO05D006312 2.3e-72 275.8 194 74.7
BcaC06g36613 Brassica carinata HOM05D005167 ORTHO05D006312 2.6e-71 272.3 189 76.2
A03p66890 Brassica napus HOM05D005167 ORTHO05D006312 3.4e-71 271.9 194 73.7
BraA01t02792Z Brassica rapa HOM05D005167 ORTHO05D006312 3.4e-71 271.9 194 73.7
BcaC08g44461 Brassica carinata HOM05D005167 ORTHO05D006312 1.6e-68 263.1 198 71.2
SpUn0422_0010 Schrenkiella parvula HOM05D005167 ORTHO05D006312 8.6e-67 257.3 194 69.6
Thhalv10028036m.g Eutrema salsugineum HOM05D005167 ORTHO05D006312 5.8e-63 244.6 194 65.5
CARHR046110 Cardamine hirsuta HOM05D005167 ORTHO05D006312 2.7e-60 235.7 192 64.6
BcaC06g31946 Brassica carinata HOM05D005167 ORTHO05D006312 3.2e-53 212.2 171 69.6
Carub.0003s3540 Capsella rubella HOM05D005167 ORTHO05D006312 3.2e-53 212.2 192 59.4
SpUn0005_0090 Schrenkiella parvula HOM05D005167 ORTHO05D006312 1.6e-41 173.3 105 80.0
C06p19120 Brassica napus HOM05D005167 ORTHO05D006312 2.9e-38 162.5 138 65.2
BolC6t37111H Brassica oleracea HOM05D005167 ORTHO05D006312 2.9e-38 162.5 138 65.2
Atru.chr9.69 Acer truncatum HOM05D005167 ORTHO05D006312 3.8e-38 162.2 182 46.7
Cpa.g.sc15.42 Carica papaya HOM05D005167 ORTHO05D006312 5.4e-37 158.3 200 43.5
TWI31G1352 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 1.2e-36 157.1 202 43.1
CiPaw.15G107300 Carya illinoinensis HOM05D005167 ORTHO05D006312 4.6e-36 155.2 226 39.4
Ciclev10030405m.g Citrus clementina HOM05D005167 ORTHO05D006312 7.9e-36 154.5 187 46.0
Duzib116G0260 Durio zibethinus HOM05D005167 ORTHO05D006312 3.9e-35 152.1 208 40.9
Thecc.07G187300 Theobroma cacao HOM05D005167 ORTHO05D006312 3.9e-35 152.1 215 40.9
GSVIVG01029417001 Vitis vinifera HOM05D005167 ORTHO05D006312 5.1e-35 151.8 195 43.6
Nn3g20631 Nelumbo nucifera HOM05D005167 ORTHO05D006312 1.1e-34 150.6 205 41.0
TAR629G0123 Trochodendron aralioides HOM05D005167 ORTHO05D006312 1.1e-34 150.6 199 40.7
Oeu000168.1 Olea europaea HOM05D005167 ORTHO05D006312 1.9e-34 149.8 214 39.3
Prupe.4G287800 Prunus persica HOM05D005167 ORTHO05D006312 3.3e-34 149.1 207 43.0
Sed0010261 Sechium edule HOM05D005167 ORTHO05D006312 3.3e-34 149.1 195 42.1
CiPaw.15G107200 Carya illinoinensis HOM05D005167 ORTHO05D006312 9.6e-34 147.5 228 39.0
Glyma.13G026000 Glycine max HOM05D005167 ORTHO05D006312 1.3e-33 147.1 199 44.2
Aqoxy4G01544 Aquilegia oxysepala HOM05D005167 ORTHO05D006312 1.6e-33 146.7 189 42.3
Lju225A7G63 Lonicera japonica HOM05D005167 ORTHO05D006312 2.1e-33 146.4 172 44.8
Phvul.L001673 Phaseolus vulgaris HOM05D005167 ORTHO05D006312 1.8e-32 143.3 177 43.5
Actinidia12290 Actinidia chinensis HOM05D005167 ORTHO05D006312 2.4e-32 142.9 218 38.5
Gohir.A09G002900 Gossypium hirsutum HOM05D005167 ORTHO05D006312 3.1e-32 142.5 194 40.7
Gorai.006G003300 Gossypium raimondii HOM05D005167 ORTHO05D006312 4.0e-32 142.1 194 40.2
Gohir.D09G002700 Gossypium hirsutum HOM05D005167 ORTHO05D006312 5.3e-32 141.7 194 40.2
Migut.N00879 Erythranthe guttata HOM05D005167 ORTHO05D006312 1.2e-31 140.6 224 37.1
TWI15G0790 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 4.5e-31 138.7 183 44.8
Dinv01746 Davidia involucrata HOM05D005167 ORTHO05D006312 7.6e-31 137.9 262 35.1
ClCG08G000010 Citrullus lanatus HOM05D005167 ORTHO05D006312 1.3e-30 137.1 179 39.7
Cc00_g01280 Coffea canephora HOM05D005167 ORTHO05D006312 1.7e-30 136.7 177 41.8
ClCG04G000020 Citrullus lanatus HOM05D005167 ORTHO05D006312 2.9e-30 136.0 179 39.1
MELO3C034515.2 Cucumis melo HOM05D005167 ORTHO05D006312 3.8e-30 135.6 224 35.3
Lsat_1_v5_gn_8_167100 Lactuca sativa HOM05D005167 ORTHO05D006312 3.8e-30 135.6 193 37.3
Eucgr.B01586 Eucalyptus grandis HOM05D005167 ORTHO05D006312 4.9e-30 135.2 177 42.9
CAN.G989.3 Capsicum annuum HOM05D005167 ORTHO05D006312 8.4e-30 134.4 175 41.7
Nitab4.5_0007926g0020 Nicotiana tabacum HOM05D005167 ORTHO05D006312 3.2e-29 132.5 181 40.9
HanXRQChr15g0488451 Helianthus annuus HOM05D005167 ORTHO05D006312 5.4e-29 131.7 238 34.0
PSO170G3824 Papaver somniferum HOM05D005167 ORTHO05D006312 5.4e-29 131.7 261 31.8
PGSC0003DMG400014526 Solanum tuberosum HOM05D005167 ORTHO05D006312 5.4e-29 131.7 180 41.1
SGA_v2.0_scaffold401G50971 Striga asiatica HOM05D005167 ORTHO05D006312 9.3e-29 131.0 265 30.6
Nitab4.5_0001246g0010 Nicotiana tabacum HOM05D005167 ORTHO05D006312 1.6e-28 130.2 181 39.8
SalBow3G4053 Salvia bowleyana HOM05D005167 ORTHO05D006312 1.6e-28 130.2 287 31.4
Manes.18G143300 Manihot esculenta HOM05D005167 ORTHO05D006312 2.1e-28 129.8 208 38.0
Manes.18G143000 Manihot esculenta HOM05D005167 ORTHO05D006312 4.6e-28 128.6 215 37.7
Nitab4.5_0005690g0020 Nicotiana tabacum HOM05D005167 ORTHO05D006312 6.0e-28 128.3 181 40.3
HPP92_025056 Vanilla planifolia HOM05D005167 ORTHO05D006312 7.9e-28 127.9 255 31.0
Cc02_g36800 Coffea canephora HOM05D005167 ORTHO05D006312 1.3e-27 127.1 281 31.7
Sc07g0003350 Simmondsia chinensis HOM05D005167 ORTHO05D006312 1.3e-27 127.1 259 32.0
Sc07g0003360 Simmondsia chinensis HOM05D005167 ORTHO05D006312 1.3e-27 127.1 259 32.0
FAN26G1264 Fragaria x ananassa HOM05D005167 ORTHO05D006312 3.0e-27 125.9 210 39.0
FAN19G3173 Fragaria x ananassa HOM05D005167 ORTHO05D006312 3.9e-27 125.6 213 38.5
CANSAT64G2797 Cannabis sativa HOM05D005167 ORTHO05D006312 1.9e-26 123.2 206 37.9
HanXRQChr12g0386151 Helianthus annuus HOM05D005167 ORTHO05D006312 4.3e-26 122.1 180 39.4
ECA234G3362 Erigeron canadensis HOM05D005167 ORTHO05D006312 5.6e-26 121.7 189 39.7
SGA_v2.0_scaffold150G36624 Striga asiatica HOM05D005167 ORTHO05D006312 7.4e-26 121.3 191 35.1
arahy.Tifrunner.gnm1.ann1.JG47X3 Arachis hypogaea HOM05D005167 ORTHO05D006312 2.1e-25 119.8 280 30.4
Os07g0657600 Oryza sativa ssp. japonica HOM05D005167 ORTHO05D006312 2.1e-25 119.8 277 30.0
arahy.Tifrunner.gnm1.ann1.T4BBUF Arachis hypogaea HOM05D005167 ORTHO05D006312 3.7e-25 119.0 278 30.9
Sopen01g045080 Solanum pennellii HOM05D005167 ORTHO05D006312 3.7e-25 119.0 293 28.7
Sopen02g001190 Solanum pennellii HOM05D005167 ORTHO05D006312 8.1e-25 117.9 181 40.9
PGSC0003DMG400018222 Solanum tuberosum HOM05D005167 ORTHO05D006312 8.1e-25 117.9 291 28.5
Nitab4.5_0004176g0010 Nicotiana tabacum HOM05D005167 ORTHO05D006312 1.1e-24 117.5 292 28.8
MD00G1096100 Malus domestica HOM05D005167 ORTHO05D006312 2.4e-24 116.3 197 38.1
VMungo0540G0564 Vigna mungo HOM05D005167 ORTHO05D006312 2.4e-24 116.3 277 29.6
ECA248G1565 Erigeron canadensis HOM05D005167 ORTHO05D006312 3.1e-24 115.9 267 30.7
Solyc01g102670.3 Solanum lycopersicum HOM05D005167 ORTHO05D006312 3.1e-24 115.9 293 28.3
Hma1.2p1_0052F.1_g030120 Hydrangea macrophylla HOM05D005167 ORTHO05D006312 4.0e-24 115.5 305 27.2
Glyma.09G018700 Glycine max HOM05D005167 ORTHO05D006312 6.9e-24 114.8 272 28.7
QL02p104239 Quercus lobata HOM05D005167 ORTHO05D006312 6.9e-24 114.8 276 28.6
Ah.02g128610 Amaranthus hybridus HOM05D005167 ORTHO05D006312 9.0e-24 114.4 289 28.7
CAN.G1379.23 Capsicum annuum HOM05D005167 ORTHO05D006312 9.0e-24 114.4 294 27.9
Lj9C241G5 Lonicera japonica HOM05D005167 ORTHO05D006312 9.0e-24 114.4 292 27.7
Nitab4.5_0001085g0040 Nicotiana tabacum HOM05D005167 ORTHO05D006312 9.0e-24 114.4 301 29.2
EL10Ac6g13938 Beta vulgaris HOM05D005167 ORTHO05D006312 3.4e-23 112.5 295 28.5
Phvul.006G133500 Phaseolus vulgaris HOM05D005167 ORTHO05D006312 3.4e-23 112.5 275 29.5
DCAR_029460 Daucus carota HOM05D005167 ORTHO05D006312 5.8e-23 111.7 302 26.5
Nn5g27095 Nelumbo nucifera HOM05D005167 ORTHO05D006312 5.8e-23 111.7 308 27.3
Atru.chr6.56 Acer truncatum HOM05D005167 ORTHO05D006312 1.7e-22 110.2 287 28.2
Gohir.A05G123200 Gossypium hirsutum HOM05D005167 ORTHO05D006312 1.7e-22 110.2 248 29.8
RcHm_v2.0_Chr3g0496761 Rosa chinensis HOM05D005167 ORTHO05D006312 1.7e-22 110.2 247 33.2
Thecc.06G025200 Theobroma cacao HOM05D005167 ORTHO05D006312 1.7e-22 110.2 252 29.8
Lj6g0014124 Lotus japonicus HOM05D005167 ORTHO05D006312 2.2e-22 109.8 286 28.7
CANSAT01G2096 Cannabis sativa HOM05D005167 ORTHO05D006312 3.8e-22 109.0 264 29.2
Hund15261 Selenicereus undatus HOM05D005167 ORTHO05D006312 3.8e-22 109.0 297 27.3
Peaxi162Scf00194g00934 Petunia axillaris HOM05D005167 ORTHO05D006312 4.9e-22 108.6 284 27.1
Dinv24548 Davidia involucrata HOM05D000457 ORTHO05D000560 8.4e-22 107.8 310 26.5
Duzib160G0520 Durio zibethinus HOM05D005167 ORTHO05D006312 1.4e-21 107.1 253 30.0
Gohir.D05G124100 Gossypium hirsutum HOM05D005167 ORTHO05D006312 1.9e-21 106.7 248 29.4
Ciclev10001110m.g Citrus clementina HOM05D005167 ORTHO05D006312 4.2e-21 105.5 276 28.3
Lju225C0G3 Lonicera japonica HOM05D005167 ORTHO05D006312 4.2e-21 105.5 98 49.0
Gorai.009G128100 Gossypium raimondii HOM05D005167 ORTHO05D006312 5.5e-21 105.1 255 29.8
QL93p0255_0001 Quercus lobata HOM05D005167 ORTHO05D006312 9.3e-21 104.4 275 28.4
A07p01000 Brassica napus HOM05D005167 ORTHO05D006312 2.7e-20 102.8 129 48.1
TWI23G0323 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 4.6e-20 102.1 112 42.9
Gohir.D07G228750 Gossypium hirsutum HOM05D005167 ORTHO05D006312 6.0e-20 101.7 194 36.6
ATR0782G113 Amborella trichopoda HOM05D005167 ORTHO05D006312 5.1e-19 98.6 292 27.7
PGR042G3689 Punica granatum HOM05D005167 ORTHO05D006312 5.1e-19 98.6 300 26.7
Potri.003G046300 Populus trichocarpa HOM05D005167 ORTHO05D006312 1.9e-18 96.7 300 26.3
AUR62024866 Chenopodium quinoa HOM05D005167 ORTHO05D006312 2.5e-18 96.3 287 28.2
CiPaw.09G096800 Carya illinoinensis HOM05D005167 ORTHO05D006312 4.3e-18 95.5 103 42.7
Atru.chr9.63 Acer truncatum HOM05D005167 ORTHO05D006312 7.4e-18 94.7 133 36.8
QL01p053234 Quercus lobata HOM05D005167 ORTHO05D006312 1.3e-17 94.0 104 43.3
QL93p1868_0059 Quercus lobata HOM05D005167 ORTHO05D006312 1.3e-17 94.0 104 43.3
Eucgr.G00036 Eucalyptus grandis HOM05D005167 ORTHO05D006312 1.6e-17 93.6 321 24.9
vmacro19812 Vaccinium macrocarpon HOM05D005167 ORTHO05D006312 2.1e-17 93.2 133 37.6
THA.LOC104809040 Tarenaya hassleriana HOM05D005167 ORTHO05D006312 3.7e-17 92.4 104 40.4
Rhsim05G0120900 Rhododendron simsii HOM05D005167 ORTHO05D006312 8.2e-17 91.3 134 38.1
Gorai.001G263800 Gossypium raimondii HOM05D005167 ORTHO05D006312 1.1e-16 90.9 189 36.0
Haze_09951 Corylus avellana HOM05D005167 ORTHO05D006312 1.4e-16 90.5 104 40.4
FvH4_1g27954 Fragaria vesca HOM05D005167 ORTHO05D006312 1.4e-16 90.5 105 44.8
Thhalv10028065m.g Eutrema salsugineum HOM05D005167 ORTHO05D006312 3.1e-16 89.4 59 72.9
Actinidia01647 Actinidia chinensis HOM05D005167 ORTHO05D006312 5.3e-16 88.6 104 36.5
QL07p001518 Quercus lobata HOM05D005167 ORTHO05D006312 1.2e-15 87.4 223 28.3
COL.COLO4_11943 Corchorus olitorius HOM05D005167 ORTHO05D006312 1.5e-15 87.0 105 37.1
Eucgr.B01611 Eucalyptus grandis HOM05D005167 ORTHO05D006312 1.5e-15 87.0 103 41.7
CDE02G4394 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 2.6e-15 86.3 135 36.3
Oeu000169.3 Olea europaea HOM05D005167 ORTHO05D006312 1.3e-14 84.0 99 42.4
Manes.06G015900 Manihot esculenta HOM05D005167 ORTHO05D006312 3.8e-14 82.4 103 36.9
MBI17_g35115_MAGBIO Magnolia biondii HOM05D005167 ORTHO05D006312 7.2e-13 78.2 101 33.7
Aqoxy4G01501 Aquilegia oxysepala HOM05D005167 ORTHO05D006312 7.9e-12 74.7 133 34.6
Atru.chr6.45 Acer truncatum HOM05D005167 ORTHO05D006312 1.3e-11 73.9 256 26.2
AUR62032503 Chenopodium quinoa HOM05D005167 ORTHO05D000001 5.1e-11 72.0 88 39.8
QL01p052835 Quercus lobata HOM05D005167 ORTHO05D006312 1.5e-10 70.5 48 68.8
QL93p1868_0064 Quercus lobata HOM05D005167 ORTHO05D006312 1.9e-10 70.1 48 68.8
CDE02G1408 Ceratophyllum demersum HOM05D005167 ORTHO05D006312 3.3e-10 69.3 48 66.7
COL.COLO4_16251 Corchorus olitorius HOM05D005167 ORTHO05D006312 6.3e-09 65.1 72 50.0
Sabra03G0019800 Salix brachista HOM05D005167 ORTHO05D006312 8.2e-09 64.7 284 23.6
HanXRQChr12g0378911 Helianthus annuus HOM05D005167 ORTHO05D006312 2.2e-06 56.6 78 35.9


User provided reference genes

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