Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g31946 Brassica carinata HOM05D005167 ORTHO05D006312 6.9e-87 323.9 164 100.0
BcaB03g16877 Brassica carinata HOM05D005167 ORTHO05D006312 1.6e-62 243.0 265 55.8
A03p66890 Brassica napus HOM05D005167 ORTHO05D006312 3.6e-59 231.9 257 55.3
BraA01t02792Z Brassica rapa HOM05D005167 ORTHO05D006312 3.6e-59 231.9 257 55.3
C07p02160 Brassica napus HOM05D005167 ORTHO05D006312 6.1e-59 231.1 257 54.9
BolC7t40625H Brassica oleracea HOM05D005167 ORTHO05D006312 6.1e-59 231.1 257 54.9
SpUn0422_0010 Schrenkiella parvula HOM05D005167 ORTHO05D006312 9.1e-55 217.2 260 51.5
BcaC06g31947 Brassica carinata HOM05D005167 ORTHO05D006312 8.6e-53 210.7 171 69.6
Thhalv10028036m.g Eutrema salsugineum HOM05D005167 ORTHO05D006312 4.1e-47 191.8 256 47.3
CARHR046110 Cardamine hirsuta HOM05D005167 ORTHO05D006312 9.2e-47 190.7 257 46.3
BcaC06g36613 Brassica carinata HOM05D005167 ORTHO05D006312 6.8e-42 174.5 191 54.5
BcaC08g44461 Brassica carinata HOM05D005167 ORTHO05D006312 9.8e-41 170.6 198 51.0
Carub.0003s3540 Capsella rubella HOM05D005167 ORTHO05D006312 4.9e-40 168.3 259 42.5
A07p01000 Brassica napus HOM05D005167 ORTHO05D006312 4.9e-32 141.7 178 51.1
Atru.chr9.69 Acer truncatum HOM05D005167 ORTHO05D006312 1.1e-26 124.0 236 33.9
Ciclev10030405m.g Citrus clementina HOM05D005167 ORTHO05D006312 3.1e-26 122.5 235 35.3
Lju225A7G63 Lonicera japonica HOM05D005167 ORTHO05D006312 2.7e-22 109.4 220 33.2
ClCG08G000010 Citrullus lanatus HOM05D005167 ORTHO05D006312 3.0e-21 105.9 226 31.4
Sed0010261 Sechium edule HOM05D005167 ORTHO05D006312 3.0e-21 105.9 249 30.1
ClCG04G000020 Citrullus lanatus HOM05D005167 ORTHO05D006312 8.6e-21 104.4 226 31.0
SpUn0005_0090 Schrenkiella parvula HOM05D005167 ORTHO05D006312 8.6e-21 104.4 89 64.0
Cpa.g.sc15.42 Carica papaya HOM05D005167 ORTHO05D006312 2.5e-20 102.8 217 33.6
Nn3g20631 Nelumbo nucifera HOM05D005167 ORTHO05D006312 4.3e-20 102.1 250 30.4
Gohir.A09G002900 Gossypium hirsutum HOM05D005167 ORTHO05D006312 5.6e-20 101.7 223 30.0
Thecc.07G187300 Theobroma cacao HOM05D005167 ORTHO05D006312 1.2e-19 100.5 244 29.9
Gohir.D09G002700 Gossypium hirsutum HOM05D005167 ORTHO05D006312 1.6e-19 100.1 223 29.1
Gorai.006G003300 Gossypium raimondii HOM05D005167 ORTHO05D006312 1.6e-19 100.1 223 29.1
TWI31G1352 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 2.8e-19 99.4 242 30.6
Phvul.L001673 Phaseolus vulgaris HOM05D005167 ORTHO05D006312 4.7e-19 98.6 178 36.5
Oeu000168.1 Olea europaea HOM05D005167 ORTHO05D006312 2.4e-18 96.3 242 28.1
C06p19120 Brassica napus HOM05D005167 ORTHO05D006312 3.1e-18 95.9 55 81.8
BolC6t37111H Brassica oleracea HOM05D005167 ORTHO05D006312 3.1e-18 95.9 55 81.8
HanXRQChr12g0386151 Helianthus annuus HOM05D005167 ORTHO05D006312 5.2e-18 95.1 240 27.9
Lsat_1_v5_gn_8_167100 Lactuca sativa HOM05D005167 ORTHO05D006312 6.8e-18 94.7 250 27.6
Migut.N00879 Erythranthe guttata HOM05D005167 ORTHO05D006312 2.6e-17 92.8 252 27.8
GSVIVG01029417001 Vitis vinifera HOM05D005167 ORTHO05D006312 5.8e-17 91.7 192 32.3
Actinidia12290 Actinidia chinensis HOM05D005167 ORTHO05D006312 9.9e-17 90.9 264 28.0
CiPaw.15G107300 Carya illinoinensis HOM05D005167 ORTHO05D006312 2.9e-16 89.4 223 28.7
Prupe.4G287800 Prunus persica HOM05D005167 ORTHO05D006312 3.8e-16 89.0 223 30.5
PGSC0003DMG400014526 Solanum tuberosum HOM05D005167 ORTHO05D006312 4.9e-16 88.6 206 32.5
Duzib116G0260 Durio zibethinus HOM05D005167 ORTHO05D006312 3.2e-15 85.9 206 29.6
Aqoxy4G01544 Aquilegia oxysepala HOM05D005167 ORTHO05D006312 4.2e-15 85.5 210 29.5
CAN.G989.3 Capsicum annuum HOM05D005167 ORTHO05D006312 5.4e-15 85.1 186 31.7
Dinv01746 Davidia involucrata HOM05D005167 ORTHO05D006312 5.4e-15 85.1 310 25.2
CiPaw.15G107200 Carya illinoinensis HOM05D005167 ORTHO05D006312 7.1e-15 84.7 223 28.3
CANSAT64G2797 Cannabis sativa HOM05D005167 ORTHO05D006312 1.2e-14 84.0 232 28.9
Glyma.13G026000 Glycine max HOM05D005167 ORTHO05D006312 2.1e-14 83.2 194 34.0
MELO3C034515.2 Cucumis melo HOM05D005167 ORTHO05D006312 4.6e-14 82.0 270 25.2
Thhalv10028065m.g Eutrema salsugineum HOM05D005167 ORTHO05D006312 4.6e-14 82.0 55 70.9
FAN19G3173 Fragaria x ananassa HOM05D005167 ORTHO05D006312 4.6e-14 82.0 240 27.5
TAR629G0123 Trochodendron aralioides HOM05D005167 ORTHO05D006312 1.0e-13 80.9 197 27.9
Sopen02g001190 Solanum pennellii HOM05D005167 ORTHO05D006312 2.3e-13 79.7 168 33.9
SGA_v2.0_scaffold401G50971 Striga asiatica HOM05D005167 ORTHO05D006312 5.1e-13 78.6 323 22.0
PSO170G3824 Papaver somniferum HOM05D005167 ORTHO05D006312 8.7e-13 77.8 289 23.5
Eucgr.B01586 Eucalyptus grandis HOM05D005167 ORTHO05D006312 1.5e-12 77.0 175 30.3
Gorai.001G263800 Gossypium raimondii HOM05D005167 ORTHO05D006312 1.5e-12 77.0 193 29.5
HanXRQChr15g0488451 Helianthus annuus HOM05D005167 ORTHO05D006312 1.5e-12 77.0 264 23.9
Cc00_g01280 Coffea canephora HOM05D005167 ORTHO05D006312 1.9e-12 76.6 192 28.1
Nn5g27095 Nelumbo nucifera HOM05D005167 ORTHO05D006312 2.5e-12 76.3 56 58.9
Nitab4.5_0001246g0010 Nicotiana tabacum HOM05D005167 ORTHO05D006312 2.5e-12 76.3 181 29.3
TWI15G0790 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 3.3e-12 75.9 55 65.5
ECA234G3362 Erigeron canadensis HOM05D005167 ORTHO05D006312 4.3e-12 75.5 182 30.8
MD00G1096100 Malus domestica HOM05D005167 ORTHO05D006312 5.6e-12 75.1 236 27.1
DCAR_029460 Daucus carota HOM05D005167 ORTHO05D006312 7.3e-12 74.7 67 52.2
Nitab4.5_0007926g0020 Nicotiana tabacum HOM05D005167 ORTHO05D006312 7.3e-12 74.7 181 29.3
RcHm_v2.0_Chr3g0496761 Rosa chinensis HOM05D005167 ORTHO05D006312 7.3e-12 74.7 111 36.9
Gohir.D07G228750 Gossypium hirsutum HOM05D005167 ORTHO05D006312 9.6e-12 74.3 211 27.0
Lju225C0G3 Lonicera japonica HOM05D005167 ORTHO05D006312 9.6e-12 74.3 95 40.0
Manes.18G143000 Manihot esculenta HOM05D005167 ORTHO05D006312 9.6e-12 74.3 255 25.9
ATR0782G113 Amborella trichopoda HOM05D005167 ORTHO05D006312 1.2e-11 73.9 67 56.7
Nitab4.5_0005690g0020 Nicotiana tabacum HOM05D005167 ORTHO05D006312 1.2e-11 73.9 181 29.8
Os07g0657600 Oryza sativa ssp. japonica HOM05D005167 ORTHO05D006312 1.2e-11 73.9 67 55.2
HPP92_025056 Vanilla planifolia HOM05D005167 ORTHO05D006312 1.6e-11 73.6 283 21.9
Cc02_g36800 Coffea canephora HOM05D005167 ORTHO05D006312 2.1e-11 73.2 56 58.9
Dinv24548 Davidia involucrata HOM05D000457 ORTHO05D000560 2.1e-11 73.2 67 50.7
SalBow3G4053 Salvia bowleyana HOM05D005167 ORTHO05D006312 2.1e-11 73.2 313 22.7
Manes.18G143300 Manihot esculenta HOM05D005167 ORTHO05D006312 2.8e-11 72.8 206 27.7
Ah.02g128610 Amaranthus hybridus HOM05D005167 ORTHO05D006312 3.6e-11 72.4 67 53.7
Hma1.2p1_0052F.1_g030120 Hydrangea macrophylla HOM05D005167 ORTHO05D006312 3.6e-11 72.4 67 50.7
Sc07g0003350 Simmondsia chinensis HOM05D005167 ORTHO05D006312 3.6e-11 72.4 285 22.5
Sc07g0003360 Simmondsia chinensis HOM05D005167 ORTHO05D006312 3.6e-11 72.4 285 22.5
FvH4_1g27954 Fragaria vesca HOM05D005167 ORTHO05D006312 6.2e-11 71.6 114 35.1
AUR62024866 Chenopodium quinoa HOM05D005167 ORTHO05D006312 1.1e-10 70.9 67 52.2
FAN26G1264 Fragaria x ananassa HOM05D005167 ORTHO05D006312 1.1e-10 70.9 114 35.1
Nitab4.5_0004176g0010 Nicotiana tabacum HOM05D005167 ORTHO05D006312 1.4e-10 70.5 91 40.7
QL01p052835 Quercus lobata HOM05D005167 ORTHO05D006312 1.4e-10 70.5 48 68.8
EL10Ac6g13938 Beta vulgaris HOM05D005167 ORTHO05D006312 1.8e-10 70.1 67 50.7
QL93p1868_0064 Quercus lobata HOM05D005167 ORTHO05D006312 1.8e-10 70.1 48 68.8
Sopen01g045080 Solanum pennellii HOM05D005167 ORTHO05D006312 1.8e-10 70.1 67 49.3
PGSC0003DMG400018222 Solanum tuberosum HOM05D005167 ORTHO05D006312 1.8e-10 70.1 101 34.7
SGA_v2.0_scaffold150G36624 Striga asiatica HOM05D005167 ORTHO05D006312 1.8e-10 70.1 223 24.2
arahy.Tifrunner.gnm1.ann1.JG47X3 Arachis hypogaea HOM05D005167 ORTHO05D006312 2.4e-10 69.7 100 37.0
arahy.Tifrunner.gnm1.ann1.T4BBUF Arachis hypogaea HOM05D005167 ORTHO05D006312 2.4e-10 69.7 100 37.0
Glyma.09G018700 Glycine max HOM05D005167 ORTHO05D006312 2.4e-10 69.7 130 30.0
Lj9C241G5 Lonicera japonica HOM05D005167 ORTHO05D006312 2.4e-10 69.7 67 49.3
Lj6g0014124 Lotus japonicus HOM05D005167 ORTHO05D006312 2.4e-10 69.7 100 36.0
Hund15261 Selenicereus undatus HOM05D005167 ORTHO05D006312 2.4e-10 69.7 67 50.7
VMungo0540G0564 Vigna mungo HOM05D005167 ORTHO05D006312 2.4e-10 69.7 100 36.0
CAN.G1379.23 Capsicum annuum HOM05D005167 ORTHO05D006312 3.1e-10 69.3 67 49.3
CDE02G1408 Ceratophyllum demersum HOM05D005167 ORTHO05D006312 3.1e-10 69.3 48 66.7
CiPaw.09G096800 Carya illinoinensis HOM05D005167 ORTHO05D006312 4.0e-10 68.9 100 37.0
ECA248G1565 Erigeron canadensis HOM05D005167 ORTHO05D006312 5.2e-10 68.6 99 39.4
Peaxi162Scf00194g00934 Petunia axillaris HOM05D005167 ORTHO05D006312 5.2e-10 68.6 100 34.0
Solyc01g102670.3 Solanum lycopersicum HOM05D005167 ORTHO05D006312 5.2e-10 68.6 67 49.3
CDE02G4394 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 6.9e-10 68.2 103 35.0
Phvul.006G133500 Phaseolus vulgaris HOM05D005167 ORTHO05D006312 1.2e-09 67.4 100 36.0
Nitab4.5_0001085g0040 Nicotiana tabacum HOM05D005167 ORTHO05D006312 2.0e-09 66.6 101 39.6
QL02p104239 Quercus lobata HOM05D005167 ORTHO05D006312 2.0e-09 66.6 103 34.0
QL93p1868_0059 Quercus lobata HOM05D005167 ORTHO05D006312 2.6e-09 66.2 104 34.6
THA.LOC104809040 Tarenaya hassleriana HOM05D005167 ORTHO05D006312 2.6e-09 66.2 100 35.0
Ciclev10001110m.g Citrus clementina HOM05D005167 ORTHO05D006312 7.6e-09 64.7 100 35.0
vmacro19812 Vaccinium macrocarpon HOM05D005167 ORTHO05D006312 7.6e-09 64.7 100 33.0
Atru.chr6.56 Acer truncatum HOM05D005167 ORTHO05D006312 2.2e-08 63.2 100 33.0
PGR042G3689 Punica granatum HOM05D005167 ORTHO05D006312 2.9e-08 62.8 100 33.0
Potri.003G046300 Populus trichocarpa HOM05D005167 ORTHO05D006312 3.8e-08 62.4 105 31.4
Haze_09951 Corylus avellana HOM05D005167 ORTHO05D006312 4.9e-08 62.0 100 34.0
Eucgr.G00036 Eucalyptus grandis HOM05D005167 ORTHO05D006312 4.9e-08 62.0 100 33.0
Thecc.06G025200 Theobroma cacao HOM05D005167 ORTHO05D006312 6.4e-08 61.6 150 30.7
Gorai.009G128100 Gossypium raimondii HOM05D005167 ORTHO05D006312 8.4e-08 61.2 100 34.0
Gohir.A05G123200 Gossypium hirsutum HOM05D005167 ORTHO05D006312 1.1e-07 60.8 100 34.0
Atru.chr9.63 Acer truncatum HOM05D005167 ORTHO05D006312 1.4e-07 60.5 83 34.9
Duzib160G0520 Durio zibethinus HOM05D005167 ORTHO05D006312 1.4e-07 60.5 101 35.6
Oeu000169.3 Olea europaea HOM05D005167 ORTHO05D006312 1.4e-07 60.5 73 41.1
Rhsim05G0120900 Rhododendron simsii HOM05D005167 ORTHO05D006312 1.4e-07 60.5 129 27.1
Atru.chr6.45 Acer truncatum HOM05D005167 ORTHO05D006312 2.4e-07 59.7 61 49.2
Manes.06G015900 Manihot esculenta HOM05D005167 ORTHO05D006312 2.4e-07 59.7 105 30.5
TWI23G0323 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 7.1e-07 58.2 70 38.6
Gohir.D05G124100 Gossypium hirsutum HOM05D005167 ORTHO05D006312 9.3e-07 57.8 138 29.7
QL93p0255_0001 Quercus lobata HOM05D005167 ORTHO05D006312 1.6e-06 57.0 73 37.0
QL01p053234 Quercus lobata HOM05D005167 ORTHO05D006312 2.1e-06 56.6 73 37.0
HanXRQChr12g0378911 Helianthus annuus HOM05D005167 ORTHO05D006312 2.7e-06 56.2 133 27.1
CANSAT01G2096 Cannabis sativa HOM05D005167 ORTHO05D006312 4.6e-06 55.5 66 37.9
Sabra03G0019800 Salix brachista HOM05D005167 ORTHO05D006312 6.0e-06 55.1 64 45.3


User provided reference genes

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