Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g31931 Brassica carinata HOM05D004424 ORTHO05D026959 3.2e-53 211.5 104 100.0
BcaC08g44470 Brassica carinata HOM05D004424 ORTHO05D005476 3.5e-28 128.3 66 93.9
A07p20340 Brassica napus HOM05D004424 ORTHO05D005476 3.5e-28 128.3 66 93.9
C06p19220 Brassica napus HOM05D004424 ORTHO05D005476 3.5e-28 128.3 66 93.9
BolC6t37118H Brassica oleracea HOM05D004424 ORTHO05D005476 3.5e-28 128.3 66 93.9
BraA07t29735Z Brassica rapa HOM05D004424 ORTHO05D005476 3.5e-28 128.3 66 93.9
BcaB02g07939 Brassica carinata HOM05D004424 ORTHO05D005476 7.9e-28 127.1 62 98.4
Aa31LG9G1010 Aethionema arabicum HOM05D004424 ORTHO05D005476 3.9e-27 124.8 63 92.1
Carub.0007s3488 Capsella rubella HOM05D004424 ORTHO05D005476 8.7e-27 123.6 61 95.1
Thhalv10027824m.g Eutrema salsugineum HOM05D004424 ORTHO05D005476 8.7e-27 123.6 61 95.1
CARHR261350 Cardamine hirsuta HOM05D004424 ORTHO05D005476 1.1e-26 123.2 59 100.0
THA.LOC104825312 Tarenaya hassleriana HOM05D004424 ORTHO05D005476 4.3e-26 121.3 60 95.0
AT5G40610 Arabidopsis thaliana HOM05D004424 ORTHO05D005476 1.3e-25 119.8 61 93.4
C04p47410 Brassica napus HOM05D004424 ORTHO05D005476 2.1e-25 119.0 65 89.2
BolC4t26343H Brassica oleracea HOM05D004424 ORTHO05D005476 2.1e-25 119.0 65 89.2
Sp7g01260 Schrenkiella parvula HOM05D004424 ORTHO05D005476 2.8e-25 118.6 59 93.2
AL7G49190 Arabidopsis lyrata HOM05D004424 ORTHO05D005476 4.8e-25 117.9 57 98.2
A04p13620 Brassica napus HOM05D004424 ORTHO05D005476 6.2e-25 117.5 65 87.7
BraA04t17023Z Brassica rapa HOM05D004424 ORTHO05D005476 6.2e-25 117.5 65 87.7
PGR083G2343 Punica granatum HOM05D004424 ORTHO05D005476 1.1e-24 116.7 65 86.2
THA.LOC104805357 Tarenaya hassleriana HOM05D004424 ORTHO05D005476 1.1e-24 116.7 63 87.3
Lj7A603T68 Lonicera japonica HOM05D004424 ORTHO05D005476 2.4e-24 115.5 63 85.7
COL.COLO4_29204 Corchorus olitorius HOM05D004424 ORTHO05D005476 2.0e-23 112.5 63 84.1
Manes.15G153800 Manihot esculenta HOM05D004424 ORTHO05D005476 7.6e-23 110.5 56 92.9
BcaB06g27537 Brassica carinata HOM05D004424 ORTHO05D005476 1.7e-22 109.4 59 88.1
RhsimUnG0005500 Rhododendron simsii HOM05D004424 ORTHO05D005476 1.7e-22 109.4 59 88.1
RhsimUnG0088000 Rhododendron simsii HOM05D004424 ORTHO05D005476 1.7e-22 109.4 59 88.1
Thecc.04G022600 Theobroma cacao HOM05D004424 ORTHO05D005476 2.2e-22 109.0 57 89.5
TAR629G0173 Trochodendron aralioides HOM05D004424 ORTHO05D005476 2.2e-22 109.0 58 87.9
Actinidia05960 Actinidia chinensis HOM05D004424 ORTHO05D005476 2.9e-22 108.6 57 89.5
Actinidia36142 Actinidia chinensis HOM05D004424 ORTHO05D005476 2.9e-22 108.6 57 89.5
Cpa.g.sc862.6 Carica papaya HOM05D004424 ORTHO05D026959 2.9e-22 108.6 61 83.6
TWI36G0116 Tripterygium wilfordii HOM05D004424 ORTHO05D005476 2.9e-22 108.6 57 91.2
Eucgr.J02265 Eucalyptus grandis HOM05D004424 ORTHO05D005476 3.8e-22 108.2 57 87.7
Hma1.2p1_0818F.1_g223410 Hydrangea macrophylla HOM05D004424 ORTHO05D005476 3.8e-22 108.2 57 89.5
TWI56G0533 Tripterygium wilfordii HOM05D004424 ORTHO05D005476 3.8e-22 108.2 57 91.2
vmacro05893 Vaccinium macrocarpon HOM05D004424 ORTHO05D005476 5.0e-22 107.8 57 89.5
CANSAT64G1206 Cannabis sativa HOM05D004424 ORTHO05D005476 6.5e-22 107.5 57 86.0
PSO478G4959 Papaver somniferum HOM05D004424 ORTHO05D005476 6.5e-22 107.5 57 86.0
Phvul.008G160800 Phaseolus vulgaris HOM05D004424 ORTHO05D005476 6.5e-22 107.5 55 89.1
Dinv33406 Davidia involucrata HOM05D004424 ORTHO05D005476 1.1e-21 106.7 57 87.7
VMungo0464G1386 Vigna mungo HOM05D004424 ORTHO05D005476 1.1e-21 106.7 57 82.5
Ciclev10015567m.g Citrus clementina HOM05D004424 ORTHO05D005476 1.4e-21 106.3 57 86.0
Cc07_g00150 Coffea canephora HOM05D004424 ORTHO05D005476 1.4e-21 106.3 62 80.6
Sed0023807 Sechium edule HOM05D004424 ORTHO05D005476 1.4e-21 106.3 57 86.0
Gohir.A09G031100 Gossypium hirsutum HOM05D004424 ORTHO05D005476 1.9e-21 105.9 57 89.5
Gorai.006G036200 Gossypium raimondii HOM05D004424 ORTHO05D005476 1.9e-21 105.9 57 89.5
TPR.G1131 Trifolium pratense HOM05D004424 ORTHO05D005476 1.9e-21 105.9 56 85.7
Duzib264G0567 Durio zibethinus HOM05D004424 ORTHO05D005476 2.5e-21 105.5 57 89.5
Duzib264G0829 Durio zibethinus HOM05D004424 ORTHO05D005476 2.5e-21 105.5 57 89.5
MD17G1020500 Malus domestica HOM05D004424 ORTHO05D005476 2.5e-21 105.5 57 86.0
Atru.chr6.2455 Acer truncatum HOM05D004424 ORTHO05D005476 3.2e-21 105.1 57 84.2
RcHm_v2.0_Chr2g0173621 Rosa chinensis HOM05D004424 ORTHO05D005476 3.2e-21 105.1 58 82.8
Aqoxy3G01375 Aquilegia oxysepala HOM05D004424 ORTHO05D005476 4.2e-21 104.8 64 79.7
CSS0006863 Camellia sinensis var. sinensis HOM05D004424 ORTHO05D005476 4.2e-21 104.8 62 82.3
CSS0021502 Camellia sinensis var. sinensis HOM05D004424 ORTHO05D005476 4.2e-21 104.8 62 82.3
FAN02G2704 Fragaria x ananassa HOM05D004424 ORTHO05D005476 4.2e-21 104.8 57 84.2
FAN09G1365 Fragaria x ananassa HOM05D004424 ORTHO05D005476 4.2e-21 104.8 57 84.2
FAN14G4625 Fragaria x ananassa HOM05D004424 ORTHO05D005476 4.2e-21 104.8 57 84.2
Lj2g0008128 Lotus japonicus HOM05D004424 ORTHO05D005476 4.2e-21 104.8 57 82.5
PSO578G0012 Papaver somniferum HOM05D004424 ORTHO05D005476 4.2e-21 104.8 57 84.2
QL02p073533 Quercus lobata HOM05D004424 ORTHO05D005476 4.2e-21 104.8 57 82.5
CSS0022745 Camellia sinensis var. sinensis HOM05D004424 ORTHO05D005476 5.5e-21 104.4 57 84.2
CiPaw.04G031400 Carya illinoinensis HOM05D004424 ORTHO05D026959 5.5e-21 104.4 57 86.0
Potri.017G070900 Populus trichocarpa HOM05D004424 ORTHO05D005476 5.5e-21 104.4 56 87.5
DCAR_011275 Daucus carota HOM05D004424 ORTHO05D005476 7.2e-21 104.0 57 86.0
MD09G1020100 Malus domestica HOM05D004424 ORTHO05D005476 7.2e-21 104.0 57 84.2
SGA_v2.0_scaffold18G08249 Striga asiatica HOM05D004424 ORTHO05D005476 7.2e-21 104.0 58 84.5
ECA232G4437 Erigeron canadensis HOM05D004424 ORTHO05D005476 9.3e-21 103.6 57 82.5
FAN05G4460 Fragaria x ananassa HOM05D004424 ORTHO05D005476 9.3e-21 103.6 57 82.5
Glyma.19G079400 Glycine max HOM05D004424 ORTHO05D005476 9.3e-21 103.6 55 87.3
PSO063G2103 Papaver somniferum HOM05D004424 ORTHO05D005476 9.3e-21 103.6 61 78.7
PGSC0003DMG400006965 Solanum tuberosum HOM05D004424 ORTHO05D005476 9.3e-21 103.6 57 84.2
TPR.G21634 Trifolium pratense HOM05D004424 ORTHO05D005476 9.3e-21 103.6 57 80.7
Gohir.D09G031300 Gossypium hirsutum HOM05D004424 ORTHO05D005476 1.2e-20 103.2 57 87.7
Lsat_1_v5_gn_4_184601 Lactuca sativa HOM05D004424 ORTHO05D005476 1.2e-20 103.2 57 82.5
Lju41A44T88 Lonicera japonica HOM05D004424 ORTHO05D005476 1.2e-20 103.2 57 82.5
GSVIVG01003989001 Vitis vinifera HOM05D004424 ORTHO05D005476 1.2e-20 103.2 57 82.5
Cfa007312 Carpinus fangiana HOM05D004424 ORTHO05D005476 1.6e-20 102.8 57 80.7
Ca_05240_v3 Cicer arietinum L. HOM05D004424 ORTHO05D005476 1.6e-20 102.8 56 83.9
Migut.K01420 Erythranthe guttata HOM05D004424 ORTHO05D005476 1.6e-20 102.8 57 86.0
Nitab4.5_0000040g0610 Nicotiana tabacum HOM05D004424 ORTHO05D005476 1.6e-20 102.8 57 84.2
Prupe.3G296200 Prunus persica HOM05D004424 ORTHO05D005476 1.6e-20 102.8 57 82.5
Sopen02g017050 Solanum pennellii HOM05D004424 ORTHO05D005476 1.6e-20 102.8 57 82.5
Aqoxy3G01300 Aquilegia oxysepala HOM05D004424 ORTHO05D005476 2.1e-20 102.4 57 80.7
CAN.G1057.16 Capsicum annuum HOM05D004424 ORTHO05D005476 2.1e-20 102.4 57 84.2
Glyma.19G053500 Glycine max HOM05D004424 ORTHO05D005476 2.1e-20 102.4 65 73.8
MD17G1020700 Malus domestica HOM05D004424 ORTHO05D005476 2.1e-20 102.4 57 84.2
Psat1g081600 Pisum sativum HOM05D004424 ORTHO05D005476 2.1e-20 102.4 58 75.9
Solyc02g067930.3 Solanum lycopersicum HOM05D004424 ORTHO05D005476 2.1e-20 102.4 57 82.5
Ca_04390_v3 Cicer arietinum L. HOM05D004424 ORTHO05D005476 2.7e-20 102.1 57 78.9
FAN09G1353 Fragaria x ananassa HOM05D004424 ORTHO05D005476 2.7e-20 102.1 57 82.5
HanXRQChr09g0255531 Helianthus annuus HOM05D004424 ORTHO05D005476 2.7e-20 102.1 57 80.7
Lj1g0018666 Lotus japonicus HOM05D004424 ORTHO05D005476 2.7e-20 102.1 56 80.4
Phvul.004G059500 Phaseolus vulgaris HOM05D004424 ORTHO05D005476 2.7e-20 102.1 57 80.7
arahy.Tifrunner.gnm1.ann1.E7CAJ8 Arachis hypogaea HOM05D004424 ORTHO05D005476 3.5e-20 101.7 58 81.0
arahy.Tifrunner.gnm1.ann1.SWZ6KM Arachis hypogaea HOM05D004424 ORTHO05D005476 3.5e-20 101.7 58 81.0
MSTRG.24051 Avicennia marina HOM05D004424 ORTHO05D005476 3.5e-20 101.7 58 82.8
ClCG09G019460 Citrullus lanatus HOM05D004424 ORTHO05D005476 3.5e-20 101.7 57 82.5
Haze_14780 Corylus avellana HOM05D004424 ORTHO05D005476 3.5e-20 101.7 57 80.7
Glyma.05G114350 Glycine max HOM05D004424 ORTHO05D005476 3.5e-20 101.7 68 70.6
Nitab4.5_0004496g0010 Nicotiana tabacum HOM05D004424 ORTHO05D005476 3.5e-20 101.7 57 84.2
Medtr7g032630 Medicago truncatula HOM05D004424 ORTHO05D005476 4.6e-20 101.3 56 80.4
Oeu054644.1 Olea europaea HOM05D004424 ORTHO05D005476 6.1e-20 100.9 58 81.0
HPP92_021439 Vanilla planifolia HOM05D004424 ORTHO05D005476 7.9e-20 100.5 55 85.5
Medtr6g021915 Medicago truncatula HOM05D004424 ORTHO05D005476 1.0e-19 100.1 57 75.4
ATR0824G013 Amborella trichopoda HOM05D004424 ORTHO05D005476 1.3e-19 99.8 61 73.8
CsaV3_5G026900 Cucumis sativus L. HOM05D004424 ORTHO05D005476 1.3e-19 99.8 57 82.5
DCAR_021744 Daucus carota HOM05D004424 ORTHO05D005476 1.3e-19 99.8 55 81.8
PSO478G3400 Papaver somniferum HOM05D004424 ORTHO05D005476 1.3e-19 99.8 57 78.9
MELO3C021604.2 Cucumis melo HOM05D004424 ORTHO05D005476 1.8e-19 99.4 57 80.7
HPP92_027100 Vanilla planifolia HOM05D004424 ORTHO05D005476 1.8e-19 99.4 55 83.6
Lalb_Chr22g0360631 Lupinus albus HOM05D004424 ORTHO05D005476 3.0e-19 98.6 58 77.6
Os01g0971600 Oryza sativa ssp. japonica HOM05D004424 ORTHO05D005476 3.9e-19 98.2 61 70.5
CiPaw.03G047600 Carya illinoinensis HOM05D004424 ORTHO05D005476 1.1e-18 96.7 57 78.9
Zm00001eb139850 Zea mays HOM05D004424 ORTHO05D005476 1.1e-18 96.7 61 70.5
Lalb_Chr24g0403451 Lupinus albus HOM05D004424 ORTHO05D005476 1.9e-18 95.9 74 64.9
arahy.Tifrunner.gnm1.ann1.75451B Arachis hypogaea HOM05D004424 ORTHO05D005476 2.5e-18 95.5 57 73.7
Gorai.012G066600 Gossypium raimondii HOM05D004424 ORTHO05D005476 2.5e-18 95.5 57 75.4
Psat3g172960 Pisum sativum HOM05D004424 ORTHO05D005476 2.5e-18 95.5 56 76.8
Ah.04g162770 Amaranthus hybridus HOM05D004424 ORTHO05D005476 9.7e-18 93.6 63 66.7
AUR62035520 Chenopodium quinoa HOM05D004424 ORTHO05D005476 9.7e-18 93.6 58 72.4
AUR62041297 Chenopodium quinoa HOM05D004424 ORTHO05D005476 9.7e-18 93.6 58 72.4
Peaxi162Scf00080g01518 Petunia axillaris HOM05D004424 ORTHO05D005476 9.7e-18 93.6 51 84.3
Pp3c15_11110 Physcomitrium patens HOM05D004424 ORTHO05D005476 2.8e-17 92.0 58 70.7
Hma1.2p1_0279F.1_g111990 Hydrangea macrophylla HOM05D004424 ORTHO05D005476 8.2e-17 90.5 50 86.0
SEGI_10400 Sequoiadendron giganteum HOM05D004424 ORTHO05D005476 8.2e-17 90.5 57 71.9
Hund06842 Selenicereus undatus HOM05D004424 ORTHO05D005476 1.4e-16 89.7 58 72.4
Mapoly0218s0007 Marchantia polymorpha HOM05D004424 ORTHO05D005476 2.6e-15 85.5 54 72.2
Sc16g0003770 Simmondsia chinensis HOM05D004424 ORTHO05D005476 5.9e-15 84.3 55 69.1
SMO244G0041 Selaginella moellendorffii HOM05D004424 ORTHO05D005476 2.2e-14 82.4 55 69.1
Oeu050453.1 Olea europaea HOM05D004424 ORTHO05D005476 7.2e-13 77.4 58 70.7
EL10Ac4g08826 Beta vulgaris HOM05D004424 ORTHO05D005476 4.3e-10 68.2 51 62.7
RhsimUnG0005600 Rhododendron simsii HOM05D004424 ORTHO05D005476 1.2e-07 60.1 31 93.5
Cfa026705 Carpinus fangiana HOM05D004424 ORTHO05D005476 4.5e-07 58.2 68 45.6
Haze_27221 Corylus avellana HOM05D004424 ORTHO05D005476 1.3e-06 56.6 55 49.1
BraA09t40978Z Brassica rapa HOM05D013468 ORTHO05D020136 3.8e-06 55.1 34 67.6


User provided reference genes

Program Settings