Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g31772 Brassica carinata HOM05D001340 ORTHO05D005342 1.2e-53 213.0 113 100.0
BcaC02g10729 Brassica carinata HOM05D001340 ORTHO05D005342 9.1e-38 160.2 105 83.8
BolC4t24084H Brassica oleracea HOM05D001340 ORTHO05D005342 9.1e-38 160.2 105 83.8
BraA03t15714Z Brassica rapa HOM05D001340 ORTHO05D005342 9.1e-38 160.2 105 83.8
C04p27080 Brassica napus HOM05D001340 ORTHO05D005342 1.6e-37 159.5 104 84.6
Sp2g06370 Schrenkiella parvula HOM05D001340 ORTHO05D005342 5.0e-36 154.5 110 79.1
A03p66580 Brassica napus HOM05D001340 ORTHO05D005342 1.8e-33 146.0 131 67.2
BcaC09g49556 Brassica carinata HOM05D001340 ORTHO05D005342 2.0e-32 142.5 106 78.3
A01p27480 Brassica napus HOM05D001340 ORTHO05D005342 2.0e-32 142.5 106 78.3
C01p35320 Brassica napus HOM05D001340 ORTHO05D005342 2.0e-32 142.5 106 78.3
BolC1t03489H Brassica oleracea HOM05D001340 ORTHO05D005342 2.0e-32 142.5 106 78.3
BraA01t02887Z Brassica rapa HOM05D001340 ORTHO05D005342 2.0e-32 142.5 106 78.3
Carub.0002s0770 Capsella rubella HOM05D001340 ORTHO05D005342 7.5e-32 140.6 109 70.6
Thhalv10023436m.g Eutrema salsugineum HOM05D001340 ORTHO05D005342 1.1e-30 136.7 110 71.8
AT1G56440 Arabidopsis thaliana HOM05D001340 ORTHO05D005342 2.4e-30 135.6 109 69.7
AL1G66140 Arabidopsis lyrata HOM05D001340 ORTHO05D005342 5.9e-29 131.0 109 67.9
Aa31LG2G11470 Aethionema arabicum HOM05D001340 ORTHO05D005342 3.3e-27 125.2 109 66.1
CARHR055170 Cardamine hirsuta HOM05D001340 ORTHO05D005342 1.8e-25 119.4 111 63.1
THA.LOC104816892 Tarenaya hassleriana HOM05D001340 ORTHO05D005342 1.7e-23 112.8 105 61.9
COL.COLO4_05548 Corchorus olitorius HOM05D001340 ORTHO05D005342 4.1e-22 108.2 121 57.9
Atru.chr2.201 Acer truncatum HOM05D001340 ORTHO05D005342 1.0e-20 103.6 112 58.0
PSO357G0240 Papaver somniferum HOM05D001340 ORTHO05D005342 1.3e-20 103.2 109 56.9
Prupe.6G312500 Prunus persica HOM05D001340 ORTHO05D002318 6.6e-20 100.9 109 56.0
Ciclev10003914m.g Citrus clementina HOM05D001340 ORTHO05D002318 8.6e-20 100.5 112 57.1
CANSAT54G2301 Cannabis sativa HOM05D001340 ORTHO05D005342 1.5e-19 99.8 128 53.1
Haze_04058 Corylus avellana HOM05D001340 ORTHO05D005342 1.5e-19 99.8 118 55.9
PSO170G0183 Papaver somniferum HOM05D001340 ORTHO05D005342 1.9e-19 99.4 109 56.0
QL03p013901 Quercus lobata HOM05D001340 ORTHO05D005342 1.9e-19 99.4 117 55.6
Cfa006706 Carpinus fangiana HOM05D001340 ORTHO05D002318 3.3e-19 98.6 118 55.1
Cpa.g.sc48.165 Carica papaya HOM05D001340 ORTHO05D005342 5.6e-19 97.8 119 52.9
Nitab4.5_0007698g0020 Nicotiana tabacum HOM05D001340 ORTHO05D005342 9.5e-19 97.1 131 48.1
BcaB04g20162 Brassica carinata HOM05D001340 ORTHO05D005342 1.6e-18 96.3 105 59.0
Manes.09G177200 Manihot esculenta HOM05D001340 ORTHO05D005342 1.6e-18 96.3 118 53.4
Nitab4.5_0000155g0120 Nicotiana tabacum HOM05D001340 ORTHO05D005342 1.6e-18 96.3 131 48.9
MD12G1205500 Malus domestica HOM05D001340 ORTHO05D005342 2.1e-18 95.9 100 59.0
Peaxi162Scf00595g00424 Petunia axillaris HOM05D001340 ORTHO05D005342 2.1e-18 95.9 127 51.2
Sc09g0002630 Simmondsia chinensis HOM05D001340 ORTHO05D005342 2.1e-18 95.9 123 49.6
FvH4_6g07471 Fragaria vesca HOM05D001340 ORTHO05D005342 3.6e-18 95.1 105 55.2
RcHm_v2.0_Chr3g0457141 Rosa chinensis HOM05D001340 ORTHO05D005342 4.7e-18 94.7 105 56.2
SGA_v2.0_scaffold4G01971 Striga asiatica HOM05D001340 ORTHO05D005342 4.7e-18 94.7 130 49.2
Gohir.A11G273700 Gossypium hirsutum HOM05D001340 ORTHO05D005342 8.0e-18 94.0 125 52.8
Gorai.007G306700 Gossypium raimondii HOM05D001340 ORTHO05D005342 8.0e-18 94.0 125 52.8
CiPaw.08G155200 Carya illinoinensis HOM05D001340 ORTHO05D005342 1.1e-17 93.6 107 55.1
AUR62006743 Chenopodium quinoa HOM05D001340 ORTHO05D005342 1.4e-17 93.2 123 48.8
Gohir.D11G283800 Gossypium hirsutum HOM05D001340 ORTHO05D005342 1.4e-17 93.2 123 53.7
PGR083G1716 Punica granatum HOM05D001340 ORTHO05D005342 1.8e-17 92.8 125 48.0
Potri.005G014100 Populus trichocarpa HOM05D001340 ORTHO05D005342 3.1e-17 92.0 118 52.5
Eucgr.L00263 Eucalyptus grandis HOM05D001340 ORTHO05D005342 5.2e-17 91.3 105 53.3
Potri.013G008400 Populus trichocarpa HOM05D001340 ORTHO05D005342 5.2e-17 91.3 117 53.0
EL10Ac4g09460 Beta vulgaris HOM05D001340 ORTHO05D005342 8.9e-17 90.5 124 47.6
HanXRQChr06g0173421 Helianthus annuus HOM05D001340 ORTHO05D005342 8.9e-17 90.5 153 41.8
TWI36G1129 Tripterygium wilfordii HOM05D001340 ORTHO05D005342 8.9e-17 90.5 113 53.1
CsaV3_2G007140 Cucumis sativus L. HOM05D001340 ORTHO05D005342 1.2e-16 90.1 110 52.7
Sed0025878 Sechium edule HOM05D001340 ORTHO05D005342 1.2e-16 90.1 108 53.7
Solyc10g045540.2 Solanum lycopersicum HOM05D001340 ORTHO05D005342 1.5e-16 89.7 131 44.3
Sabra05G0022300 Salix brachista HOM05D001340 ORTHO05D005342 2.0e-16 89.4 119 51.3
Sopen10g015810 Solanum pennellii HOM05D001340 ORTHO05D005342 2.0e-16 89.4 131 44.3
FAN09G1839 Fragaria x ananassa HOM05D001340 ORTHO05D005342 2.6e-16 89.0 101 55.4
Hma1.2p1_0008F-1.1_g005585 Hydrangea macrophylla HOM05D001340 ORTHO05D005342 3.4e-16 88.6 126 47.6
Thecc.05G323400 Theobroma cacao HOM05D001340 ORTHO05D005342 3.4e-16 88.6 115 52.2
FAN14G4490 Fragaria x ananassa HOM05D001340 ORTHO05D005342 4.4e-16 88.2 100 55.0
Oeu000006.2 Olea europaea HOM05D001340 ORTHO05D005342 4.4e-16 88.2 137 45.3
GSVIVG01031244001 Vitis vinifera HOM05D001340 ORTHO05D002318 4.4e-16 88.2 128 48.4
MSTRG.20379 Avicennia marina HOM05D001340 ORTHO05D005342 5.8e-16 87.8 133 45.9
FAN02G4226 Fragaria x ananassa HOM05D001340 ORTHO05D005342 7.5e-16 87.4 100 52.0
Migut.B00963 Erythranthe guttata HOM05D001340 ORTHO05D005342 1.3e-15 86.7 139 42.4
DCAR_029350 Daucus carota HOM05D001340 ORTHO05D005342 2.9e-15 85.5 126 46.8
Sabra05G0021300 Salix brachista HOM05D001340 ORTHO05D005342 3.7e-15 85.1 117 51.3
Nn4g25585 Nelumbo nucifera HOM05D001340 ORTHO05D005342 4.9e-15 84.7 160 43.1
Rhsim11G0095300 Rhododendron simsii HOM05D001340 ORTHO05D005342 6.4e-15 84.3 128 46.9
Actinidia35520 Actinidia chinensis HOM05D001340 ORTHO05D005342 8.3e-15 84.0 126 49.2
Lj5C332T2 Lonicera japonica HOM05D001340 ORTHO05D005342 8.3e-15 84.0 79 59.5
SalBow7G3618 Salvia bowleyana HOM05D001340 ORTHO05D005342 1.1e-14 83.6 139 46.0
CAN.G1.66 Capsicum annuum HOM05D001340 ORTHO05D005342 2.4e-14 82.4 61 68.9
vmacro01564 Vaccinium macrocarpon HOM05D001340 ORTHO05D005342 1.2e-13 80.1 128 42.2
Dinv30896 Davidia involucrata HOM05D000961 ORTHO05D000841 1.6e-13 79.7 165 38.8
Peaxi162Scf00750g00034 Petunia axillaris HOM05D001340 ORTHO05D005342 1.6e-13 79.7 74 59.5
Zm00001eb354870 Zea mays HOM05D001340 ORTHO05D005342 1.6e-13 79.7 90 53.3
TAR633G1496 Trochodendron aralioides HOM05D000961 ORTHO05D000841 2.0e-13 79.3 82 57.3
TAR706G0001 Trochodendron aralioides HOM05D001340 ORTHO05D005342 2.0e-13 79.3 82 57.3
CSS0014814 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D005342 2.7e-13 79.0 128 43.8
AUR62000388 Chenopodium quinoa HOM05D001340 ORTHO05D005342 3.5e-13 78.6 102 48.0
MBI19_g40070_MAGBIO Magnolia biondii HOM05D001340 ORTHO05D005342 3.5e-13 78.6 143 40.6
Duzib106G0021 Durio zibethinus HOM05D001340 ORTHO05D005342 4.6e-13 78.2 107 49.5
Os05g0129900 Oryza sativa ssp. japonica HOM05D001340 ORTHO05D005342 4.6e-13 78.2 55 72.7
CSS0003239 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D005342 7.8e-13 77.4 128 43.0
Dinv24447 Davidia involucrata HOM05D000961 ORTHO05D000841 1.0e-12 77.0 161 40.4
ECA233G1072 Erigeron canadensis HOM05D004203 ORTHO05D004830 3.0e-12 75.5 117 41.9
Lsat_1_v5_gn_9_121900 Lactuca sativa HOM05D001340 ORTHO05D005342 3.0e-12 75.5 139 41.7
Ah.04g158660 Amaranthus hybridus HOM05D001340 ORTHO05D005342 3.9e-12 75.1 98 50.0
CDE01G0158 Ceratophyllum demersum HOM05D000961 ORTHO05D000841 3.9e-12 75.1 61 63.9
FAN05G0225 Fragaria x ananassa HOM05D001340 ORTHO05D005342 5.0e-12 74.7 93 52.7
Sabra05G0010800 Salix brachista HOM05D001340 ORTHO05D005342 5.0e-12 74.7 100 51.0
TPR.G2618 Trifolium pratense HOM05D001340 ORTHO05D005342 6.6e-12 74.3 130 43.8
Lj5g0009841 Lotus japonicus HOM05D001340 ORTHO05D005342 1.1e-11 73.6 112 47.3
Medtr1g084100 Medicago truncatula HOM05D001340 ORTHO05D005342 1.1e-11 73.6 129 45.0
PSO675G7546 Papaver somniferum HOM05D001340 ORTHO05D005342 1.5e-11 73.2 52 73.1
Lalb_Chr02g0147791 Lupinus albus HOM05D001340 ORTHO05D005342 2.5e-11 72.4 111 43.2
arahy.Tifrunner.gnm1.ann1.6LPS1E Arachis hypogaea HOM05D001340 ORTHO05D005342 5.6e-11 71.2 59 64.4
ClCG02G014870 Citrullus lanatus HOM05D001340 ORTHO05D005342 5.6e-11 71.2 99 49.5
Lj5g0005524 Lotus japonicus HOM05D001340 ORTHO05D005342 5.6e-11 71.2 48 75.0
HPP92_013522 Vanilla planifolia HOM05D001340 ORTHO05D005342 7.3e-11 70.9 60 65.0
Ca_10175_v3 Cicer arietinum L. HOM05D001340 ORTHO05D005342 1.2e-10 70.1 48 75.0
Cc02_g35070 Coffea canephora HOM05D001340 ORTHO05D005342 1.2e-10 70.1 133 40.6
Sabra13G0007100 Salix brachista HOM05D001340 ORTHO05D005342 1.2e-10 70.1 119 42.9
Glyma.06G236676 Glycine max HOM05D000961 ORTHO05D005342 2.8e-10 68.9 70 57.1
Glyma.20G096900 Glycine max HOM05D001340 ORTHO05D005342 2.8e-10 68.9 70 57.1
Psat0s3278g0040 Pisum sativum HOM05D001340 ORTHO05D005342 2.8e-10 68.9 128 43.8
VMungo0720G0959 Vigna mungo HOM05D001340 ORTHO05D005342 2.8e-10 68.9 109 46.8
SEGI_40234 Sequoiadendron giganteum HOM05D001340 ORTHO05D005342 3.6e-10 68.6 106 43.4
Glyma.10G146800 Glycine max HOM05D001340 ORTHO05D005342 4.7e-10 68.2 118 44.9
Aqoxy7G01123 Aquilegia oxysepala HOM05D001340 ORTHO05D005342 8.1e-10 67.4 112 46.4
Phvul.007G201600 Phaseolus vulgaris HOM05D001340 ORTHO05D005342 8.1e-10 67.4 48 72.9
ATR0796G093 Amborella trichopoda HOM05D001340 ORTHO05D005342 1.8e-09 66.2 125 41.6
Pp3c24_17620 Physcomitrium patens HOM05D001340 ORTHO05D005342 8.9e-09 63.9 98 48.0
CBR_g18648 Chara braunii HOM05D001340 ORTHO05D005342 1.5e-08 63.2 53 60.4
CBR_g3787 Chara braunii HOM05D001340 ORTHO05D005342 2.0e-08 62.8 53 58.5
AUR62031620 Chenopodium quinoa HOM05D001340 ORTHO05D005342 2.0e-08 62.8 43 69.8
Mapoly0127s0050 Marchantia polymorpha HOM05D001340 ORTHO05D005342 2.0e-08 62.8 57 61.4
CBR_g48354 Chara braunii HOM05D001340 ORTHO05D005342 2.6e-08 62.4 53 58.5
EL10Ac3g04962 Beta vulgaris HOM05D001340 ORTHO05D005342 5.8e-08 61.2 97 43.3
AUR62020544 Chenopodium quinoa HOM05D017185 ORTHO05D002895 7.5e-08 60.8 69 47.8
SMO119G0158 Selaginella moellendorffii HOM05D001340 ORTHO05D005342 9.9e-08 60.5 63 58.7
AUR62015688 Chenopodium quinoa HOM05D001340 ORTHO05D005342 1.3e-07 60.1 43 67.4
AagrBONN_evm.TU.Sc2ySwM_340.376 Anthoceros agrestis HOM05D001340 ORTHO05D005342 6.4e-07 57.8 52 57.7
AUR62015660 Chenopodium quinoa HOM05D001340 ORTHO05D005342 2.4e-06 55.8 73 43.8
AUR62020511 Chenopodium quinoa HOM05D001340 ORTHO05D011069 3.2e-06 55.5 48 56.2
CBR_g45761 Chara braunii HOM05D001340 ORTHO05D005342 7.1e-06 54.3 48 58.3
Hund23305 Selenicereus undatus HOM05D001340 ORTHO05D011069 7.1e-06 54.3 50 62.0


User provided reference genes

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