Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g31757 Brassica carinata HOM05D006392 ORTHO05D008010 3.4e-222 774.6 379 100.0
A06p48320 Brassica napus HOM05D006392 ORTHO05D008010 1.3e-218 762.7 379 97.9
BraA06t27702Z Brassica rapa HOM05D006392 ORTHO05D008010 1.9e-217 758.8 379 97.4
BcaC02g10765 Brassica carinata HOM05D006392 ORTHO05D008010 2.0e-214 748.8 379 96.0
C04p25370 Brassica napus HOM05D006392 ORTHO05D008010 5.0e-213 744.2 380 95.8
BolC4t24044H Brassica oleracea HOM05D006392 ORTHO05D008010 5.0e-213 744.2 380 95.8
Sp7g07860 Schrenkiella parvula HOM05D006392 ORTHO05D008010 3.7e-208 728.0 382 93.2
Thhalv10003229m.g Eutrema salsugineum HOM05D006392 ORTHO05D008010 1.8e-194 682.6 379 87.9
AL8G18870 Arabidopsis lyrata HOM05D006392 ORTHO05D008010 7.5e-193 677.2 382 86.1
AT5G42470 Arabidopsis thaliana HOM05D006392 ORTHO05D008010 3.2e-188 661.8 383 84.6
Carub.0008s0658 Capsella rubella HOM05D006392 ORTHO05D008010 2.2e-184 649.0 384 82.0
THA.LOC104809190 Tarenaya hassleriana HOM05D006392 ORTHO05D008010 3.4e-169 598.6 379 76.3
Aa31LG9G12590 Aethionema arabicum HOM05D006392 ORTHO05D008010 8.3e-168 594.0 352 82.1
Cpa.g.sc26.51 Carica papaya HOM05D006392 ORTHO05D008010 9.5e-156 553.9 382 69.1
Thecc.08G045200 Theobroma cacao HOM05D006392 ORTHO05D008010 1.5e-148 530.0 383 66.1
TWI56G0581 Tripterygium wilfordii HOM05D006392 ORTHO05D008010 2.4e-146 522.7 382 64.4
Gorai.002G123300 Gossypium raimondii HOM05D006392 ORTHO05D008010 1.7e-144 516.5 381 64.0
Duzib093G0848 Durio zibethinus HOM05D006392 ORTHO05D008010 3.8e-144 515.4 383 63.4
Gohir.A01G111000 Gossypium hirsutum HOM05D006392 ORTHO05D008010 3.8e-144 515.4 381 63.8
Gohir.D01G097700 Gossypium hirsutum HOM05D006392 ORTHO05D008010 5.4e-143 511.5 381 63.5
Prupe.1G364700 Prunus persica HOM05D006392 ORTHO05D008010 7.1e-143 511.1 387 63.3
Potri.005G240000 Populus trichocarpa HOM05D006392 ORTHO05D008010 4.6e-142 508.4 381 62.2
Sabra05G0185500 Salix brachista HOM05D006392 ORTHO05D008010 6.0e-142 508.1 381 62.5
GSVIVG01009916001 Vitis vinifera HOM05D006392 ORTHO05D008010 1.5e-140 503.4 377 63.9
Potri.002G021700 Populus trichocarpa HOM05D006392 ORTHO05D008010 1.9e-140 503.1 381 61.9
CiPaw.07G149200 Carya illinoinensis HOM05D006392 ORTHO05D008010 4.3e-140 501.9 379 62.5
Eucgr.F01664 Eucalyptus grandis HOM05D006392 ORTHO05D008010 7.3e-140 501.1 380 62.9
QL02p011683 Quercus lobata HOM05D006392 ORTHO05D008010 1.2e-139 500.4 384 62.2
Ciclev10001496m.g Citrus clementina HOM05D006392 ORTHO05D008010 1.4e-138 496.9 379 63.6
MD15G1011700 Malus domestica HOM05D006392 ORTHO05D008010 9.0e-138 494.2 382 63.1
Lalb_Chr20g0119891 Lupinus albus HOM05D006392 ORTHO05D008010 4.4e-137 491.9 374 61.0
Haze_22639 Corylus avellana HOM05D006392 ORTHO05D008010 2.2e-136 489.6 419 58.7
Hma1.2p1_0638F.1_g193900 Hydrangea macrophylla HOM05D006392 ORTHO05D008010 2.2e-136 489.6 375 64.0
MD08G1012700 Malus domestica HOM05D006392 ORTHO05D008010 2.4e-135 486.1 382 61.8
CsaV3_3G045910 Cucumis sativus L. HOM05D006392 ORTHO05D008010 4.2e-135 485.3 380 58.7
TAR628G0005 Trochodendron aralioides HOM05D006392 ORTHO05D008010 5.4e-135 485.0 379 61.7
Ca_00791_v3 Cicer arietinum L. HOM05D006392 ORTHO05D008010 1.2e-134 483.8 376 62.0
Glyma.09G103100 Glycine max HOM05D006392 ORTHO05D008010 2.7e-134 482.6 374 62.3
Sabra02G0018100 Salix brachista HOM05D006392 ORTHO05D008010 1.0e-133 480.7 413 57.1
Sed0018359 Sechium edule HOM05D006392 ORTHO05D008010 1.7e-133 479.9 377 58.9
Lj6g0002207 Lotus japonicus HOM05D006392 ORTHO05D008010 6.6e-133 478.0 371 62.5
TWI36G0533 Tripterygium wilfordii HOM05D006392 ORTHO05D008010 6.6e-133 478.0 361 62.3
Ca_07152_v3 Cicer arietinum L. HOM05D006392 ORTHO05D008010 5.6e-132 474.9 379 60.7
Rhsim06G0021200 Rhododendron simsii HOM05D006392 ORTHO05D008010 5.6e-132 474.9 378 60.8
Lj4C23T1 Lonicera japonica HOM05D006392 ORTHO05D008010 1.3e-131 473.8 397 59.9
CSS0006206 Camellia sinensis var. sinensis HOM05D006392 ORTHO05D008010 2.8e-131 472.6 378 60.6
CSS0012189 Camellia sinensis var. sinensis HOM05D006392 ORTHO05D008010 2.8e-131 472.6 378 60.6
PGR083G2660 Punica granatum HOM05D006392 ORTHO05D008010 4.8e-131 471.9 379 60.7
MSTRG.1188 Avicennia marina HOM05D006392 ORTHO05D008010 8.1e-131 471.1 373 61.7
Medtr2g029040 Medicago truncatula HOM05D006392 ORTHO05D008010 8.1e-131 471.1 378 60.3
PGSC0003DMG400009939 Solanum tuberosum HOM05D006392 ORTHO05D008010 1.1e-130 470.7 379 59.6
ECA233G3412 Erigeron canadensis HOM05D006392 ORTHO05D008010 1.4e-130 470.3 381 59.8
Solyc04g081500.3 Solanum lycopersicum HOM05D006392 ORTHO05D008010 1.4e-130 470.3 379 59.4
Manes.05G146900 Manihot esculenta HOM05D006392 ORTHO05D008010 2.4e-130 469.5 381 59.6
Sopen04g035110 Solanum pennellii HOM05D006392 ORTHO05D008010 2.4e-130 469.5 379 59.4
Phvul.005G022200 Phaseolus vulgaris HOM05D006392 ORTHO05D008010 3.1e-130 469.2 376 60.9
FvH4_2g38390 Fragaria vesca HOM05D006392 ORTHO05D008010 9.0e-130 467.6 373 61.4
HanXRQChr13g0387101 Helianthus annuus HOM05D006392 ORTHO05D008010 1.2e-129 467.2 379 59.1
CAN.G311.35 Capsicum annuum HOM05D006392 ORTHO05D008010 1.5e-129 466.8 379 58.8
Cfa013957 Carpinus fangiana HOM05D006392 ORTHO05D008010 7.6e-129 464.5 373 61.9
arahy.Tifrunner.gnm1.ann1.8AJY4P Arachis hypogaea HOM05D006392 ORTHO05D008010 1.7e-128 463.4 361 62.9
CANSAT25G2040 Cannabis sativa HOM05D006392 ORTHO05D008010 1.7e-128 463.4 382 57.9
Actinidia21265 Actinidia chinensis HOM05D006392 ORTHO05D008010 4.9e-128 461.8 378 59.5
arahy.Tifrunner.gnm1.ann1.GAE5DS Arachis hypogaea HOM05D006392 ORTHO05D008010 4.9e-128 461.8 361 62.9
AUR62033899 Chenopodium quinoa HOM05D006392 ORTHO05D008010 6.4e-128 461.5 375 60.0
RcHm_v2.0_Chr6g0302911 Rosa chinensis HOM05D006392 ORTHO05D008010 9.3e-127 457.6 373 60.9
Oeu014179.1 Olea europaea HOM05D006392 ORTHO05D008010 1.6e-126 456.8 377 59.4
PSO675G2043 Papaver somniferum HOM05D006392 ORTHO05D008010 1.6e-126 456.8 373 59.8
Aqoxy6G00284_Aqoxy6G00285 Aquilegia oxysepala HOM05D006392 ORTHO05D008010 1.8e-125 453.4 371 58.8
PSO541G2958 Papaver somniferum HOM05D006392 ORTHO05D008010 2.3e-125 453.0 373 59.0
ATR0810G120 Amborella trichopoda HOM05D006392 ORTHO05D008010 4.3e-124 448.7 375 56.8
VMungo1080G0965 Vigna mungo HOM05D006392 ORTHO05D008010 5.6e-124 448.4 352 60.8
Migut.C00843 Erythranthe guttata HOM05D006392 ORTHO05D008010 1.4e-122 443.7 375 57.6
SalBow7G2189 Salvia bowleyana HOM05D006392 ORTHO05D008010 1.4e-122 443.7 383 57.2
DCAR_023015 Daucus carota HOM05D006392 ORTHO05D008010 2.4e-122 443.0 378 57.1
Duzib116G0836 Durio zibethinus HOM05D006392 ORTHO05D008010 2.4e-122 443.0 384 57.6
Lsat_1_v5_gn_8_30701 Lactuca sativa HOM05D006392 ORTHO05D008010 1.2e-121 440.7 379 56.7
EL10Ac1g02188 Beta vulgaris HOM05D006392 ORTHO05D008010 1.4e-119 433.7 356 59.0
FAN20G2474 Fragaria x ananassa HOM05D006392 ORTHO05D008010 6.7e-117 424.9 373 57.4
FAN15G0959 Fragaria x ananassa HOM05D006392 ORTHO05D008010 1.1e-116 424.1 373 57.1
FAN27G1073 Fragaria x ananassa HOM05D006392 ORTHO05D008010 8.2e-115 417.9 373 56.6
SEGI_16132 Sequoiadendron giganteum HOM05D006392 ORTHO05D008010 3.4e-113 412.5 377 52.3
Psat1g169520 Pisum sativum HOM05D006392 ORTHO05D008010 4.9e-112 408.7 321 62.3
Nitab4.5_0013390g0010 Nicotiana tabacum HOM05D006392 ORTHO05D008010 6.5e-112 408.3 379 53.0
Nn1g05904 Nelumbo nucifera HOM05D006392 ORTHO05D008010 1.6e-110 403.7 378 53.4
Os06g0715600 Oryza sativa ssp. japonica HOM05D006392 ORTHO05D008010 1.0e-109 401.0 370 53.0
AUR62041903 Chenopodium quinoa HOM05D006392 ORTHO05D008010 1.3e-109 400.6 375 53.9
Hma1.2p1_0638F.1_g193910 Hydrangea macrophylla HOM05D006392 ORTHO05D008010 2.2e-107 393.3 398 53.0
CDE04G0374 Ceratophyllum demersum HOM05D006392 ORTHO05D008010 6.9e-106 388.3 378 52.1
CARHR181930 Cardamine hirsuta HOM05D006392 ORTHO05D008010 9.0e-106 387.9 218 84.4
SGA_v2.0_scaffold11G05922 Striga asiatica HOM05D006392 ORTHO05D008010 1.2e-105 387.5 373 51.7
MBI05_g07507_MAGBIO Magnolia biondii HOM05D006392 ORTHO05D008010 1.5e-105 387.1 357 55.7
MD11G1014100 Malus domestica HOM05D006392 ORTHO05D008010 1.5e-105 387.1 283 64.7
Zm00001eb228060 Zea mays HOM05D006392 ORTHO05D008010 1.5e-105 387.1 373 52.0
Dinv31849 Davidia involucrata HOM05D006392 ORTHO05D008010 1.0e-104 384.4 304 63.2
Eucgr.F02661 Eucalyptus grandis HOM05D006392 ORTHO05D008010 3.8e-104 382.5 305 61.6
Hund05186 Selenicereus undatus HOM05D006392 ORTHO05D008010 3.2e-103 379.4 385 52.2
Sc02g0008600 Simmondsia chinensis HOM05D006392 ORTHO05D008010 1.2e-102 377.5 330 57.0
Peaxi162Scf00438g00835 Petunia axillaris HOM05D006392 ORTHO05D008010 4.6e-102 375.6 379 50.1
COL.COLO4_26140 Corchorus olitorius HOM05D006392 ORTHO05D008010 1.1e-100 370.9 288 63.5
TPR.G17497 Trifolium pratense HOM05D006392 ORTHO05D008010 1.1e-100 370.9 260 68.1
HPP92_024091 Vanilla planifolia HOM05D006392 ORTHO05D008010 2.6e-97 359.8 380 49.2
Actinidia35835 Actinidia chinensis HOM05D006392 ORTHO05D008010 1.4e-95 354.0 377 49.3
vmacro07583 Vaccinium macrocarpon HOM05D006392 ORTHO05D008010 1.9e-87 327.0 307 55.4
MELO3C030484.2 Cucumis melo HOM05D006392 ORTHO05D008010 3.0e-85 319.7 398 43.5
Mapoly0064s0103 Marchantia polymorpha HOM05D006392 ORTHO05D008010 8.8e-85 318.2 381 43.3
Glyma.15G275100 Glycine max HOM05D006392 ORTHO05D008010 2.6e-84 316.6 226 65.9
Pp3c4_9730 Physcomitrium patens HOM05D006392 ORTHO05D008010 6.3e-83 312.0 377 45.1
unitig_32.g11136 Utricularia gibba HOM05D006392 ORTHO05D008010 2.4e-82 310.1 283 53.7
Actinidia16990 Actinidia chinensis HOM05D006392 ORTHO05D004187 7.0e-82 308.5 273 57.1
AagrBONN_evm.TU.Sc2ySwM_117.3435 Anthoceros agrestis HOM05D006392 ORTHO05D008010 7.0e-82 308.5 371 45.3
Atru.chr13.285 Acer truncatum HOM05D006392 ORTHO05D008010 1.3e-80 304.3 342 48.2
SMO196G0156 Selaginella moellendorffii HOM05D006392 ORTHO05D008010 1.1e-79 301.2 378 40.7
Cc10_g01630 Coffea canephora HOM05D006392 ORTHO05D008010 1.6e-62 244.2 183 60.1
CBR_g23034 Chara braunii HOM05D006392 ORTHO05D008010 2.1e-62 243.8 394 34.3
Cc10_g01620 Coffea canephora HOM05D006392 ORTHO05D008010 7.3e-55 218.8 194 56.7
Aqoxy4G01015 Aquilegia oxysepala HOM05D006392 ORTHO05D008010 7.8e-49 198.7 164 58.5
Ah.11g039750 Amaranthus hybridus HOM05D006392 ORTHO05D008010 1.9e-34 151.0 148 52.7
RcHm_v2.0_Chr4g0398171 Rosa chinensis HOM05D006392 ORTHO05D008010 2.9e-27 127.1 110 54.5
Actinidia27159 Actinidia chinensis HOM05D006392 ORTHO05D008010 1.6e-25 121.3 228 37.3
RcHm_v2.0_Chr4g0398161 Rosa chinensis HOM05D006392 ORTHO05D008010 1.6e-25 121.3 95 64.2
TPR.G29580 Trifolium pratense HOM05D006392 ORTHO05D008010 3.6e-22 110.2 114 46.5
Zm00001eb340150 Zea mays HOM05D006392 ORTHO05D008010 2.8e-14 84.0 77 51.9
ClCG05G018230 Citrullus lanatus HOM05D006392 ORTHO05D008010 9.0e-13 79.0 49 63.3
Cre09.g401367 Chlamydomonas reinhardtii HOM05D006392 ORTHO05D008010 2.3e-08 64.3 139 30.9


User provided reference genes

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