Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g31752 Brassica carinata HOM05D003945 ORTHO05D004625 0.0e+00 1664.8 835 100.0
C04p25260 Brassica napus HOM05D003945 ORTHO05D004625 0.0e+00 1594.3 841 96.4
BolC4t24032H Brassica oleracea HOM05D003945 ORTHO05D004625 0.0e+00 1594.3 841 96.4
BcaC02g10772 Brassica carinata HOM05D003945 ORTHO05D004625 0.0e+00 1590.5 840 96.2
Thhalv10022547m.g Eutrema salsugineum HOM05D003945 ORTHO05D004625 0.0e+00 1528.8 846 91.6
A06p48280 Brassica napus HOM05D003945 ORTHO05D004625 0.0e+00 1527.3 840 93.9
BraA06t27697Z Brassica rapa HOM05D003945 ORTHO05D004625 0.0e+00 1525.4 840 93.7
Sp2g07000 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1504.2 846 91.5
SpUn0022_0010 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1504.2 846 91.5
SpUn0026_0070 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1504.2 846 91.5
SpUn0029_0030 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1504.2 846 91.5
Carub.0008s0641 Capsella rubella HOM05D003945 ORTHO05D004625 0.0e+00 1497.3 846 90.0
AL8G18650 Arabidopsis lyrata HOM05D003945 ORTHO05D004625 0.0e+00 1489.6 843 90.9
CARHR181510 Cardamine hirsuta HOM05D003945 ORTHO05D004625 0.0e+00 1486.5 842 89.8
AT5G42620 Arabidopsis thaliana HOM05D003945 ORTHO05D004625 0.0e+00 1471.4 844 89.7
Aa31LG9G12670 Aethionema arabicum HOM05D003945 ORTHO05D004625 0.0e+00 1468.8 842 88.2
THA.LOC104806880 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 0.0e+00 1406.3 847 85.4
THA.LOC104809128 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 0.0e+00 1392.9 845 83.9
Cpa.g.sc64.47 Carica papaya HOM05D003945 ORTHO05D004625 0.0e+00 1341.3 816 82.6
Duzib093G0983 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1340.9 836 81.7
Ciclev10000250m.g Citrus clementina HOM05D003945 ORTHO05D004625 0.0e+00 1337.0 835 81.0
QL02p007358 Quercus lobata HOM05D003945 ORTHO05D004625 0.0e+00 1333.2 849 80.2
Duzib116G0373 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1332.0 837 81.4
CsaV3_2G028440 Cucumis sativus L. HOM05D003945 ORTHO05D004625 0.0e+00 1330.9 840 80.4
Thecc.08G022100 Theobroma cacao HOM05D003945 ORTHO05D004625 0.0e+00 1329.3 837 81.2
Sed0018308 Sechium edule HOM05D003945 ORTHO05D004625 0.0e+00 1327.4 840 80.5
Potri.002G133300 Populus trichocarpa HOM05D003945 ORTHO05D004625 0.0e+00 1324.7 842 80.0
GSVIVG01009647001 Vitis vinifera HOM05D003945 ORTHO05D004625 0.0e+00 1324.3 844 80.2
Duzib041G0798 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1320.8 836 80.4
Lj5g0000532 Lotus japonicus HOM05D003945 ORTHO05D004625 0.0e+00 1320.4 835 81.1
Gorai.010G012200 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1318.5 834 80.3
Manes.05G163500 Manihot esculenta HOM05D003945 ORTHO05D004625 0.0e+00 1318.5 843 80.7
Gohir.D06G009400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1318.1 841 79.9
CANSAT25G0653 Cannabis sativa HOM05D003945 ORTHO05D004625 0.0e+00 1316.2 835 79.5
Cfa018443 Carpinus fangiana HOM05D003945 ORTHO05D004625 0.0e+00 1316.2 843 79.6
Glyma.06G034400 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1316.2 836 81.0
Gohir.A06G012000 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1314.3 841 79.7
Sed0019202 Sechium edule HOM05D003945 ORTHO05D004625 0.0e+00 1313.9 841 79.7
Haze_17624 Corylus avellana HOM05D003945 ORTHO05D004625 0.0e+00 1312.0 814 81.4
TWI56G0898 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 0.0e+00 1309.3 822 81.1
CiPaw.15G072600 Carya illinoinensis HOM05D003945 ORTHO05D004625 0.0e+00 1307.4 842 79.5
Potri.014G040800 Populus trichocarpa HOM05D003945 ORTHO05D004625 0.0e+00 1306.2 840 79.4
Gorai.009G205100 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1305.0 836 79.4
arahy.Tifrunner.gnm1.ann1.6F7CQG Arachis hypogaea HOM05D003945 ORTHO05D004625 0.0e+00 1304.7 837 80.3
Phvul.009G055900 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1302.7 840 80.4
Glyma.14G077200 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1300.4 840 78.9
Gohir.D05G199800 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1300.0 836 79.2
Glyma.04G034200 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1299.3 836 80.3
Sabra02G0104100 Salix brachista HOM05D003945 ORTHO05D004625 0.0e+00 1295.0 838 79.7
Prupe.1G383600 Prunus persica HOM05D003945 ORTHO05D004625 0.0e+00 1293.1 840 77.6
VMungo0647G1838 Vigna mungo HOM05D003945 ORTHO05D004625 0.0e+00 1292.3 821 79.8
FvH4_2g40290 Fragaria vesca HOM05D003945 ORTHO05D004625 0.0e+00 1291.9 841 78.2
Medtr3g111630 Medicago truncatula HOM05D003945 ORTHO05D004625 0.0e+00 1291.9 820 81.0
FAN27G0143 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1288.5 841 78.1
Psat5g018920 Pisum sativum HOM05D003945 ORTHO05D004625 0.0e+00 1287.7 823 79.6
Dinv39382 Davidia involucrata HOM05D003945 ORTHO05D004625 0.0e+00 1287.3 890 75.5
CSS0008782 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 0.0e+00 1286.2 849 77.6
CiPaw.16G054000 Carya illinoinensis HOM05D003945 ORTHO05D004625 0.0e+00 1286.2 822 79.1
Lj1g0024333 Lotus japonicus HOM05D003945 ORTHO05D004625 0.0e+00 1286.2 837 78.7
Manes.18G029900 Manihot esculenta HOM05D003945 ORTHO05D004625 0.0e+00 1283.9 810 79.5
Sabra14G0029800 Salix brachista HOM05D003945 ORTHO05D004625 0.0e+00 1283.9 889 75.3
TPR.G12378 Trifolium pratense HOM05D003945 ORTHO05D004625 0.0e+00 1283.5 828 80.1
TWI12G1285 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 0.0e+00 1283.1 813 81.3
RcHm_v2.0_Chr6g0300451 Rosa chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1282.3 839 77.8
FAN20G0651 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1281.9 841 77.8
TAR381G0557 Trochodendron aralioides HOM05D003945 ORTHO05D004625 0.0e+00 1281.5 822 79.3
Lalb_Chr14g0369061 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1281.2 834 79.0
arahy.Tifrunner.gnm1.ann1.SKM2GN Arachis hypogaea HOM05D003945 ORTHO05D004625 0.0e+00 1280.8 872 72.7
Gorai.009G274100 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1280.8 837 78.3
Gohir.D05G262200 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1280.0 837 78.3
Lalb_Chr24g0399061 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1280.0 837 78.3
Nn5g29493 Nelumbo nucifera HOM05D003945 ORTHO05D004625 0.0e+00 1279.2 838 77.8
AUR62033857 Chenopodium quinoa HOM05D003945 ORTHO05D004625 0.0e+00 1277.3 833 77.8
Aqoxy6G01012 Aquilegia oxysepala HOM05D003945 ORTHO05D004625 0.0e+00 1276.5 813 79.5
VMungo1309G1712 Vigna mungo HOM05D003945 ORTHO05D004625 0.0e+00 1276.2 838 78.4
Gohir.A05G260400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1273.1 837 78.7
AUR62041666 Chenopodium quinoa HOM05D003945 ORTHO05D004625 0.0e+00 1271.1 846 76.2
PSO541G5148 Papaver somniferum HOM05D003945 ORTHO05D004625 0.0e+00 1271.1 821 78.6
FAN15G1095 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1270.4 839 77.6
PSO675G7084 Papaver somniferum HOM05D003945 ORTHO05D004625 0.0e+00 1270.4 821 78.4
PGSC0003DMG400016879 Solanum tuberosum HOM05D003945 ORTHO05D004625 0.0e+00 1270.0 826 78.6
Lj4A44G44 Lonicera japonica HOM05D003945 ORTHO05D004625 0.0e+00 1268.1 807 79.3
Psat6g032680 Pisum sativum HOM05D003945 ORTHO05D004625 0.0e+00 1265.8 832 79.7
Actinidia22566 Actinidia chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1264.2 845 76.9
MBI16_g13147_MAGBIO Magnolia biondii HOM05D003945 ORTHO05D004625 0.0e+00 1263.8 818 78.9
PGR031G2694 Punica granatum HOM05D003945 ORTHO05D004625 0.0e+00 1261.1 818 79.5
EL10Ac1g01765 Beta vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1260.4 811 78.3
CAN.G371.130 Capsicum annuum HOM05D003945 ORTHO05D004625 0.0e+00 1256.9 828 78.4
Lalb_Chr22g0355401 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1253.0 838 77.0
Sopen04g033470 Solanum pennellii HOM05D003945 ORTHO05D004625 0.0e+00 1253.0 826 78.0
Cc10_g03360 Coffea canephora HOM05D003945 ORTHO05D004625 0.0e+00 1251.5 827 78.1
Solyc04g079900.3 Solanum lycopersicum HOM05D003945 ORTHO05D004625 0.0e+00 1250.7 826 78.0
Ah.11g043210 Amaranthus hybridus HOM05D003945 ORTHO05D004625 0.0e+00 1249.2 813 78.7
Nn1g05109 Nelumbo nucifera HOM05D003945 ORTHO05D004625 0.0e+00 1248.8 836 77.2
Nitab4.5_0000110g0200 Nicotiana tabacum HOM05D003945 ORTHO05D004625 0.0e+00 1245.7 818 78.2
vmacro21611 Vaccinium macrocarpon HOM05D003945 ORTHO05D004625 0.0e+00 1244.2 837 77.4
ATR0733G077 Amborella trichopoda HOM05D003945 ORTHO05D004625 0.0e+00 1243.8 812 77.7
MD08G1036300 Malus domestica HOM05D003945 ORTHO05D004625 0.0e+00 1241.9 803 78.3
Nitab4.5_0003588g0030 Nicotiana tabacum HOM05D003945 ORTHO05D004625 0.0e+00 1241.9 832 77.5
SalBow8G1011 Salvia bowleyana HOM05D003945 ORTHO05D004625 0.0e+00 1241.5 825 77.5
Eucgr.A00488 Eucalyptus grandis HOM05D003945 ORTHO05D004625 0.0e+00 1236.5 817 79.3
CDE04G0514 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 0.0e+00 1234.6 841 75.7
Peaxi162Scf00057g01112 Petunia axillaris HOM05D003945 ORTHO05D004625 0.0e+00 1234.2 834 77.5
DCAR_019505 Daucus carota HOM05D003945 ORTHO05D004625 0.0e+00 1233.8 814 76.9
CDE07G1908 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 0.0e+00 1229.5 831 75.7
MELO3C010920.2 Cucumis melo HOM05D003945 ORTHO05D004625 0.0e+00 1229.2 881 71.6
Oeu009604.1 Olea europaea HOM05D003945 ORTHO05D004625 0.0e+00 1228.0 857 74.3
DCAR_012756 Daucus carota HOM05D003945 ORTHO05D004625 0.0e+00 1226.8 825 76.0
MSTRG.24306 Avicennia marina HOM05D003945 ORTHO05D004625 0.0e+00 1224.9 807 77.8
HanXRQChr00c0117g0571731 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1221.1 817 78.0
Os03g0731500 Oryza sativa ssp. japonica HOM05D003945 ORTHO05D004625 0.0e+00 1220.3 831 75.1
Atru.chr13.549 Acer truncatum HOM05D003945 ORTHO05D004625 0.0e+00 1216.4 869 73.5
MSTRG.1299 Avicennia marina HOM05D003945 ORTHO05D004625 0.0e+00 1215.3 826 75.4
HanXRQChr04g0104741 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1212.2 837 75.4
Lsat_1_v5_gn_1_18561 Lactuca sativa HOM05D003945 ORTHO05D004625 0.0e+00 1211.8 813 76.9
Dinv36042 Davidia involucrata HOM05D003945 ORTHO05D004625 0.0e+00 1206.4 772 80.7
Glyma.17G248400 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1202.2 777 80.3
Gohir.A05G196700 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1198.3 836 74.2
Hund17646 Selenicereus undatus HOM05D003945 ORTHO05D004625 0.0e+00 1195.6 785 76.9
Zm00001eb056220 Zea mays HOM05D003945 ORTHO05D004625 0.0e+00 1195.6 812 74.9
SGA_v2.0_scaffold48G18049 Striga asiatica HOM05D003945 ORTHO05D004625 0.0e+00 1191.0 847 70.0
Medtr1g021950 Medicago truncatula HOM05D003945 ORTHO05D004625 0.0e+00 1189.1 807 76.2
Lj4C783T17 Lonicera japonica HOM05D003945 ORTHO05D004625 0.0e+00 1183.3 869 71.8
SEGI_23274 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 0.0e+00 1182.5 810 74.2
ECA232G0159 Erigeron canadensis HOM05D003945 ORTHO05D004625 0.0e+00 1181.8 814 76.0
HanXRQChr09g0268441 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1181.0 812 75.1
ECA247G1056 Erigeron canadensis HOM05D003945 ORTHO05D004625 0.0e+00 1179.1 826 75.5
Sc02g0006540 Simmondsia chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1173.3 753 78.9
Ca_13337_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 0.0e+00 1170.6 834 74.3
Phvul.001G016500 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1170.6 695 83.3
Migut.C00687 Erythranthe guttata HOM05D003945 ORTHO05D004625 0.0e+00 1164.1 840 72.7
Lsat_1_v5_gn_4_119740 Lactuca sativa HOM05D003945 ORTHO05D004625 0.0e+00 1162.1 818 74.9
SalBow8G4281 Salvia bowleyana HOM05D003945 ORTHO05D004625 0.0e+00 1155.6 818 73.2
Mapoly0001s0355 Marchantia polymorpha HOM05D003945 ORTHO05D004625 0.0e+00 1154.4 816 71.9
SGA_v2.0_scaffold24G10266 Striga asiatica HOM05D003945 ORTHO05D004625 0.0e+00 1136.7 903 67.6
Ca_15527_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 0.0e+00 1134.8 829 72.9
SEGI_40605 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 0.0e+00 1131.7 805 72.3
Pp3c15_10300 Physcomitrium patens HOM05D003945 ORTHO05D004625 0.0e+00 1127.5 810 71.4
Pp3c9_8900 Physcomitrium patens HOM05D003945 ORTHO05D004625 0.0e+00 1117.4 805 70.7
TPR.G15756 Trifolium pratense HOM05D003945 ORTHO05D004625 0.0e+00 1107.8 771 72.9
Rhsim06G0036600 Rhododendron simsii HOM05D003945 ORTHO05D004625 0.0e+00 1103.6 734 77.9
Oeu019083.2 Olea europaea HOM05D003945 ORTHO05D004625 7.4e-294 1013.8 828 66.8
AagrBONN_evm.TU.Sc2ySwM_228.1369 Anthoceros agrestis HOM05D003945 ORTHO05D004625 2.2e-269 932.6 627 71.8
CSS0002441 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 1.8e-268 929.5 582 78.4
ClCG08G015350 Citrullus lanatus HOM05D003945 ORTHO05D004625 8.3e-261 904.0 547 83.7
TAR625G1327 Trochodendron aralioides HOM05D003945 ORTHO05D004625 1.2e-251 873.6 834 60.6
SHI08218 Sapria himalayana HOM05D003945 ORTHO05D004625 2.3e-250 869.4 589 73.7
COL.COLO4_26375 Corchorus olitorius HOM05D003945 ORTHO05D004625 8.6e-250 867.5 514 82.3
TAR625G0556 Trochodendron aralioides HOM05D003945 ORTHO05D004625 1.8e-167 594.0 709 51.8
unitig_899.g15618 Utricularia gibba HOM05D003945 ORTHO05D004625 1.2e-142 511.5 460 58.0
Actinidia15302 Actinidia chinensis HOM05D003945 ORTHO05D004625 5.7e-137 492.7 355 76.9
Actinidia15303 Actinidia chinensis HOM05D003945 ORTHO05D004625 8.3e-120 435.6 328 68.9
unitig_899.g15619 Utricularia gibba HOM05D003945 ORTHO05D004625 2.1e-107 394.4 315 72.1
TAR625G0675 Trochodendron aralioides HOM05D003945 ORTHO05D004625 5.8e-97 359.8 405 52.1
HanXRQChr02g0037151 Helianthus annuus HOM05D003945 ORTHO05D004625 4.0e-90 337.0 274 66.1
TAR625G1534 Trochodendron aralioides HOM05D003945 ORTHO05D004625 3.2e-87 327.4 580 44.7
arahy.Tifrunner.gnm1.ann1.URD35Y Arachis hypogaea HOM05D003945 ORTHO05D004625 8.8e-61 239.6 137 78.8
Pp3c1_5980 Physcomitrium patens HOM05D003945 ORTHO05D004625 2.8e-59 234.6 156 76.3
SGA_v2.0_scaffold18G08518 Striga asiatica HOM05D003945 ORTHO05D004625 6.7e-45 186.8 163 57.1
CBR_g2789 Chara braunii HOM05D003945 ORTHO05D004625 4.2e-39 167.5 503 29.0
DCAR_031552 Daucus carota HOM05D003945 ORTHO05D004625 8.5e-32 143.3 76 86.8
PRCOL_00003766 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 5.5e-31 140.6 472 26.9
PRCOL_00006675 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 5.5e-31 140.6 469 27.5
CiPaw.15G072700 Carya illinoinensis HOM05D003945 ORTHO05D004625 1.6e-25 122.5 63 90.5
Cre01.g001400 Chlamydomonas reinhardtii HOM05D003945 ORTHO05D004625 5.0e-24 117.5 412 28.6
Pp3c1_5940 Physcomitrium patens HOM05D003945 ORTHO05D004625 5.0e-24 117.5 96 63.5
PRCOL_00001495 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 2.5e-23 115.2 472 26.9
TPR.G27891 Trifolium pratense HOM05D003945 ORTHO05D004625 5.7e-20 104.0 64 70.3
CBR_g32472 Chara braunii HOM05D000019 ORTHO05D000002 7.8e-17 93.6 266 28.2
TAR625G0971 Trochodendron aralioides HOM05D003945 ORTHO05D004625 1.3e-16 92.8 121 47.9
CBR_g38919 Chara braunii HOM05D000019 ORTHO05D000353 1.5e-15 89.4 339 28.3
arahy.Tifrunner.gnm1.ann1.4NEG3Q Arachis hypogaea HOM05D003945 ORTHO05D004625 7.5e-12 77.0 76 50.0
SGA_v2.0_scaffold210G42079 Striga asiatica HOM05D003945 ORTHO05D004625 2.2e-11 75.5 126 38.1
CBR_g37162 Chara braunii HOM05D000019 ORTHO05D000048 8.6e-08 63.5 102 38.2
Lsat_1_v5_gn_5_96440 Lactuca sativa HOM05D003945 ORTHO05D004625 9.5e-07 60.1 38 76.3


User provided reference genes

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