Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g31744 Brassica carinata HOM05D006442 ORTHO05D007980 1.0e-75 286.6 135 100.0
BcaC02g10802 Brassica carinata HOM05D006442 ORTHO05D007980 2.1e-73 278.9 135 97.0
C04p24990 Brassica napus HOM05D006442 ORTHO05D007980 2.1e-73 278.9 135 97.0
BolC4t23999H Brassica oleracea HOM05D006442 ORTHO05D007980 2.1e-73 278.9 135 97.0
A06p48230 Brassica napus HOM05D006442 ORTHO05D007980 6.1e-73 277.3 135 95.6
BraA06t27691Z Brassica rapa HOM05D006442 ORTHO05D007980 6.1e-73 277.3 135 95.6
AL8G18110 Arabidopsis lyrata HOM05D006442 ORTHO05D007980 7.7e-68 260.4 135 88.9
Sp2g07550 Schrenkiella parvula HOM05D006442 ORTHO05D007980 1.0e-67 260.0 141 87.9
Thhalv10003289m.g Eutrema salsugineum HOM05D006442 ORTHO05D007980 5.0e-67 257.7 133 89.5
Carub.0008s0607 Capsella rubella HOM05D006442 ORTHO05D007980 6.1e-65 250.8 135 85.2
AT5G42850 Arabidopsis thaliana HOM05D006442 ORTHO05D007980 2.3e-64 248.8 135 85.2
CARHR181310 Cardamine hirsuta HOM05D006442 ORTHO05D007980 2.3e-64 248.8 135 85.9
Aa31LG8G5740 Aethionema arabicum HOM05D000097 ORTHO05D000041 7.0e-53 210.7 133 72.2
THA.LOC104823024 Tarenaya hassleriana HOM05D006442 ORTHO05D007980 5.6e-50 201.1 131 71.0
Glyma.15G271700 Glycine max HOM05D006442 ORTHO05D007980 3.4e-47 191.8 131 65.6
Glyma.08G151500 Glycine max HOM05D006442 ORTHO05D007980 4.4e-47 191.4 131 65.6
CSS0016496 Camellia sinensis var. sinensis HOM05D006442 ORTHO05D007980 1.7e-46 189.5 131 67.2
CSS0031684 Camellia sinensis var. sinensis HOM05D006442 ORTHO05D007980 1.7e-46 189.5 131 67.2
Lj3g0007274 Lotus japonicus HOM05D006442 ORTHO05D007980 1.7e-46 189.5 131 64.9
VMungo1080G0583 Vigna mungo HOM05D006442 ORTHO05D007980 2.9e-46 188.7 131 65.6
MD07G1004900 Malus domestica HOM05D006442 ORTHO05D007980 3.7e-46 188.3 131 65.6
arahy.Tifrunner.gnm1.ann1.9R1925 Arachis hypogaea HOM05D006442 ORTHO05D007980 6.4e-46 187.6 131 64.1
arahy.Tifrunner.gnm1.ann1.A55RA3 Arachis hypogaea HOM05D006442 ORTHO05D007980 6.4e-46 187.6 131 64.1
Prupe.2G007200 Prunus persica HOM05D006442 ORTHO05D007980 1.4e-45 186.4 131 64.9
TPR.G12183 Trifolium pratense HOM05D006442 ORTHO05D007980 1.4e-45 186.4 131 64.1
Medtr3g027090 Medicago truncatula HOM05D006442 ORTHO05D007980 1.9e-45 186.0 131 63.4
Cfa010728 Carpinus fangiana HOM05D006442 ORTHO05D007980 3.2e-45 185.3 131 63.4
Phvul.005G037200 Phaseolus vulgaris HOM05D006442 ORTHO05D007980 4.1e-45 184.9 131 64.1
VMungo1080G0430 Vigna mungo HOM05D006442 ORTHO05D007980 7.1e-45 184.1 130 63.1
HanXRQChr01g0018511 Helianthus annuus HOM05D006442 ORTHO05D007980 2.1e-44 182.6 131 64.9
Haze_03245 Corylus avellana HOM05D006442 ORTHO05D007980 2.7e-44 182.2 131 62.6
FvH4_7g00510 Fragaria vesca HOM05D006442 ORTHO05D007980 2.7e-44 182.2 131 63.4
FAN06G2479 Fragaria x ananassa HOM05D006442 ORTHO05D007980 2.7e-44 182.2 131 63.4
FAN10G1890 Fragaria x ananassa HOM05D006442 ORTHO05D007980 2.7e-44 182.2 131 63.4
Actinidia21568 Actinidia chinensis HOM05D006442 ORTHO05D007980 3.5e-44 181.8 130 62.3
SalBow5G2051 Salvia bowleyana HOM05D006442 ORTHO05D007980 4.6e-44 181.4 131 62.6
GSVIVG01032037001 Vitis vinifera HOM05D006442 ORTHO05D007980 4.6e-44 181.4 131 64.1
FAN03G1462 Fragaria x ananassa HOM05D006442 ORTHO05D007980 6.0e-44 181.0 131 62.6
PGSC0003DMG400026375 Solanum tuberosum HOM05D006442 ORTHO05D007980 6.0e-44 181.0 133 62.4
TWI09G1159 Tripterygium wilfordii HOM05D006442 ORTHO05D007980 6.0e-44 181.0 131 62.6
Atru.chr11.2670 Acer truncatum HOM05D006442 ORTHO05D007980 7.8e-44 180.6 131 61.8
Actinidia20688 Actinidia chinensis HOM05D006442 ORTHO05D007980 7.8e-44 180.6 130 63.1
CAN.G1110.8 Capsicum annuum HOM05D006442 ORTHO05D007980 7.8e-44 180.6 130 63.1
Migut.N01489 Erythranthe guttata HOM05D006442 ORTHO05D007980 7.8e-44 180.6 131 62.6
Solyc10g037980.2 Solanum lycopersicum HOM05D006442 ORTHO05D007980 7.8e-44 180.6 130 63.8
Potri.001G225500 Populus trichocarpa HOM05D006442 ORTHO05D007980 1.0e-43 180.3 131 61.8
Manes.10G148300 Manihot esculenta HOM05D006442 ORTHO05D007980 1.3e-43 179.9 131 63.4
Peaxi162Scf00045g00327 Petunia axillaris HOM05D006442 ORTHO05D007980 1.3e-43 179.9 130 61.5
Psat5g207000 Pisum sativum HOM05D006442 ORTHO05D007980 1.3e-43 179.9 131 63.4
Rhsim07G0053100 Rhododendron simsii HOM05D006442 ORTHO05D007980 1.3e-43 179.9 130 61.5
Hma1.2p1_0010F.1_g007050 Hydrangea macrophylla HOM05D006442 ORTHO05D007980 2.3e-43 179.1 131 64.1
RcHm_v2.0_Chr1g0314301 Rosa chinensis HOM05D006442 ORTHO05D007980 2.3e-43 179.1 131 62.6
Ciclev10033058m.g Citrus clementina HOM05D006442 ORTHO05D007980 3.0e-43 178.7 131 61.8
Dinv43911 Davidia involucrata HOM05D006442 ORTHO05D007980 3.0e-43 178.7 131 61.8
ECA248G1263 Erigeron canadensis HOM05D006442 ORTHO05D007980 3.0e-43 178.7 131 63.4
Oeu064276.1 Olea europaea HOM05D006442 ORTHO05D007980 5.1e-43 177.9 131 61.1
Nitab4.5_0002012g0020 Nicotiana tabacum HOM05D006442 ORTHO05D007980 8.6e-43 177.2 130 62.3
Sopen10g011600 Solanum pennellii HOM05D006442 ORTHO05D007980 8.6e-43 177.2 130 63.1
CANSAT01G1452 Cannabis sativa HOM05D006442 ORTHO05D007980 1.1e-42 176.8 131 61.1
Sabra16G0134100 Salix brachista HOM05D006442 ORTHO05D007980 1.1e-42 176.8 131 61.1
Eucgr.G03402 Eucalyptus grandis HOM05D006442 ORTHO05D007980 1.5e-42 176.4 131 60.3
Lsat_1_v5_gn_8_7620 Lactuca sativa HOM05D006442 ORTHO05D007980 1.5e-42 176.4 131 62.6
Ah.16g101020 Amaranthus hybridus HOM05D006442 ORTHO05D007980 2.5e-42 175.6 133 60.2
CiPaw.12G060500 Carya illinoinensis HOM05D006442 ORTHO05D007980 2.5e-42 175.6 130 61.5
MSTRG.28085 Avicennia marina HOM05D006442 ORTHO05D007980 3.3e-42 175.3 131 62.6
PGR042G3140 Punica granatum HOM05D006442 ORTHO05D007980 3.3e-42 175.3 131 58.0
Sed0019847 Sechium edule HOM05D006442 ORTHO05D007980 4.3e-42 174.9 132 60.6
AUR62009476 Chenopodium quinoa HOM05D006442 ORTHO05D007980 5.6e-42 174.5 133 60.2
Phvul.005G038700 Phaseolus vulgaris HOM05D006442 ORTHO05D007980 5.6e-42 174.5 130 60.8
PSO384G2221 Papaver somniferum HOM05D006442 ORTHO05D007980 9.5e-42 173.7 131 60.3
Cc02_g27370 Coffea canephora HOM05D006442 ORTHO05D007980 1.2e-41 173.3 131 60.3
PSO339G0425 Papaver somniferum HOM05D006442 ORTHO05D007980 2.1e-41 172.6 131 60.3
Nn7g36056 Nelumbo nucifera HOM05D006442 ORTHO05D007980 2.8e-41 172.2 131 59.5
Sc14g0005190 Simmondsia chinensis HOM05D006442 ORTHO05D007980 3.6e-41 171.8 135 57.8
AUR62023154 Chenopodium quinoa HOM05D006442 ORTHO05D007980 4.7e-41 171.4 130 60.0
SGA_v2.0_scaffold4G02243 Striga asiatica HOM05D006442 ORTHO05D007980 4.7e-41 171.4 131 61.1
Gohir.D09G099100 Gossypium hirsutum HOM05D006442 ORTHO05D007980 6.2e-41 171.0 133 60.2
Gorai.006G116100 Gossypium raimondii HOM05D006442 ORTHO05D007980 6.2e-41 171.0 133 60.2
Cc02_g27340 Coffea canephora HOM05D006442 ORTHO05D007980 8.1e-41 170.6 131 58.8
Oeu013593.2 Olea europaea HOM05D006442 ORTHO05D007980 8.1e-41 170.6 131 58.0
TAR633G2790 Trochodendron aralioides HOM05D006442 ORTHO05D007980 1.1e-40 170.2 130 58.5
Duzib133G0004 Durio zibethinus HOM05D006442 ORTHO05D007980 1.8e-40 169.5 133 57.9
Aqoxy1G00188 Aquilegia oxysepala HOM05D006442 ORTHO05D007980 2.3e-40 169.1 130 60.8
Gohir.A09G099700 Gossypium hirsutum HOM05D006442 ORTHO05D007980 4.0e-40 168.3 133 58.6
SGA_v2.0_scaffold10G05439 Striga asiatica HOM05D006442 ORTHO05D007980 5.2e-40 167.9 131 59.5
DCAR_006304 Daucus carota HOM05D006442 ORTHO05D007980 8.9e-40 167.2 131 60.3
Nn2g15582 Nelumbo nucifera HOM05D006442 ORTHO05D007980 2.6e-39 165.6 130 59.2
CDE07G0477 Ceratophyllum demersum HOM05D006442 ORTHO05D007980 4.4e-39 164.9 135 54.8
Atru.chr11.2672 Acer truncatum HOM05D006442 ORTHO05D007980 5.8e-39 164.5 122 61.5
AUR62009477 Chenopodium quinoa HOM05D006442 ORTHO05D007980 7.6e-39 164.1 133 57.1
Lalb_Chr25g0283271 Lupinus albus HOM05D006442 ORTHO05D007980 9.9e-39 163.7 131 55.0
CAN.G1076.12 Capsicum annuum HOM05D006442 ORTHO05D007980 2.2e-38 162.5 130 59.2
COL.COLO4_23906 Corchorus olitorius HOM05D006442 ORTHO05D007980 2.9e-38 162.2 135 58.5
unitig_22.g5766 Utricularia gibba HOM05D006442 ORTHO05D007980 2.9e-38 162.2 131 56.5
QL04p004786 Quercus lobata HOM05D006442 ORTHO05D007980 3.8e-38 161.8 174 46.6
EL10Ac2g04436 Beta vulgaris HOM05D006442 ORTHO05D007980 4.9e-38 161.4 133 54.9
AUR62023155 Chenopodium quinoa HOM05D006442 ORTHO05D007980 2.4e-37 159.1 130 58.5
Thecc.01G414800 Theobroma cacao HOM05D006442 ORTHO05D007980 7.1e-37 157.5 133 58.6
SEGI_10267 Sequoiadendron giganteum HOM05D006442 ORTHO05D007980 1.2e-36 156.8 130 52.3
Glyma.08G152300 Glycine max HOM05D006442 ORTHO05D007980 2.3e-35 152.5 86 69.8
Ca_27853_v3 Cicer arietinum L. HOM05D006442 ORTHO05D007980 4.3e-34 148.3 225 38.2
ATR0605G011 Amborella trichopoda HOM05D006442 ORTHO05D007980 6.9e-32 141.0 130 50.8
AagrBONN_evm.TU.Sc2ySwM_117.1593 Anthoceros agrestis HOM05D006442 ORTHO05D007980 6.9e-32 141.0 98 59.2
HPP92_018950 Vanilla planifolia HOM05D006442 ORTHO05D007980 2.0e-31 139.4 126 49.2
MBI01_g15755_MAGBIO Magnolia biondii HOM05D006442 ORTHO05D007980 3.4e-31 138.7 90 67.8
SMO244G0064 Selaginella moellendorffii HOM05D006442 ORTHO05D007980 5.8e-31 137.9 125 48.0
CsaV3_3G032370 Cucumis sativus L. HOM05D006442 ORTHO05D007980 4.9e-30 134.8 82 70.7
Os06g0320000 Oryza sativa ssp. japonica HOM05D006442 ORTHO05D007980 8.4e-30 134.0 131 44.3
Mapoly0028s0130 Marchantia polymorpha HOM05D006442 ORTHO05D007980 1.4e-29 133.3 112 50.9
Zm00001eb381670 Zea mays HOM05D006442 ORTHO05D007980 1.4e-29 133.3 133 46.6
vmacro13638 Vaccinium macrocarpon HOM05D006442 ORTHO05D007980 2.7e-28 129.0 81 66.7
Pp3c1_3150 Physcomitrium patens HOM05D006442 ORTHO05D007980 6.0e-28 127.9 114 49.1
Nitab4.5_0004606g0020 Nicotiana tabacum HOM05D006442 ORTHO05D007980 6.6e-27 124.4 79 65.8
Aa31LG8G5750 Aethionema arabicum HOM05D006442 ORTHO05D007980 4.3e-26 121.7 133 50.4
CAN.G37.7 Capsicum annuum HOM05D006442 ORTHO05D007980 3.4e-23 112.1 103 50.5
CBR_g40140 Chara braunii HOM05D006442 ORTHO05D007980 3.4e-23 112.1 102 50.0
MD02G1317000 Malus domestica HOM05D006442 ORTHO05D007980 4.9e-22 108.2 64 70.3
ClCG10G012580 Citrullus lanatus HOM05D002156 ORTHO05D002328 4.2e-21 105.1 66 65.2
AL8G12830 Arabidopsis lyrata HOM05D006442 ORTHO05D007980 3.6e-17 92.0 53 79.2
AL5G40550 Arabidopsis lyrata HOM05D006442 ORTHO05D007980 1.7e-14 83.2 47 80.9
CAN.G290.22 Capsicum annuum HOM05D006442 ORTHO05D007980 1.7e-14 83.2 52 57.7
MD01G1062200 Malus domestica HOM05D006442 ORTHO05D007980 2.4e-13 79.3 73 58.9
Cre07.g315100 Chlamydomonas reinhardtii HOM05D006442 ORTHO05D007980 3.9e-11 72.0 136 33.8
MD00G1052400 Malus domestica HOM05D006442 ORTHO05D007980 1.0e-06 57.4 47 55.3


User provided reference genes

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