Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g31714 Brassica carinata HOM05D007500 ORTHO05D009197 4.2e-66 254.6 133 100.0
BcaC06g31713 Brassica carinata HOM05D007500 ORTHO05D009197 8.7e-64 246.9 128 100.0
C07p25790 Brassica napus HOM05D007500 ORTHO05D009197 1.2e-60 236.5 128 95.3
BcaC06g34668 Brassica carinata HOM05D007500 ORTHO05D009197 2.5e-58 228.8 130 92.3
BolC7t43101H Brassica oleracea HOM05D007500 ORTHO05D009197 2.5e-58 228.8 130 92.3
A06p47960 Brassica napus HOM05D007500 ORTHO05D009197 3.6e-57 224.9 129 90.7
BraA06t27666Z Brassica rapa HOM05D007500 ORTHO05D009197 3.6e-57 224.9 129 90.7
Sp2g08040 Schrenkiella parvula HOM05D007500 ORTHO05D009197 9.7e-55 216.9 124 88.7
Thhalv10003290m.g Eutrema salsugineum HOM05D007500 ORTHO05D009197 4.8e-54 214.5 122 89.3
AT5G43250 Arabidopsis thaliana HOM05D007500 ORTHO05D009197 4.7e-49 198.0 130 80.8
AL8G17240 Arabidopsis lyrata HOM05D007500 ORTHO05D009197 6.1e-49 197.6 129 79.1
CARHR180640 Cardamine hirsuta HOM05D007500 ORTHO05D009197 1.4e-48 196.4 130 80.0
Carub.0008s0545 Capsella rubella HOM05D007500 ORTHO05D009197 7.7e-44 180.6 134 74.6
Aa31LG9G13320 Aethionema arabicum HOM05D007500 ORTHO05D009197 3.6e-41 171.8 134 70.9
arahy.Tifrunner.gnm1.ann1.Z93F9T Arachis hypogaea HOM05D007500 ORTHO05D009197 4.5e-36 154.8 138 63.0
THA.LOC104814194 Tarenaya hassleriana HOM05D007500 ORTHO05D009197 4.5e-36 154.8 127 64.6
Atru.chr11.2314 Acer truncatum HOM05D007500 ORTHO05D009197 2.2e-35 152.5 128 64.8
Duzib268G0307 Durio zibethinus HOM05D007500 ORTHO05D009197 2.2e-35 152.5 131 63.4
Cfa009364 Carpinus fangiana HOM05D007500 ORTHO05D009197 3.8e-35 151.8 131 64.9
COL.COLO4_20391 Corchorus olitorius HOM05D007500 ORTHO05D009197 3.8e-35 151.8 131 63.4
Dinv14836 Davidia involucrata HOM05D007500 ORTHO05D009197 3.8e-35 151.8 133 63.9
Gohir.D02G150000 Gossypium hirsutum HOM05D007500 ORTHO05D009197 3.8e-35 151.8 131 62.6
Gorai.005G168300 Gossypium raimondii HOM05D007500 ORTHO05D009197 3.8e-35 151.8 131 62.6
Haze_12411 Corylus avellana HOM05D007500 ORTHO05D009197 6.5e-35 151.0 134 64.9
Potri.001G055000 Populus trichocarpa HOM05D007500 ORTHO05D009197 6.5e-35 151.0 128 65.6
CSS0001813 Camellia sinensis var. sinensis HOM05D007500 ORTHO05D009197 8.5e-35 150.6 119 67.2
Gohir.A03G126600 Gossypium hirsutum HOM05D007500 ORTHO05D009197 8.5e-35 150.6 131 63.4
Sabra01G0039500 Salix brachista HOM05D007500 ORTHO05D009197 8.5e-35 150.6 124 65.3
CANSAT01G0539 Cannabis sativa HOM05D007500 ORTHO05D009197 2.5e-34 149.1 127 66.1
QL93p2010_0098 Quercus lobata HOM05D007500 ORTHO05D009197 3.2e-34 148.7 129 64.3
Lsat_1_v5_gn_8_131281 Lactuca sativa HOM05D007500 ORTHO05D009197 1.2e-33 146.7 132 61.4
QL03p052860 Quercus lobata HOM05D007500 ORTHO05D009197 1.6e-33 146.4 129 63.6
QL03p053117 Quercus lobata HOM05D007500 ORTHO05D009197 1.6e-33 146.4 129 63.6
Thecc.02G209700 Theobroma cacao HOM05D007500 ORTHO05D009197 1.6e-33 146.4 125 63.2
Cpa.g.sc43.48 Carica papaya HOM05D007500 ORTHO05D009197 3.6e-33 145.2 133 60.9
PGSC0003DMG400029106 Solanum tuberosum HOM05D007500 ORTHO05D009197 4.7e-33 144.8 121 63.6
Aqoxy6G00433 Aquilegia oxysepala HOM05D007500 ORTHO05D009197 8.0e-33 144.1 122 63.1
Ciclev10033679m.g Citrus clementina HOM05D007500 ORTHO05D009197 8.0e-33 144.1 132 60.6
Sopen05g010600 Solanum pennellii HOM05D007500 ORTHO05D009197 8.0e-33 144.1 122 63.1
TAR381G0854 Trochodendron aralioides HOM05D007500 ORTHO05D009197 8.0e-33 144.1 128 61.7
Solyc05g015330.1 Solanum lycopersicum HOM05D007500 ORTHO05D009197 1.8e-32 142.9 122 63.1
CiPaw.05G110500 Carya illinoinensis HOM05D007500 ORTHO05D009197 2.3e-32 142.5 132 62.1
PGR102G0196 Punica granatum HOM05D007500 ORTHO05D009197 2.3e-32 142.5 130 61.5
Manes.12G012100 Manihot esculenta HOM05D007500 ORTHO05D009197 3.0e-32 142.1 127 63.8
Nitab4.5_0001404g0040 Nicotiana tabacum HOM05D007500 ORTHO05D009197 4.0e-32 141.7 121 62.0
Peaxi162Scf00128g00124 Petunia axillaris HOM05D007500 ORTHO05D009197 1.2e-31 140.2 121 61.2
Nn5g28851 Nelumbo nucifera HOM05D007500 ORTHO05D009197 1.5e-31 139.8 127 62.2
MELO3C011458.2 Cucumis melo HOM05D007500 ORTHO05D009197 3.4e-31 138.7 129 62.8
Ca_16464_v3 Cicer arietinum L. HOM05D007500 ORTHO05D009197 4.4e-31 138.3 131 60.3
ClCG08G010070 Citrullus lanatus HOM05D007500 ORTHO05D009197 5.7e-31 137.9 129 63.6
ECA233G2547 Erigeron canadensis HOM05D007500 ORTHO05D009197 7.5e-31 137.5 104 67.3
Glyma.18G007100 Glycine max HOM05D007500 ORTHO05D009197 7.5e-31 137.5 128 62.5
Sc14g0009050 Simmondsia chinensis HOM05D007500 ORTHO05D009197 7.5e-31 137.5 129 62.0
PSO541G0382 Papaver somniferum HOM05D007500 ORTHO05D009197 9.7e-31 137.1 115 61.7
Sed0012176 Sechium edule HOM05D007500 ORTHO05D009197 1.3e-30 136.7 128 60.2
AUR62024115 Chenopodium quinoa HOM05D007500 ORTHO05D009197 2.8e-30 135.6 127 58.3
DCAR_031200 Daucus carota HOM05D007500 ORTHO05D009197 4.8e-30 134.8 120 60.0
CsaV3_6G032240 Cucumis sativus L. HOM05D007500 ORTHO05D009197 6.3e-30 134.4 130 62.3
TWI18G0612 Tripterygium wilfordii HOM05D007500 ORTHO05D009197 6.3e-30 134.4 137 55.5
Nitab4.5_0000861g0040 Nicotiana tabacum HOM05D007500 ORTHO05D009197 8.3e-30 134.0 114 64.0
Cc11_g16840 Coffea canephora HOM05D007500 ORTHO05D009197 1.1e-29 133.7 121 59.5
EL10Ac6g13495 Beta vulgaris HOM05D007500 ORTHO05D009197 1.8e-29 132.9 139 58.3
Phvul.001G261300 Phaseolus vulgaris HOM05D007500 ORTHO05D009197 1.8e-29 132.9 129 61.2
VMungo1383G3421 Vigna mungo HOM05D007500 ORTHO05D009197 1.8e-29 132.9 128 60.9
Migut.K00728 Erythranthe guttata HOM05D007500 ORTHO05D009197 2.4e-29 132.5 128 57.0
MSTRG.7998 Avicennia marina HOM05D007500 ORTHO05D009197 3.1e-29 132.1 136 55.9
Glyma.11G250000 Glycine max HOM05D007500 ORTHO05D009197 5.3e-29 131.3 128 59.4
Lj6g0001546 Lotus japonicus HOM05D007500 ORTHO05D009197 5.3e-29 131.3 128 57.0
Psat5g095440 Pisum sativum HOM05D007500 ORTHO05D009197 9.1e-29 130.6 136 56.6
Medtr3g085430 Medicago truncatula HOM05D007500 ORTHO05D009197 3.5e-28 128.6 135 57.0
Lalb_Chr08g0230661 Lupinus albus HOM05D007500 ORTHO05D009197 7.7e-28 127.5 132 55.3
FAN17G2194 Fragaria x ananassa HOM05D007500 ORTHO05D009197 1.3e-27 126.7 123 59.3
FAN22G1415 Fragaria x ananassa HOM05D007500 ORTHO05D009197 1.7e-27 126.3 123 59.3
MBI01_g29007_MAGBIO Magnolia biondii HOM05D007500 ORTHO05D009197 1.7e-27 126.3 129 55.8
HanXRQChr09g0258281 Helianthus annuus HOM05D007500 ORTHO05D009197 2.2e-27 125.9 132 53.8
CAN.G43.17 Capsicum annuum HOM05D007500 ORTHO05D009197 2.9e-27 125.6 105 61.9
AUR62005615 Chenopodium quinoa HOM05D007500 ORTHO05D009197 2.9e-27 125.6 121 58.7
Actinidia30653 Actinidia chinensis HOM05D007500 ORTHO05D009197 6.5e-27 124.4 102 67.6
Prupe.1G226700 Prunus persica HOM05D007500 ORTHO05D009197 6.5e-27 124.4 139 53.2
FAN07G2442 Fragaria x ananassa HOM05D007500 ORTHO05D009197 1.1e-26 123.6 123 58.5
SalBow2G0500 Salvia bowleyana HOM05D007500 ORTHO05D009197 1.1e-26 123.6 107 60.7
SGA_v2.0_scaffold9G04716 Striga asiatica HOM05D007500 ORTHO05D009197 1.1e-26 123.6 126 54.0
FAN12G0274 Fragaria x ananassa HOM05D007500 ORTHO05D009197 1.6e-25 119.8 129 53.5
Rhsim12G0026300 Rhododendron simsii HOM05D007500 ORTHO05D009197 1.6e-25 119.8 113 56.6
TPR.G28279 Trifolium pratense HOM05D007500 ORTHO05D009197 2.7e-25 119.0 95 65.3
FvH4_4g23840 Fragaria vesca HOM05D007500 ORTHO05D009197 4.7e-25 118.2 129 52.7
PSO675G4883 Papaver somniferum HOM05D007500 ORTHO05D009197 1.0e-24 117.1 105 61.0
Ah.03g136190 Amaranthus hybridus HOM05D007500 ORTHO05D009197 1.4e-24 116.7 129 52.7
unitig_26.g10395 Utricularia gibba HOM05D007500 ORTHO05D009197 2.0e-23 112.8 127 50.4
RcHm_v2.0_Chr4g0430411 Rosa chinensis HOM05D007500 ORTHO05D009197 2.6e-23 112.5 112 58.0
MD16G1118400 Malus domestica HOM05D007500 ORTHO05D009197 1.3e-22 110.2 122 50.8
CDE06G2379 Ceratophyllum demersum HOM05D007500 ORTHO05D009197 2.8e-22 109.0 125 49.6
MD13G1118300 Malus domestica HOM05D007500 ORTHO05D009197 6.3e-22 107.8 122 50.0
ATR1120G099 Amborella trichopoda HOM05D007500 ORTHO05D009197 5.4e-21 104.8 115 52.2
HPP92_002864 Vanilla planifolia HOM05D007500 ORTHO05D009197 1.7e-19 99.8 92 54.3
Zm00001eb122050 Zea mays HOM05D007500 ORTHO05D009197 2.9e-19 99.0 131 45.0
Os01g0183400 Oryza sativa ssp. japonica HOM05D007500 ORTHO05D009197 2.6e-15 85.9 117 42.7
SEGI_35529 Sequoiadendron giganteum HOM05D007500 ORTHO05D009197 5.0e-11 71.6 82 43.9
CAN.G1248.23 Capsicum annuum HOM05D000764 ORTHO05D009197 1.5e-10 70.1 45 71.1
Pp3c13_23370 Physcomitrium patens HOM05D020496 ORTHO05D009197 5.2e-08 61.6 66 47.0
Pp3c13_23373 Physcomitrium patens HOM05D020496 ORTHO05D009197 5.2e-08 61.6 66 47.0
HPP92_002807 Vanilla planifolia HOM05D007500 ORTHO05D009197 9.8e-07 57.4 74 50.0
CDE04G1622 Ceratophyllum demersum HOM05D002489 ORTHO05D002653 6.4e-06 54.7 77 40.3


User provided reference genes

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