Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g31675 Brassica carinata HOM05D006640 ORTHO05D008078 9.4e-107 390.2 196 100.0
BcaC06g34624 Brassica carinata HOM05D006640 ORTHO05D008078 9.7e-104 380.2 196 97.4
BraA06t27635Z Brassica rapa HOM05D006640 ORTHO05D008078 1.1e-102 376.7 196 96.4
Thhalv10003275m.g Eutrema salsugineum HOM05D006640 ORTHO05D008078 1.0e-89 333.6 196 85.7
AL8G16350 Arabidopsis lyrata HOM05D006640 ORTHO05D008078 9.5e-83 310.5 196 79.1
AT5G43822 Arabidopsis thaliana HOM05D006640 ORTHO05D008078 3.6e-82 308.5 196 78.1
Carub.0008s0481 Capsella rubella HOM05D006640 ORTHO05D008078 1.5e-80 303.1 196 77.0
CARHR179670 Cardamine hirsuta HOM05D006640 ORTHO05D008078 1.5e-80 303.1 196 77.6
Sp2g08620 Schrenkiella parvula HOM05D006218 ORTHO05D007338 9.5e-75 283.9 193 76.2
Aa31LG9G12490 Aethionema arabicum HOM05D006640 ORTHO05D008078 6.4e-71 271.2 196 69.9
THA.LOC104820569 Tarenaya hassleriana HOM05D006640 ORTHO05D008078 1.2e-61 240.4 197 64.5
CSS0000785 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 3.6e-58 228.8 197 57.9
CiPaw.07G136100 Carya illinoinensis HOM05D006640 ORTHO05D008078 1.8e-57 226.5 197 55.3
GSVIVG01013394001 Vitis vinifera HOM05D006640 ORTHO05D008078 5.8e-56 221.5 197 56.3
Manes.13G069100 Manihot esculenta HOM05D006640 ORTHO05D008078 1.7e-55 219.9 197 56.3
Gorai.006G062900 Gossypium raimondii HOM05D006640 ORTHO05D008078 2.4e-54 216.1 203 55.2
Lj6g0027905 Lotus japonicus HOM05D006640 ORTHO05D008078 3.2e-54 215.7 199 53.8
QL02p015123 Quercus lobata HOM05D006640 ORTHO05D008078 3.2e-54 215.7 197 53.8
Eucgr.F01788 Eucalyptus grandis HOM05D006640 ORTHO05D008078 5.4e-54 214.9 197 54.8
Thecc.03G029100 Theobroma cacao HOM05D006640 ORTHO05D008078 5.4e-54 214.9 197 55.3
CAN.G1138.9 Capsicum annuum HOM05D006640 ORTHO05D008078 7.1e-54 214.5 198 56.6
Atru.chr3.582 Acer truncatum HOM05D006640 ORTHO05D008078 1.6e-53 213.4 197 55.8
Sopen04g036190 Solanum pennellii HOM05D006640 ORTHO05D008078 4.6e-53 211.8 198 54.5
Haze_19181 Corylus avellana HOM05D006640 ORTHO05D008078 7.8e-53 211.1 197 52.3
Potri.005G253200 Populus trichocarpa HOM05D006640 ORTHO05D008078 7.8e-53 211.1 199 53.8
Migut.E01492 Erythranthe guttata HOM05D006640 ORTHO05D008078 3.9e-52 208.8 200 54.0
Gohir.A09G046800 Gossypium hirsutum HOM05D006640 ORTHO05D008078 3.9e-52 208.8 203 53.2
Ciclev10002549m.g Citrus clementina HOM05D006640 ORTHO05D008078 6.6e-52 208.0 197 52.8
MSTRG.990 Avicennia marina HOM05D006640 ORTHO05D008078 8.7e-52 207.6 200 52.5
Cc10_g14910 Coffea canephora HOM05D006640 ORTHO05D008078 1.1e-51 207.2 200 55.0
Hund21079 Selenicereus undatus HOM05D006640 ORTHO05D008078 1.9e-51 206.5 196 55.6
COL.COLO4_07395 Corchorus olitorius HOM05D006640 ORTHO05D008078 3.3e-51 205.7 196 53.1
MD15G1440200 Malus domestica HOM05D006640 ORTHO05D008078 3.3e-51 205.7 198 54.5
Solyc04g082560.4 Solanum lycopersicum HOM05D001842 ORTHO05D001849 5.6e-51 204.9 198 53.0
Solyc08g069130.1 Solanum lycopersicum HOM05D006640 ORTHO05D008078 5.6e-51 204.9 198 53.0
EL10Ac3g05131 Beta vulgaris HOM05D006640 ORTHO05D008078 7.3e-51 204.5 197 54.8
vmacro05542 Vaccinium macrocarpon HOM05D006640 ORTHO05D008078 1.2e-50 203.8 184 56.0
SalBow1G3286 Salvia bowleyana HOM05D006640 ORTHO05D008078 3.6e-50 202.2 200 52.0
Oeu011315.3 Olea europaea HOM05D006640 ORTHO05D008078 4.7e-50 201.8 205 54.1
TAR625G0363 Trochodendron aralioides HOM05D006640 ORTHO05D008078 4.7e-50 201.8 197 50.8
Lalb_Chr01g0007731 Lupinus albus HOM05D006640 ORTHO05D008078 6.2e-50 201.4 197 50.8
Medtr4g032370 Medicago truncatula HOM05D006640 ORTHO05D008078 8.1e-50 201.1 198 52.0
Peaxi162Scf00680g00119 Petunia axillaris HOM05D006640 ORTHO05D008078 1.4e-49 200.3 198 54.0
SalBow7G4342 Salvia bowleyana HOM05D006640 ORTHO05D008078 1.4e-49 200.3 200 52.0
Prupe.5G009200 Prunus persica HOM05D006640 ORTHO05D008078 2.4e-49 199.5 198 52.0
Duzib205G0266 Durio zibethinus HOM05D006640 ORTHO05D008078 5.3e-49 198.4 185 55.7
FAN04G1358 Fragaria x ananassa HOM05D006640 ORTHO05D008078 5.8e-48 194.9 198 51.0
FAN18G3620 Fragaria x ananassa HOM05D006640 ORTHO05D008078 1.3e-47 193.7 198 51.0
FvH4_5g25620 Fragaria vesca HOM05D006640 ORTHO05D008078 2.2e-47 193.0 198 51.0
Medtr1g103240 Medicago truncatula HOM05D006640 ORTHO05D008078 2.9e-47 192.6 197 49.2
TPR.G34155 Trifolium pratense HOM05D006640 ORTHO05D008078 2.9e-47 192.6 198 49.0
SGA_v2.0_scaffold184G39969 Striga asiatica HOM05D006640 ORTHO05D008078 1.9e-46 189.9 198 51.0
Ca_19713_v3 Cicer arietinum L. HOM05D006640 ORTHO05D008078 4.2e-46 188.7 236 42.8
Psat7g226480 Pisum sativum HOM05D006640 ORTHO05D008078 1.2e-45 187.2 198 48.0
RcHm_v2.0_Chr7g0215911 Rosa chinensis HOM05D006640 ORTHO05D008078 1.2e-45 187.2 198 50.0
Glyma.08G337400 Glycine max HOM05D001876 ORTHO05D002002 2.1e-45 186.4 199 47.7
COL.COLO4_22727 Corchorus olitorius HOM05D006640 ORTHO05D008078 3.5e-45 185.7 185 50.8
Cfa020797 Carpinus fangiana HOM05D006640 ORTHO05D008078 4.6e-45 185.3 187 49.2
Cfa010319 Carpinus fangiana HOM05D006640 ORTHO05D008078 6.0e-45 184.9 187 48.7
CSS0036253 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 7.8e-45 184.5 184 52.2
CSS0028139 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 2.3e-44 183.0 197 49.2
CANSAT54G1336 Cannabis sativa HOM05D006640 ORTHO05D008078 1.1e-43 180.6 196 46.9
ECA232G3411 Erigeron canadensis HOM05D006640 ORTHO05D008078 1.1e-43 180.6 197 48.2
ATR0807G089 Amborella trichopoda HOM05D006640 ORTHO05D008078 1.9e-43 179.9 199 47.7
Aqoxy6G01598 Aquilegia oxysepala HOM05D006640 ORTHO05D008078 2.5e-43 179.5 196 45.9
Hma1.2p1_0612F.1_g188900 Hydrangea macrophylla HOM05D006640 ORTHO05D008078 3.3e-43 179.1 154 57.1
Rhsim08G0078300 Rhododendron simsii HOM05D006640 ORTHO05D008078 4.3e-43 178.7 184 50.5
HanXRQChr05g0147651 Helianthus annuus HOM05D006640 ORTHO05D008078 9.6e-43 177.6 197 46.7
SalBow6G0872 Salvia bowleyana HOM05D006640 ORTHO05D008078 2.1e-42 176.4 190 48.9
Dinv27390 Davidia involucrata HOM05D006640 ORTHO05D008078 2.8e-42 176.0 167 52.7
FAN08G2005 Fragaria x ananassa HOM05D006640 ORTHO05D008078 3.6e-42 175.6 195 47.7
PGR083G0938 Punica granatum HOM05D006640 ORTHO05D008078 3.6e-42 175.6 197 47.7
ClCG02G003390 Citrullus lanatus HOM05D006640 ORTHO05D008078 8.1e-42 174.5 199 46.7
Glyma.08G337600 Glycine max HOM05D003402 ORTHO05D003939 8.1e-42 174.5 184 47.3
HanXRQChr02g0057271 Helianthus annuus HOM05D006640 ORTHO05D008078 8.1e-42 174.5 197 46.7
DCAR_013930 Daucus carota HOM05D006640 ORTHO05D008078 3.1e-41 172.6 206 46.1
CDE02G0900 Ceratophyllum demersum HOM05D006640 ORTHO05D008078 5.3e-41 171.8 199 44.7
MBI06_g19633_MAGBIO Magnolia biondii HOM05D006640 ORTHO05D008078 1.3e-39 167.2 179 49.7
MELO3C013247.2 Cucumis melo HOM05D006640 ORTHO05D008078 2.2e-39 166.4 199 45.2
CsaV3_7G001930 Cucumis sativus L. HOM05D006640 ORTHO05D008078 2.2e-39 166.4 199 44.7
Cpa.g.sc26.165 Carica papaya HOM05D006640 ORTHO05D008078 2.9e-39 166.0 184 46.7
AUR62005948 Chenopodium quinoa HOM05D006640 ORTHO05D008078 1.1e-38 164.1 184 47.3
Os10g0566900 Oryza sativa ssp. japonica HOM05D006640 ORTHO05D008078 1.1e-38 164.1 196 44.4
PSO541G3394 Papaver somniferum HOM05D006640 ORTHO05D008078 1.2e-37 160.6 202 44.1
PSO675G3428 Papaver somniferum HOM05D006640 ORTHO05D008078 2.7e-37 159.5 202 44.1
unitig_46.g18025 Utricularia gibba HOM05D006640 ORTHO05D008078 2.7e-37 159.5 204 42.2
MD08G1245100 Malus domestica HOM05D006640 ORTHO05D008078 4.6e-37 158.7 163 49.7
Phvul.008G111000 Phaseolus vulgaris HOM05D006640 ORTHO05D008078 7.9e-37 157.9 184 42.9
Ah.13g071040 Amaranthus hybridus HOM05D006277 ORTHO05D008078 5.1e-36 155.2 160 48.1
FAN13G1910 Fragaria x ananassa HOM05D006640 ORTHO05D008078 1.1e-35 154.1 232 39.2
Lsat_1_v5_gn_9_28760 Lactuca sativa HOM05D006640 ORTHO05D008078 1.4e-33 147.1 184 42.4
Lsat_1_v5_gn_0_27580 Lactuca sativa HOM05D006640 ORTHO05D008078 6.9e-33 144.8 197 41.1
AUR62028117 Chenopodium quinoa HOM05D006640 ORTHO05D008078 9.9e-32 141.0 176 44.9
SHI14582 Sapria himalayana HOM05D006640 ORTHO05D008078 3.8e-31 139.0 155 47.7
Mapoly0033s0101 Marchantia polymorpha HOM05D006640 ORTHO05D008078 8.4e-31 137.9 199 39.7
Nn5g31001 Nelumbo nucifera HOM05D006640 ORTHO05D008078 1.1e-30 137.5 143 51.7
Pp3c20_21140 Physcomitrium patens HOM05D000227 ORTHO05D008078 1.4e-30 137.1 182 42.3
VMungo0540G0999 Vigna mungo HOM05D006640 ORTHO05D008078 1.6e-29 133.7 145 47.6
Sabra05G0196400 Salix brachista HOM05D006640 ORTHO05D008078 2.7e-29 132.9 186 40.9
HPP92_007449 Vanilla planifolia HOM05D006640 ORTHO05D008078 1.0e-28 131.0 182 37.9
Phvul.006G070300 Phaseolus vulgaris HOM05D006640 ORTHO05D008078 4.3e-27 125.6 139 47.5
Nitab4.5_0001208g0130 Nicotiana tabacum HOM05D006640 ORTHO05D008078 1.3e-26 124.0 115 59.1
Sed0007887 Sechium edule HOM05D006640 ORTHO05D008078 2.4e-25 119.8 140 45.7
CSS0011114 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 1.2e-24 117.5 144 43.1
Gohir.D09G047201 Gossypium hirsutum HOM05D006640 ORTHO05D008078 2.0e-24 116.7 110 51.8
Lj4C809G7 Lonicera japonica HOM05D006640 ORTHO05D008078 5.8e-24 115.2 145 42.1
Zm00001eb327920 Zea mays HOM05D006640 ORTHO05D008078 2.9e-23 112.8 155 39.4
Aqoxy2G03352 Aquilegia oxysepala HOM05D006640 ORTHO05D008078 9.3e-22 107.8 128 40.6
Nitab4.5_0000383g0410 Nicotiana tabacum HOM05D006640 ORTHO05D008078 7.9e-21 104.8 101 57.4
Sc24g0000300 Simmondsia chinensis HOM05D006640 ORTHO05D008078 7.9e-21 104.8 116 47.4
Actinidia35855 Actinidia chinensis HOM05D002342 ORTHO05D002407 1.5e-19 100.5 84 57.1
AagrBONN_evm.TU.Sc2ySwM_362.2824 Anthoceros agrestis HOM05D006640 ORTHO05D008078 1.3e-18 97.4 157 38.9
Duzib205G1379 Durio zibethinus HOM05D006640 ORTHO05D008078 6.3e-18 95.1 129 41.1
Nitab4.5_0010095g0020 Nicotiana tabacum HOM05D006640 ORTHO05D008078 5.9e-16 88.6 87 55.2
Cfa015562 Carpinus fangiana HOM05D006640 ORTHO05D008078 2.2e-15 86.7 184 29.9
Peaxi162Scf00139g00094 Petunia axillaris HOM05D006640 ORTHO05D008078 1.6e-13 80.5 81 49.4
RcHm_v2.0_Chr3g0481391 Rosa chinensis HOM05D006640 ORTHO05D008078 1.8e-12 77.0 84 44.0
RcHm_v2.0_Chr3g0481381 Rosa chinensis HOM05D006640 ORTHO05D008078 2.3e-12 76.6 105 37.1
Atru.chr3.42 Acer truncatum HOM05D006640 ORTHO05D008078 6.9e-09 65.1 61 50.8
vmacro03672 Vaccinium macrocarpon HOM05D002991 ORTHO05D003480 9.1e-09 64.7 45 66.7
BcaC04g21903 Brassica carinata HOM05D006640 ORTHO05D008078 1.2e-08 64.3 46 69.6
MCO04G502 Micromonas commoda HOM05D006640 ORTHO05D008078 2.0e-08 63.5 189 24.9
Aqoxy2G03351 Aquilegia oxysepala HOM05D006640 ORTHO05D008078 6.5e-07 58.5 56 53.6


User provided reference genes

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