Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g31621 Brassica carinata HOM05D004964 ORTHO05D005918 2.1e-241 838.6 408 100.0
BraA06t27592Z Brassica rapa HOM05D004964 ORTHO05D005918 3.0e-208 728.4 428 85.3
A06p47210 Brassica napus HOM05D004964 ORTHO05D005918 1.5e-207 726.1 428 85.0
BcaC06g34559 Brassica carinata HOM05D004964 ORTHO05D005918 4.1e-205 718.0 428 84.1
BolC7t43245H Brassica oleracea HOM05D004964 ORTHO05D005918 4.1e-205 718.0 428 84.1
C07p27180 Brassica napus HOM05D004964 ORTHO05D005918 2.7e-204 715.3 428 83.9
Thhalv10000880m.g Eutrema salsugineum HOM05D004964 ORTHO05D005918 1.9e-189 666.0 402 83.3
A09p21080 Brassica napus HOM05D004964 ORTHO05D005918 2.6e-183 645.6 421 78.4
BraA09t37709Z Brassica rapa HOM05D004964 ORTHO05D005918 1.3e-174 616.7 421 76.2
AL1G20790 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 1.2e-172 610.1 425 73.9
Carub.0001s0952 Capsella rubella HOM05D004964 ORTHO05D005918 9.5e-170 600.5 422 73.7
CARHR010210 Cardamine hirsuta HOM05D004964 ORTHO05D005918 2.8e-169 599.0 398 77.4
Sp2g09220 Schrenkiella parvula HOM05D004964 ORTHO05D005918 2.2e-166 589.3 389 76.9
BcaB07g30949 Brassica carinata HOM05D004964 ORTHO05D005918 5.3e-160 568.2 419 71.6
AT1G10095 Arabidopsis thaliana HOM05D004964 ORTHO05D005918 2.0e-159 566.2 385 76.1
AL1G47560 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 5.6e-154 548.1 425 68.7
AL1G47570 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 6.7e-131 471.5 430 61.4
QL03p029942 Quercus lobata HOM05D004964 ORTHO05D005918 2.1e-116 423.3 389 56.0
Manes.08G139500 Manihot esculenta HOM05D004964 ORTHO05D005918 7.9e-116 421.4 426 52.1
RcHm_v2.0_Chr3g0449661 Rosa chinensis HOM05D004964 ORTHO05D005918 1.5e-114 417.2 417 52.3
MD04G1230400 Malus domestica HOM05D004964 ORTHO05D005918 3.3e-114 416.0 419 53.2
QL03p029974 Quercus lobata HOM05D004964 ORTHO05D005918 1.8e-112 410.2 391 55.5
AL1G20660 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 4.5e-111 405.6 418 56.7
Cfa006356 Carpinus fangiana HOM05D004964 ORTHO05D005918 1.3e-110 404.1 403 54.8
FvH4_6g01921 Fragaria vesca HOM05D004964 ORTHO05D005918 1.7e-110 403.7 408 51.5
Gohir.D08G234400 Gossypium hirsutum HOM05D004964 ORTHO05D005918 2.9e-110 402.9 410 54.9
Gorai.004G249200 Gossypium raimondii HOM05D004964 ORTHO05D005918 8.5e-110 401.4 410 54.4
FAN14G2205 Fragaria x ananassa HOM05D004964 ORTHO05D005918 1.1e-109 401.0 402 51.7
Thecc.05G270700 Theobroma cacao HOM05D004964 ORTHO05D005918 3.2e-109 399.4 425 52.5
GSVIVG01023502001 Vitis vinifera HOM05D004964 ORTHO05D005918 1.2e-108 397.5 421 51.3
FAN02G1272 Fragaria x ananassa HOM05D004964 ORTHO05D005918 1.8e-107 393.7 408 51.2
CSS0014360 Camellia sinensis var. sinensis HOM05D004964 ORTHO05D005918 2.3e-107 393.3 432 50.0
Solyc01g111410.3 Solanum lycopersicum HOM05D004964 ORTHO05D005918 1.1e-106 391.0 407 51.6
Cpa.g.sc162.40 Carica papaya HOM05D004964 ORTHO05D005918 2.0e-106 390.2 404 50.5
Sopen01g053470 Solanum pennellii HOM05D004964 ORTHO05D005918 2.0e-106 390.2 407 51.4
CiPaw.07G072600 Carya illinoinensis HOM05D004964 ORTHO05D005918 5.7e-106 388.7 411 52.3
CAN.G588.60 Capsicum annuum HOM05D004964 ORTHO05D005918 7.4e-106 388.3 407 50.4
CARHR222860 Cardamine hirsuta HOM05D004964 ORTHO05D005918 7.4e-106 388.3 248 77.4
PGSC0003DMG401006195 Solanum tuberosum HOM05D004964 ORTHO05D005918 7.4e-106 388.3 407 51.1
Sabra13G0043100 Salix brachista HOM05D004964 ORTHO05D005918 1.7e-105 387.1 406 52.7
QL03p030425 Quercus lobata HOM05D004964 ORTHO05D005918 1.4e-104 384.0 373 54.4
Prupe.6G350300 Prunus persica HOM05D004964 ORTHO05D005918 3.1e-104 382.9 393 50.9
Duzib106G0302 Durio zibethinus HOM05D004964 ORTHO05D005918 7.0e-104 381.7 389 54.0
Lj2A43G39 Lonicera japonica HOM05D004964 ORTHO05D005918 9.1e-104 381.3 430 50.2
Rhsim09G0136900 Rhododendron simsii HOM05D004964 ORTHO05D005918 1.3e-102 377.5 433 48.7
Nn4g26424 Nelumbo nucifera HOM05D004964 ORTHO05D005918 3.2e-101 372.9 425 49.4
TAR362G0358 Trochodendron aralioides HOM05D004964 ORTHO05D005918 9.4e-101 371.3 436 48.9
Gohir.A08G217400 Gossypium hirsutum HOM05D004964 ORTHO05D005918 2.6e-98 363.2 410 52.0
Peaxi162Scf00407g00626 Petunia axillaris HOM05D004964 ORTHO05D005918 4.4e-98 362.5 396 49.5
VMungo0331G1958 Vigna mungo HOM05D004964 ORTHO05D005918 7.5e-98 361.7 431 47.8
BcaC04g21837 Brassica carinata HOM05D004964 ORTHO05D005918 2.8e-97 359.8 293 66.9
Sed0000191 Sechium edule HOM05D004964 ORTHO05D005918 3.1e-96 356.3 405 47.7
MELO3C008708.2 Cucumis melo HOM05D004964 ORTHO05D005918 1.6e-95 354.0 407 47.4
Ciclev10020293m.g Citrus clementina HOM05D004964 ORTHO05D005918 3.5e-95 352.8 391 52.4
Aa31LG1G4780 Aethionema arabicum HOM05D004964 ORTHO05D005918 1.0e-94 351.3 270 68.5
Cc02_g08800 Coffea canephora HOM05D004964 ORTHO05D005918 1.7e-94 350.5 419 46.5
HanXRQChr07g0204481 Helianthus annuus HOM05D004964 ORTHO05D005918 2.2e-94 350.1 409 46.9
EL10Ac2g04577 Beta vulgaris HOM05D004964 ORTHO05D005918 2.9e-94 349.7 408 47.5
FAN05G4025 Fragaria x ananassa HOM05D004964 ORTHO05D005918 2.9e-94 349.7 408 48.3
FAN05G4826 Fragaria x ananassa HOM05D004964 ORTHO05D005918 3.8e-94 349.4 408 48.0
FAN14G5822 Fragaria x ananassa HOM05D004964 ORTHO05D005918 1.9e-93 347.1 408 46.8
Sc10g0001190 Simmondsia chinensis HOM05D004964 ORTHO05D005918 1.9e-93 347.1 400 48.5
Oeu016533.1 Olea europaea HOM05D004964 ORTHO05D005918 2.5e-93 346.7 422 45.5
Lalb_Chr03g0040321 Lupinus albus HOM05D004964 ORTHO05D005918 1.6e-92 344.0 423 45.6
Ca_14064_v3 Cicer arietinum L. HOM05D004964 ORTHO05D005918 3.6e-92 342.8 428 47.4
MBI07_g16903_MAGBIO Magnolia biondii HOM05D004964 ORTHO05D005918 6.1e-92 342.0 436 45.6
Atru.chr2.987 Acer truncatum HOM05D004964 ORTHO05D005918 8.8e-91 338.2 412 47.6
arahy.Tifrunner.gnm1.ann1.J3Q9FM Arachis hypogaea HOM05D004964 ORTHO05D005918 2.6e-90 336.7 421 45.4
arahy.Tifrunner.gnm1.ann1.H9CC2T Arachis hypogaea HOM05D004964 ORTHO05D005918 9.8e-90 334.7 421 45.4
Lsat_1_v5_gn_8_24860 Lactuca sativa HOM05D004964 ORTHO05D005918 1.7e-89 334.0 405 46.7
TPR.G17496 Trifolium pratense HOM05D004964 ORTHO05D005918 2.2e-89 333.6 424 45.0
Phvul.010G051000 Phaseolus vulgaris HOM05D004964 ORTHO05D005918 4.8e-89 332.4 436 45.2
Aqoxy4G00649 Aquilegia oxysepala HOM05D004964 ORTHO05D005918 6.3e-89 332.0 444 43.2
unitig_46.g18500 Utricularia gibba HOM05D004964 ORTHO05D005918 1.4e-88 330.9 412 44.2
unitig_47.g30763 Utricularia gibba HOM05D004964 ORTHO05D005918 1.4e-88 330.9 412 44.2
Aqoxy5G02134 Aquilegia oxysepala HOM05D004964 ORTHO05D005918 3.1e-88 329.7 445 42.5
C09p26820 Brassica napus HOM05D004964 ORTHO05D005918 9.1e-88 328.2 297 62.0
Lj3g0015193 Lotus japonicus HOM05D004964 ORTHO05D005918 7.7e-87 325.1 430 45.1
Nitab4.5_0013387g0040 Nicotiana tabacum HOM05D004964 ORTHO05D005918 1.0e-86 324.7 403 45.9
TPR.G33137 Trifolium pratense HOM05D004964 ORTHO05D005918 1.0e-86 324.7 424 44.6
Glyma.07G113400 Glycine max HOM05D004964 ORTHO05D005918 1.1e-85 321.2 401 48.4
Medtr8g006785 Medicago truncatula HOM05D004964 ORTHO05D005918 1.5e-85 320.9 453 43.5
PSO210G1919 Papaver somniferum HOM05D004964 ORTHO05D005918 1.5e-85 320.9 412 45.4
Migut.F00800 Erythranthe guttata HOM05D004964 ORTHO05D005918 3.3e-85 319.7 392 46.7
Glyma.03G113500 Glycine max HOM05D004964 ORTHO05D005918 9.5e-85 318.2 434 46.1
Psat4g225120 Pisum sativum HOM05D004964 ORTHO05D005918 1.4e-83 314.3 393 46.8
CANSAT01G0497 Cannabis sativa HOM05D004964 ORTHO05D005918 1.8e-83 313.9 365 48.5
DCAR_022832 Daucus carota HOM05D004964 ORTHO05D005918 5.2e-83 312.4 408 44.1
Potri.013G047100 Populus trichocarpa HOM05D004964 ORTHO05D005918 8.9e-83 311.6 279 58.8
AUR62023306 Chenopodium quinoa HOM05D004964 ORTHO05D005918 4.4e-82 309.3 426 41.3
AUR62008995 Chenopodium quinoa HOM05D004964 ORTHO05D005918 8.3e-81 305.1 397 42.3
Dinv18988 Davidia involucrata HOM05D004964 ORTHO05D005918 8.3e-81 305.1 315 53.7
Hund13719 Selenicereus undatus HOM05D004964 ORTHO05D005918 1.1e-80 304.7 406 43.3
Eucgr.H04227 Eucalyptus grandis HOM05D004964 ORTHO05D005918 5.4e-80 302.4 394 44.7
SGA_v2.0_scaffold295G47511 Striga asiatica HOM05D004964 ORTHO05D005918 1.2e-79 301.2 391 45.3
vmacro10367 Vaccinium macrocarpon HOM05D004964 ORTHO05D005918 1.2e-79 301.2 517 38.1
C07p27190 Brassica napus HOM05D004964 ORTHO05D005918 3.5e-79 299.7 221 72.9
BolC7t43246H Brassica oleracea HOM05D004964 ORTHO05D005918 3.5e-79 299.7 221 72.9
CSS0038343 Camellia sinensis var. sinensis HOM05D004964 ORTHO05D005918 7.8e-79 298.5 422 43.1
PSO210G0659 Papaver somniferum HOM05D004964 ORTHO05D005918 4.3e-77 292.7 373 45.6
ATR0736G161 Amborella trichopoda HOM05D004964 ORTHO05D005918 9.5e-77 291.6 402 41.8
ECA233G3630 Erigeron canadensis HOM05D004964 ORTHO05D005918 1.2e-76 291.2 364 45.1
SGA_v2.0_scaffold26G11247 Striga asiatica HOM05D004964 ORTHO05D005918 2.8e-76 290.0 391 44.8
CsaV3_2G009770 Cucumis sativus L. HOM05D004964 ORTHO05D005918 2.6e-74 283.5 302 51.0
Nitab4.5_0005396g0030 Nicotiana tabacum HOM05D004964 ORTHO05D005918 1.3e-73 281.2 365 44.4
MSTRG.14348 Avicennia marina HOM05D004964 ORTHO05D005918 1.7e-73 280.8 423 40.0
COL.COLO4_00075 Corchorus olitorius HOM05D004964 ORTHO05D005918 1.7e-73 280.8 311 51.8
HPP92_003061 Vanilla planifolia HOM05D004964 ORTHO05D005918 2.2e-73 280.4 413 42.9
FAN09G0282 Fragaria x ananassa HOM05D004964 ORTHO05D005918 2.5e-69 266.9 252 55.6
BolC9t55571H Brassica oleracea HOM05D004964 ORTHO05D005918 1.7e-65 254.2 179 70.9
MD12G1248000 Malus domestica HOM05D004964 ORTHO05D005918 1.7e-65 254.2 291 47.8
SGA_v2.0_scaffold177G39428 Striga asiatica HOM05D004964 ORTHO05D005918 1.4e-64 251.1 407 40.0
Hma1.2p1_1512F.1_g287895 Hydrangea macrophylla HOM05D004964 ORTHO05D005918 2.7e-63 246.9 243 56.0
SalBow6G5984 Salvia bowleyana HOM05D004964 ORTHO05D005918 4.6e-63 246.1 464 36.2
Zm00001eb229480 Zea mays HOM05D004964 ORTHO05D005918 5.6e-61 239.2 301 45.5
AagrBONN_evm.TU.Sc2ySwM_340.245 Anthoceros agrestis HOM05D004964 ORTHO05D005918 2.9e-57 226.9 413 36.3
QL03p030145 Quercus lobata HOM05D004964 ORTHO05D005918 5.8e-50 202.6 170 55.9
Os01g0684800 Oryza sativa ssp. japonica HOM05D004964 ORTHO05D005918 7.1e-48 195.7 216 48.6
Pp3c7_7610 Physcomitrium patens HOM05D004964 ORTHO05D005918 3.0e-46 190.3 305 38.0
Ah.10g037790 Amaranthus hybridus HOM05D004964 ORTHO05D005918 6.6e-46 189.1 428 33.4
QL03p030368 Quercus lobata HOM05D004964 ORTHO05D005918 3.6e-44 183.3 201 53.2
Mapoly0082s0051 Marchantia polymorpha HOM05D004964 ORTHO05D005918 8.1e-44 182.2 468 28.6
Pp3c11_21460 Physcomitrium patens HOM05D004964 ORTHO05D005918 5.3e-43 179.5 243 40.3
Aa31LG1G4790 Aethionema arabicum HOM05D004964 ORTHO05D005918 1.5e-42 177.9 136 64.0
QL03p030280 Quercus lobata HOM05D004964 ORTHO05D005918 9.3e-40 168.7 180 55.0
ClCG11G010620 Citrullus lanatus HOM05D004964 ORTHO05D005918 3.6e-36 156.8 177 42.9
BolC9t55572H Brassica oleracea HOM05D004964 ORTHO05D005918 3.4e-34 150.2 103 74.8
MD12G1248600 Malus domestica HOM05D004964 ORTHO05D005918 6.7e-30 136.0 146 52.7
QL03p030283 Quercus lobata HOM05D004964 ORTHO05D005918 5.6e-29 132.9 156 45.5
CBR_g718 Chara braunii HOM05D004964 ORTHO05D005918 7.4e-29 132.5 158 41.1
SMO146G0189 Selaginella moellendorffii HOM05D004964 ORTHO05D005918 1.3e-28 131.7 391 29.4
CDE04G2937 Ceratophyllum demersum HOM05D004964 ORTHO05D005918 1.6e-28 131.3 183 44.8
TPR.G15846 Trifolium pratense HOM05D004964 ORTHO05D005918 3.7e-28 130.2 205 39.0
Haze_04422 Corylus avellana HOM05D004964 ORTHO05D005918 1.4e-27 128.3 164 47.6
SHI23132 Sapria himalayana HOM05D000024 ORTHO05D000007 6.5e-25 119.4 121 53.7
Hund12147 Selenicereus undatus HOM05D004964 ORTHO05D005918 6.5e-25 119.4 213 37.6
SGA_v2.0_scaffold26G11248 Striga asiatica HOM05D004964 ORTHO05D005918 1.6e-23 114.8 210 35.7
Haze_04423 Corylus avellana HOM05D004964 ORTHO05D005918 3.1e-19 100.5 156 39.7
QL03p030376 Quercus lobata HOM05D004964 ORTHO05D005918 1.0e-17 95.5 158 35.4
TPR.G19618 Trifolium pratense HOM05D004964 ORTHO05D005918 1.9e-16 91.3 126 40.5
Lsat_1_v5_gn_6_73440 Lactuca sativa HOM05D001771 ORTHO05D001876 3.2e-16 90.5 115 46.1
CDE04G0768 Ceratophyllum demersum HOM05D004964 ORTHO05D005918 3.1e-11 73.9 157 32.5
SEGI_14565 Sequoiadendron giganteum HOM05D004964 ORTHO05D005918 6.9e-11 72.8 162 30.9
RcHm_v2.0_Chr2g0095691 Rosa chinensis HOM05D004964 ORTHO05D005918 3.2e-08 63.9 69 52.2
arahy.Tifrunner.gnm1.ann1.A28SEL Arachis hypogaea HOM05D000231 ORTHO05D005918 9.4e-08 62.4 67 49.3
Psat7g249360 Pisum sativum HOM05D001947 ORTHO05D021361 6.1e-07 59.7 57 56.1
SEGI_33500 Sequoiadendron giganteum HOM05D004964 ORTHO05D005918 1.0e-06 58.9 100 36.0
HPP92_013453 Vanilla planifolia HOM05D003682 ORTHO05D004224 2.3e-06 57.8 203 24.1


User provided reference genes

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