Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g31615 Brassica carinata HOM05D005284 ORTHO05D006609 7.5e-183 643.7 311 100.0
BraA06t27590Z Brassica rapa HOM05D005284 ORTHO05D006609 1.3e-158 563.1 303 91.1
A06p47190 Brassica napus HOM05D005284 ORTHO05D006609 6.4e-158 560.8 303 90.8
BcaC06g34553 Brassica carinata HOM05D005284 ORTHO05D006609 2.5e-154 548.9 275 96.0
C07p27240 Brassica napus HOM05D005284 ORTHO05D006609 2.5e-154 548.9 275 96.0
BolC7t43252H Brassica oleracea HOM05D005284 ORTHO05D006609 2.5e-154 548.9 275 96.0
Sp2g09280 Schrenkiella parvula HOM05D005284 ORTHO05D006609 8.1e-153 543.9 275 94.5
Thhalv10000956m.g Eutrema salsugineum HOM05D005284 ORTHO05D006609 8.9e-152 540.4 277 93.1
BcaC04g21829 Brassica carinata HOM05D005284 ORTHO05D006609 9.9e-151 537.0 275 93.1
BcaB07g30944 Brassica carinata HOM05D005284 ORTHO05D006609 2.2e-150 535.8 275 92.4
C09p26950 Brassica napus HOM05D005284 ORTHO05D006609 2.4e-149 532.3 276 92.8
BolC9t55580H Brassica oleracea HOM05D005284 ORTHO05D006609 2.4e-149 532.3 276 92.8
A09p21140 Brassica napus HOM05D005284 ORTHO05D006609 5.4e-149 531.2 276 92.8
BraA09t37720Z Brassica rapa HOM05D005284 ORTHO05D006609 5.4e-149 531.2 276 92.8
Carub.0008s0404 Capsella rubella HOM05D005284 ORTHO05D006609 1.6e-148 529.6 275 90.5
AL8G15400 Arabidopsis lyrata HOM05D005284 ORTHO05D006609 1.0e-147 526.9 275 91.3
CARHR178630 Cardamine hirsuta HOM05D005284 ORTHO05D006609 3.9e-147 525.0 275 90.9
Aa31LG9G8740 Aethionema arabicum HOM05D005284 ORTHO05D006609 9.0e-144 513.8 275 89.5
THA.LOC104812070 Tarenaya hassleriana HOM05D005284 ORTHO05D006609 1.8e-136 489.6 275 84.7
Cpa.g.sc489.2 Carica papaya HOM05D005284 ORTHO05D006609 7.9e-124 447.6 278 75.9
Gohir.D10G005900 Gossypium hirsutum HOM05D005284 ORTHO05D006609 3.0e-123 445.7 308 69.5
Gorai.011G006700 Gossypium raimondii HOM05D005284 ORTHO05D006609 6.7e-123 444.5 308 69.2
Gohir.A10G005900 Gossypium hirsutum HOM05D005284 ORTHO05D006609 1.3e-121 440.3 308 68.8
Duzib235G1425 Durio zibethinus HOM05D005284 ORTHO05D006609 1.6e-121 439.9 281 74.4
Thecc.06G009000 Theobroma cacao HOM05D005284 ORTHO05D006609 7.6e-119 431.0 310 70.3
Atru.chr10.695 Acer truncatum HOM05D005284 ORTHO05D006609 1.3e-118 430.3 282 73.4
CiPaw.09G147600 Carya illinoinensis HOM05D005284 ORTHO05D006609 6.5e-118 427.9 278 71.9
Ciclev10016195m.g Citrus clementina HOM05D005284 ORTHO05D006609 3.2e-117 425.6 279 72.0
Potri.011G157500 Populus trichocarpa HOM05D005284 ORTHO05D006609 9.3e-117 424.1 276 74.3
TWI38G1381 Tripterygium wilfordii HOM05D005284 ORTHO05D006609 1.8e-115 419.9 278 72.7
Dinv04290 Davidia involucrata HOM05D005284 ORTHO05D006609 3.3e-114 415.6 278 71.6
TAR626G0222 Trochodendron aralioides HOM05D005284 ORTHO05D006609 4.3e-114 415.2 276 70.3
QL05p064527 Quercus lobata HOM05D005284 ORTHO05D006609 9.7e-114 414.1 277 69.7
Cfa000771 Carpinus fangiana HOM05D005284 ORTHO05D006609 1.6e-113 413.3 312 65.7
CANSAT78G1346 Cannabis sativa HOM05D005284 ORTHO05D006609 2.2e-113 412.9 280 71.4
COL.COLO4_26880 Corchorus olitorius HOM05D005284 ORTHO05D006609 4.1e-112 408.7 342 62.3
Lsat_1_v5_gn_5_75320 Lactuca sativa HOM05D005284 ORTHO05D006609 4.1e-112 408.7 276 71.0
Prupe.4G100600 Prunus persica HOM05D005284 ORTHO05D006609 5.3e-112 408.3 277 70.0
Eucgr.D01014 Eucalyptus grandis HOM05D005284 ORTHO05D006609 9.0e-112 407.5 275 69.8
FvH4_3g11170 Fragaria vesca HOM05D005284 ORTHO05D006609 1.5e-111 406.8 278 71.2
MD10G1243300 Malus domestica HOM05D005284 ORTHO05D006609 3.4e-111 405.6 277 69.0
vmacro03466 Vaccinium macrocarpon HOM05D005284 ORTHO05D006609 3.4e-111 405.6 276 68.8
DCAR_000834 Daucus carota HOM05D005284 ORTHO05D006609 7.7e-111 404.4 277 71.1
Ah.01g003600 Amaranthus hybridus HOM05D005284 ORTHO05D006609 1.3e-110 403.7 280 67.9
Migut.M01924 Erythranthe guttata HOM05D005284 ORTHO05D006609 5.0e-110 401.7 292 65.4
RcHm_v2.0_Chr5g0018081 Rosa chinensis HOM05D005284 ORTHO05D006609 1.1e-109 400.6 278 69.4
MSTRG.7559 Avicennia marina HOM05D005284 ORTHO05D006609 3.2e-109 399.1 283 65.4
EL10Ac9g22329 Beta vulgaris HOM05D005284 ORTHO05D006609 3.2e-109 399.1 278 69.4
Lalb_Chr12g0208701 Lupinus albus HOM05D005284 ORTHO05D006609 4.2e-109 398.7 278 68.3
PSO541G1959 Papaver somniferum HOM05D005284 ORTHO05D006609 4.2e-109 398.7 281 68.3
PSO675G4367 Papaver somniferum HOM05D005284 ORTHO05D006609 4.2e-109 398.7 281 68.3
Actinidia29265 Actinidia chinensis HOM05D005284 ORTHO05D006609 1.6e-108 396.7 278 67.6
Rhsim13G0125000 Rhododendron simsii HOM05D005284 ORTHO05D006609 1.6e-108 396.7 276 68.1
Lj4g0006881 Lotus japonicus HOM05D005284 ORTHO05D006609 2.7e-108 396.0 273 68.9
MD05G1265300 Malus domestica HOM05D005284 ORTHO05D006609 4.6e-108 395.2 278 67.6
Cc08_g07170 Coffea canephora HOM05D005284 ORTHO05D006609 3.0e-107 392.5 277 66.4
CDE02G0074 Ceratophyllum demersum HOM05D005284 ORTHO05D006609 6.7e-107 391.3 268 67.2
Sopen02g006280 Solanum pennellii HOM05D005284 ORTHO05D006609 6.7e-107 391.3 276 67.0
HanXRQChr12g0359761 Helianthus annuus HOM05D005284 ORTHO05D006609 2.5e-106 389.4 278 65.8
Medtr4g094452 Medicago truncatula HOM05D005284 ORTHO05D006609 2.5e-106 389.4 274 67.2
Sed0002797 Sechium edule HOM05D005284 ORTHO05D006609 5.7e-106 388.3 277 66.1
Nn7g37791 Nelumbo nucifera HOM05D005284 ORTHO05D006609 2.8e-105 386.0 276 69.6
Glyma.05G124100 Glycine max HOM05D005284 ORTHO05D006609 3.7e-105 385.6 276 67.0
Phvul.002G201500 Phaseolus vulgaris HOM05D005284 ORTHO05D006609 1.1e-104 384.0 273 66.7
MELO3C007049.2 Cucumis melo HOM05D005284 ORTHO05D006609 1.8e-104 383.3 276 65.2
Glyma.08G079300 Glycine max HOM05D005284 ORTHO05D006609 1.8e-104 383.3 275 66.2
CAN.G39.30 Capsicum annuum HOM05D005284 ORTHO05D006609 3.1e-104 382.5 276 64.9
CsaV3_6G052590 Cucumis sativus L. HOM05D005284 ORTHO05D006609 3.1e-104 382.5 276 64.9
CDE05G2614 Ceratophyllum demersum HOM05D005284 ORTHO05D006609 5.3e-104 381.7 286 64.0
AT5G44450 Arabidopsis thaliana HOM05D005284 ORTHO05D006609 1.5e-103 380.2 202 91.1
Psat7g094280 Pisum sativum HOM05D005284 ORTHO05D006609 2.0e-103 379.8 274 65.3
Aqoxy1G01504 Aquilegia oxysepala HOM05D005284 ORTHO05D006609 2.6e-103 379.4 280 63.6
Aqoxy1G01508 Aquilegia oxysepala HOM05D005284 ORTHO05D006609 2.6e-103 379.4 280 63.6
VMungo0251G0080 Vigna mungo HOM05D005284 ORTHO05D006609 1.3e-102 377.1 274 66.4
arahy.Tifrunner.gnm1.ann1.06Y4PY Arachis hypogaea HOM05D005284 ORTHO05D006609 2.2e-102 376.3 277 66.4
Ca_18306_v3 Cicer arietinum L. HOM05D005284 ORTHO05D006609 1.1e-101 374.0 282 65.2
ATR0763G041 Amborella trichopoda HOM05D005284 ORTHO05D006609 5.5e-101 371.7 276 66.3
Manes.14G126000 Manihot esculenta HOM05D005284 ORTHO05D006609 3.6e-100 369.0 236 74.6
Sabra11G0142700 Salix brachista HOM05D005284 ORTHO05D006609 7.9e-100 367.9 234 75.6
ECA234G4512 Erigeron canadensis HOM05D005284 ORTHO05D006609 1.8e-99 366.7 262 66.8
SalBow8G0467 Salvia bowleyana HOM05D005284 ORTHO05D006609 6.7e-99 364.8 319 56.7
Sc04g0004240 Simmondsia chinensis HOM05D005284 ORTHO05D006609 9.7e-98 360.9 236 73.3
SalBow3G1375 Salvia bowleyana HOM05D005284 ORTHO05D006609 8.2e-97 357.8 308 57.1
Os03g0780900 Oryza sativa ssp. japonica HOM05D005284 ORTHO05D006609 2.4e-96 356.3 305 58.4
Lj2C336G9 Lonicera japonica HOM05D005284 ORTHO05D006609 3.1e-96 355.9 276 64.5
Nitab4.5_0000607g0120 Nicotiana tabacum HOM05D005284 ORTHO05D006609 3.1e-96 355.9 388 49.0
Oeu000506.1 Olea europaea HOM05D005284 ORTHO05D006609 7.0e-96 354.8 350 52.3
HPP92_000943 Vanilla planifolia HOM05D005284 ORTHO05D006609 1.5e-95 353.6 269 63.2
SEGI_24201 Sequoiadendron giganteum HOM05D005284 ORTHO05D006609 7.2e-93 344.7 279 60.2
Nitab4.5_0000100g0010 Nicotiana tabacum HOM05D005284 ORTHO05D006609 9.4e-93 344.4 404 46.8
MBI18_g27137_MAGBIO Magnolia biondii HOM05D005284 ORTHO05D006609 3.6e-92 342.4 318 55.7
FAN25G2940 Fragaria x ananassa HOM05D005284 ORTHO05D006609 1.3e-89 334.0 278 61.5
unitig_748.g7349 Utricularia gibba HOM05D005284 ORTHO05D006609 2.8e-89 332.8 287 58.9
FAN16G1000 Fragaria x ananassa HOM05D005284 ORTHO05D006609 3.7e-89 332.4 277 61.0
FAN21G1306 Fragaria x ananassa HOM05D005284 ORTHO05D006609 4.8e-89 332.0 278 61.2
TPR.G23781 Trifolium pratense HOM05D005284 ORTHO05D006609 4.8e-89 332.0 270 60.7
SMO364G0300 Selaginella moellendorffii HOM05D005284 ORTHO05D006609 2.4e-88 329.7 252 61.9
SGA_v2.0_scaffold1G00293 Striga asiatica HOM05D006189 ORTHO05D007765 3.8e-86 322.4 275 58.2
Peaxi162Scf00155g00513 Petunia axillaris HOM05D005284 ORTHO05D006609 1.9e-85 320.1 276 58.7
Mapoly0083s0001 Marchantia polymorpha HOM05D005284 ORTHO05D006609 1.4e-75 287.3 274 54.0
Zm00001eb059610 Zea mays HOM05D005284 ORTHO05D006609 3.0e-75 286.2 301 50.5
GSVIVG01021778001 Vitis vinifera HOM05D005284 ORTHO05D006609 2.0e-74 283.5 186 71.5
AUR62042202 Chenopodium quinoa HOM05D005284 ORTHO05D006609 5.7e-74 282.0 268 54.5
CBR_g19259 Chara braunii HOM05D005284 ORTHO05D006609 7.0e-72 275.0 264 52.3
PGR083G0243 Punica granatum HOM05D005284 ORTHO05D006609 9.1e-72 274.6 184 69.6
Solyc02g021700.4 Solanum lycopersicum HOM05D005284 ORTHO05D006609 6.6e-70 268.5 183 68.3
AUR62033057 Chenopodium quinoa HOM05D005284 ORTHO05D006609 1.2e-68 264.2 185 66.5
ClCG01G025350 Citrullus lanatus HOM05D005284 ORTHO05D006609 4.7e-68 262.3 322 46.0
MCO11G684 Micromonas commoda HOM05D005284 ORTHO05D006609 7.8e-63 245.0 258 46.9
PRCOL_00002523 Prasinoderma coloniale HOM05D005284 ORTHO05D006609 4.7e-60 235.7 257 45.5
Dinv04294 Davidia involucrata HOM05D005284 ORTHO05D006609 6.8e-59 231.9 142 76.1
AagrBONN_evm.TU.Sc2ySwM_344.3509 Anthoceros agrestis HOM05D005284 ORTHO05D006609 2.7e-55 219.9 197 57.4
Cre06.g274400 Chlamydomonas reinhardtii HOM05D005284 ORTHO05D006609 5.0e-54 215.7 257 42.8
Thecc.06G010000 Theobroma cacao HOM05D005284 ORTHO05D006609 1.1e-53 214.5 187 59.4
CARHR114890 Cardamine hirsuta HOM05D005284 ORTHO05D006609 7.8e-39 165.2 91 83.5
Hma1.2p1_0721F.1_g208670 Hydrangea macrophylla HOM05D005284 ORTHO05D006609 4.3e-37 159.5 110 67.3
Hma1.2p1_0721F.1_g208680 Hydrangea macrophylla HOM05D005284 ORTHO05D006609 4.3e-37 159.5 110 67.3
Aa31LG2G17800 Aethionema arabicum HOM05D005284 ORTHO05D006609 2.6e-34 150.2 115 65.2
Thecc.06G009200 Theobroma cacao HOM05D005284 ORTHO05D006609 2.3e-30 137.1 117 62.4
BcaB07g30524 Brassica carinata HOM05D005284 ORTHO05D006609 1.6e-28 131.0 94 72.3
vmacro21870 Vaccinium macrocarpon HOM05D005284 ORTHO05D006609 2.1e-28 130.6 90 65.6
Thecc.06G009800 Theobroma cacao HOM05D005284 ORTHO05D006609 6.2e-28 129.0 91 70.3
Haze_05942 Corylus avellana HOM05D005284 ORTHO05D006609 8.1e-28 128.6 125 52.8
Cfa017779 Carpinus fangiana HOM05D005284 ORTHO05D006609 1.3e-25 121.3 95 61.1
Thecc.06G009400 Theobroma cacao HOM05D005284 ORTHO05D006609 1.7e-25 120.9 104 62.5
PGSC0003DMG400009806 Solanum tuberosum HOM05D005284 ORTHO05D006609 1.9e-24 117.5 90 60.0
GSVIVG01037925001 Vitis vinifera HOM05D005284 ORTHO05D006609 1.6e-23 114.4 75 72.0
Pp3c22_8670 Physcomitrium patens HOM05D005284 ORTHO05D006609 8.7e-22 108.6 108 50.0
Dinv09223 Davidia involucrata HOM05D005284 ORTHO05D006609 4.3e-21 106.3 92 58.7
Sabra16G0312400 Salix brachista HOM05D005284 ORTHO05D006609 1.4e-19 101.3 62 72.6
Dinv23919 Davidia involucrata HOM05D005284 ORTHO05D006609 5.3e-19 99.4 61 70.5
Lalb_Chr13g0291531 Lupinus albus HOM05D005284 ORTHO05D006609 6.9e-19 99.0 96 52.1
PGSC0003DMG400015105 Solanum tuberosum HOM05D005284 ORTHO05D006609 1.3e-17 94.7 49 79.6
CSS0000752 Camellia sinensis var. sinensis HOM05D005284 ORTHO05D006609 2.9e-17 93.6 51 80.4
Nitab4.5_0000637g0040 Nicotiana tabacum HOM05D005284 ORTHO05D006609 1.8e-11 74.3 57 59.6
Nitab4.5_0001154g0100 Nicotiana tabacum HOM05D005284 ORTHO05D006609 2.6e-10 70.5 46 67.4
CSS0004293 Camellia sinensis var. sinensis HOM05D005284 ORTHO05D006609 3.4e-10 70.1 38 76.3
Glyma.04G136150 Glycine max HOM05D005284 ORTHO05D006609 4.5e-10 69.7 35 77.1
Migut.D00154 Erythranthe guttata HOM05D005284 ORTHO05D006609 1.0e-09 68.6 65 53.8
A07p10120 Brassica napus HOM05D005284 ORTHO05D024396 1.2e-07 61.6 33 72.7
BraA07t28805Z Brassica rapa HOM05D005284 ORTHO05D024396 1.2e-07 61.6 33 72.7
Prupe.4G100800 Prunus persica HOM05D005284 ORTHO05D006609 6.0e-07 59.3 51 47.1
PGR083G1276 Punica granatum HOM05D002609 ORTHO05D002820 6.0e-07 59.3 141 30.5
CsaV3_1G007140 Cucumis sativus L. HOM05D002609 ORTHO05D002820 7.9e-07 58.9 158 28.5
PGR083G0016 Punica granatum HOM05D002609 ORTHO05D002820 1.8e-06 57.8 141 29.8


User provided reference genes

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