Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g31580 Brassica carinata HOM05D004451 ORTHO05D005177 1.7e-143 512.7 271 100.0
BcaB08g34587 Brassica carinata HOM05D004451 ORTHO05D005177 1.9e-94 349.7 193 97.4
A07p05320 Brassica napus HOM05D004451 ORTHO05D005177 3.7e-93 345.5 193 96.4
C07p08470 Brassica napus HOM05D004451 ORTHO05D005177 3.7e-93 345.5 193 96.4
BolC7t41261H Brassica oleracea HOM05D004451 ORTHO05D005177 3.7e-93 345.5 193 96.4
BraA07t28325Z Brassica rapa HOM05D004451 ORTHO05D005177 3.7e-93 345.5 193 96.4
Thhalv10022775m.g Eutrema salsugineum HOM05D004451 ORTHO05D005177 6.3e-93 344.7 193 95.9
Sp3g28570 Schrenkiella parvula HOM05D004451 ORTHO05D005177 8.2e-93 344.4 193 95.9
BcaB03g16278 Brassica carinata HOM05D004451 ORTHO05D005177 1.1e-92 344.0 193 96.4
BcaC06g36051 Brassica carinata HOM05D004451 ORTHO05D005177 1.1e-92 344.0 193 95.9
AL3G47010 Arabidopsis lyrata HOM05D004451 ORTHO05D005177 1.8e-92 343.2 193 94.8
AT2G15290 Arabidopsis thaliana HOM05D004451 ORTHO05D005177 1.8e-92 343.2 193 94.8
BcaB07g31794 Brassica carinata HOM05D004451 ORTHO05D005177 1.8e-92 343.2 193 96.4
Carub.0003s2912 Capsella rubella HOM05D004451 ORTHO05D005177 5.3e-92 341.7 193 94.8
CARHR105660 Cardamine hirsuta HOM05D004451 ORTHO05D005177 6.9e-92 341.3 192 94.3
A09p10690 Brassica napus HOM05D004451 ORTHO05D005177 9.1e-92 340.9 193 94.3
BolC9t54158H Brassica oleracea HOM05D004451 ORTHO05D005177 1.5e-91 340.1 193 94.8
C09p12690 Brassica napus HOM05D004451 ORTHO05D005177 1.7e-90 336.7 193 94.8
Aa31LG8G13140 Aethionema arabicum HOM05D004451 ORTHO05D005177 4.2e-89 332.0 193 91.2
THA.LOC104819557 Tarenaya hassleriana HOM05D004451 ORTHO05D005177 4.5e-83 312.0 194 85.1
THA.LOC104807244 Tarenaya hassleriana HOM05D004451 ORTHO05D005177 2.5e-81 306.2 188 85.1
TAR628G0195 Trochodendron aralioides HOM05D004451 ORTHO05D005177 5.5e-81 305.1 193 82.9
arahy.Tifrunner.gnm1.ann1.BMM90D Arachis hypogaea HOM05D004451 ORTHO05D005177 2.1e-80 303.1 193 82.9
arahy.Tifrunner.gnm1.ann1.S5NBXN Arachis hypogaea HOM05D004451 ORTHO05D005177 2.1e-80 303.1 193 82.9
Atru.chr5.2587 Acer truncatum HOM05D004451 ORTHO05D005177 2.7e-80 302.8 193 83.9
BraA09t36712Z Brassica rapa HOM05D004451 ORTHO05D005177 3.6e-80 302.4 257 69.6
PGR142G3187 Punica granatum HOM05D004451 ORTHO05D005177 1.0e-79 300.8 193 81.9
Gohir.A13G043700 Gossypium hirsutum HOM05D004451 ORTHO05D005177 1.8e-79 300.1 193 81.3
Gohir.D13G042200 Gossypium hirsutum HOM05D004451 ORTHO05D005177 1.8e-79 300.1 193 81.3
Gorai.013G047100 Gossypium raimondii HOM05D004451 ORTHO05D005177 1.8e-79 300.1 193 81.3
Thecc.02G107400 Theobroma cacao HOM05D004451 ORTHO05D005177 1.8e-79 300.1 193 80.8
Cc02_g19230 Coffea canephora HOM05D004451 ORTHO05D005177 3.0e-79 299.3 193 83.9
MSTRG.20184 Avicennia marina HOM05D004451 ORTHO05D005177 3.9e-79 298.9 193 80.8
Hma1.2p1_0796F.1_g219180 Hydrangea macrophylla HOM05D004451 ORTHO05D005177 3.9e-79 298.9 193 82.4
Actinidia17478 Actinidia chinensis HOM05D004451 ORTHO05D005177 6.7e-79 298.1 193 80.3
COL.COLO4_32599 Corchorus olitorius HOM05D004451 ORTHO05D005177 6.7e-79 298.1 193 81.3
Manes.07G069100 Manihot esculenta HOM05D004451 ORTHO05D005177 6.7e-79 298.1 193 80.8
Rhsim05G0088400 Rhododendron simsii HOM05D004451 ORTHO05D005177 8.8e-79 297.7 193 81.3
CANSAT25G0591 Cannabis sativa HOM05D004451 ORTHO05D005177 1.1e-78 297.4 231 71.0
CANSAT25G2876 Cannabis sativa HOM05D004451 ORTHO05D005177 1.1e-78 297.4 254 66.5
SalBow6G6827 Salvia bowleyana HOM05D004451 ORTHO05D005177 1.1e-78 297.4 193 80.3
Lj9C321G12 Lonicera japonica HOM05D004451 ORTHO05D005177 1.5e-78 297.0 193 81.3
VMungo0720G2723 Vigna mungo HOM05D004451 ORTHO05D005177 1.5e-78 297.0 189 83.1
Phvul.007G040300 Phaseolus vulgaris HOM05D004451 ORTHO05D005177 2.0e-78 296.6 193 81.3
Glyma.10G261800 Glycine max HOM05D004451 ORTHO05D005177 2.6e-78 296.2 193 81.3
HanXRQChr16g0514851 Helianthus annuus HOM05D004451 ORTHO05D005177 2.6e-78 296.2 193 81.9
QL11p033916 Quercus lobata HOM05D004451 ORTHO05D005177 2.6e-78 296.2 192 81.2
SGA_v2.0_scaffold32G13039 Striga asiatica HOM05D004451 ORTHO05D005177 2.6e-78 296.2 193 79.8
DCAR_001641 Daucus carota HOM05D004451 ORTHO05D005177 3.3e-78 295.8 193 81.9
Cpa.g.sc106.89 Carica papaya HOM05D004451 ORTHO05D005177 4.4e-78 295.4 192 82.3
ECA234G3549 Erigeron canadensis HOM05D004451 ORTHO05D005177 7.4e-78 294.7 193 81.3
Nn1g04705 Nelumbo nucifera HOM05D004451 ORTHO05D005177 7.4e-78 294.7 193 80.8
CSS0019678 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 9.7e-78 294.3 193 80.8
CiPaw.05G011200 Carya illinoinensis HOM05D004451 ORTHO05D005177 9.7e-78 294.3 242 69.8
Prupe.8G134600 Prunus persica HOM05D004451 ORTHO05D005177 9.7e-78 294.3 193 78.2
Oeu010397.1 Olea europaea HOM05D004451 ORTHO05D005177 1.3e-77 293.9 193 81.3
Actinidia00412 Actinidia chinensis HOM05D004451 ORTHO05D005177 1.7e-77 293.5 193 79.8
Glyma.20G129100 Glycine max HOM05D004451 ORTHO05D005177 1.7e-77 293.5 192 80.7
Oeu018597.1 Olea europaea HOM05D004451 ORTHO05D005177 1.7e-77 293.5 193 81.3
GSVIVG01003161001 Vitis vinifera HOM05D004451 ORTHO05D005177 1.7e-77 293.5 193 79.8
MD05G1088600 Malus domestica HOM05D004451 ORTHO05D005177 2.2e-77 293.1 193 80.3
Lalb_Chr06g0165471 Lupinus albus HOM05D004451 ORTHO05D005177 2.8e-77 292.7 193 80.3
Medtr1g107450 Medicago truncatula HOM05D004451 ORTHO05D005177 3.7e-77 292.4 193 80.8
Duzib132G0413 Durio zibethinus HOM05D004451 ORTHO05D005177 4.8e-77 292.0 193 78.2
Migut.B00385 Erythranthe guttata HOM05D004451 ORTHO05D005177 4.8e-77 292.0 194 79.9
Ciclev10029016m.g Citrus clementina HOM05D004451 ORTHO05D005177 8.2e-77 291.2 193 79.3
Potri.001G300500 Populus trichocarpa HOM05D004451 ORTHO05D005177 8.2e-77 291.2 193 81.3
Duzib248G1610 Durio zibethinus HOM05D004451 ORTHO05D005177 1.1e-76 290.8 193 79.3
Potri.009G096300 Populus trichocarpa HOM05D004451 ORTHO05D005177 1.1e-76 290.8 193 80.3
Gohir.A03G186500 Gossypium hirsutum HOM05D004451 ORTHO05D005177 1.4e-76 290.4 193 79.3
Lj5g0008999 Lotus japonicus HOM05D004451 ORTHO05D005177 1.4e-76 290.4 193 79.3
RcHm_v2.0_Chr6g0255371 Rosa chinensis HOM05D004451 ORTHO05D005177 1.4e-76 290.4 193 78.2
Psat6g219200 Pisum sativum HOM05D004451 ORTHO05D005177 1.8e-76 290.0 193 79.3
ClCG02G006310 Citrullus lanatus HOM05D004451 ORTHO05D005177 2.4e-76 289.7 193 79.8
Haze_10166 Corylus avellana HOM05D004451 ORTHO05D005177 2.4e-76 289.7 193 79.3
Gorai.005G235200 Gossypium raimondii HOM05D004451 ORTHO05D005177 2.4e-76 289.7 193 79.3
Gohir.D02G207300 Gossypium hirsutum HOM05D004451 ORTHO05D005177 3.1e-76 289.3 193 79.3
TWI79G0876 Tripterygium wilfordii HOM05D004451 ORTHO05D005177 3.1e-76 289.3 193 78.2
vmacro19448 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 3.1e-76 289.3 193 79.8
Manes.10G076300 Manihot esculenta HOM05D004451 ORTHO05D005177 4.1e-76 288.9 246 67.9
Lalb_Chr02g0145321 Lupinus albus HOM05D004451 ORTHO05D005177 7.0e-76 288.1 193 80.8
MELO3C018494.2 Cucumis melo HOM05D004451 ORTHO05D005177 9.1e-76 287.7 193 79.3
CsaV3_7G008120 Cucumis sativus L. HOM05D004451 ORTHO05D005177 9.1e-76 287.7 193 79.3
CDE04G0259 Ceratophyllum demersum HOM05D004451 ORTHO05D005177 1.2e-75 287.3 193 78.8
TAR381G0562 Trochodendron aralioides HOM05D004451 ORTHO05D005177 1.2e-75 287.3 273 62.3
Cfa004574 Carpinus fangiana HOM05D004451 ORTHO05D005177 1.6e-75 287.0 193 78.2
MD10G1096700 Malus domestica HOM05D004451 ORTHO05D005177 1.6e-75 287.0 193 77.7
Aqoxy5G01146 Aquilegia oxysepala HOM05D004451 ORTHO05D005177 2.0e-75 286.6 193 78.2
CSS0017890 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 2.0e-75 286.6 193 80.8
CSS0044080 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 2.0e-75 286.6 193 80.8
CiPaw.06G169600 Carya illinoinensis HOM05D004451 ORTHO05D005177 2.0e-75 286.6 193 79.3
HanXRQChr10g0292341 Helianthus annuus HOM05D004451 ORTHO05D005177 2.0e-75 286.6 193 78.8
Rhsim11G0160300 Rhododendron simsii HOM05D004451 ORTHO05D005177 2.6e-75 286.2 203 75.9
Sed0001090 Sechium edule HOM05D004451 ORTHO05D005177 4.5e-75 285.4 193 78.8
Nitab4.5_0002815g0090 Nicotiana tabacum HOM05D004451 ORTHO05D005177 5.9e-75 285.0 193 80.3
PSO210G2671 Papaver somniferum HOM05D004451 ORTHO05D005177 5.9e-75 285.0 193 77.2
FAN20G1574 Fragaria x ananassa HOM05D004451 ORTHO05D005177 7.7e-75 284.6 197 77.7
Sed0013348 Sechium edule HOM05D004451 ORTHO05D005177 7.7e-75 284.6 193 77.7
TWI31G0226 Tripterygium wilfordii HOM05D004451 ORTHO05D005177 1.0e-74 284.3 193 78.8
Ca_11078_v3 Cicer arietinum L. HOM05D004451 ORTHO05D005177 1.3e-74 283.9 193 78.8
PSO170G0588 Papaver somniferum HOM05D004451 ORTHO05D005177 1.3e-74 283.9 193 77.2
FvH4_2g05240 Fragaria vesca HOM05D004451 ORTHO05D005177 1.7e-74 283.5 197 77.2
FAN24G2858 Fragaria x ananassa HOM05D004451 ORTHO05D005177 1.7e-74 283.5 197 77.2
FAN27G3473 Fragaria x ananassa HOM05D004451 ORTHO05D005177 1.7e-74 283.5 197 77.2
AUR62039084 Chenopodium quinoa HOM05D004451 ORTHO05D005177 2.2e-74 283.1 185 79.5
Nn5g30419 Nelumbo nucifera HOM05D004451 ORTHO05D005177 8.5e-74 281.2 193 77.7
Actinidia05493 Actinidia chinensis HOM05D004451 ORTHO05D005177 1.9e-73 280.0 190 76.3
Lsat_1_v5_gn_5_114881 Lactuca sativa HOM05D004451 ORTHO05D005177 4.2e-73 278.9 183 80.9
BcaC04g23051 Brassica carinata HOM05D005496 ORTHO05D006677 5.5e-73 278.5 155 95.5
PGSC0003DMG400025865 Solanum tuberosum HOM05D004451 ORTHO05D005177 9.4e-73 277.7 193 77.2
Peaxi162Scf00016g02324 Petunia axillaris HOM05D004451 ORTHO05D005177 1.2e-72 277.3 190 77.4
FAN15G2242 Fragaria x ananassa HOM05D004451 ORTHO05D005177 2.7e-72 276.2 209 73.7
MSTRG.16716 Avicennia marina HOM05D004451 ORTHO05D005177 3.6e-72 275.8 193 76.2
AUR62010302 Chenopodium quinoa HOM05D004451 ORTHO05D005177 3.6e-72 275.8 193 76.2
SGA_v2.0_scaffold225G43078 Striga asiatica HOM05D004451 ORTHO05D005177 4.7e-72 275.4 191 77.5
Solyc01g107640.3 Solanum lycopersicum HOM05D004451 ORTHO05D005177 6.1e-72 275.0 193 76.7
Hund06320 Selenicereus undatus HOM05D004451 ORTHO05D005177 1.0e-71 274.2 193 78.2
Sopen01g049830 Solanum pennellii HOM05D004451 ORTHO05D005177 1.0e-71 274.2 193 76.7
Nitab4.5_0005392g0030 Nicotiana tabacum HOM05D004451 ORTHO05D005177 1.4e-71 273.9 186 79.0
SEGI_03021 Sequoiadendron giganteum HOM05D004451 ORTHO05D005177 2.3e-71 273.1 234 65.0
Ah.01g018220 Amaranthus hybridus HOM05D004451 ORTHO05D005177 8.8e-71 271.2 194 75.3
Hund00148 Selenicereus undatus HOM05D004451 ORTHO05D005177 1.2e-70 270.8 192 75.5
EL10Ac9g22281 Beta vulgaris HOM05D004451 ORTHO05D005177 7.5e-70 268.1 193 73.6
Os02g0187600 Oryza sativa ssp. japonica HOM05D004451 ORTHO05D005177 1.1e-68 264.2 185 74.1
Sabra09G0074000 Salix brachista HOM05D004451 ORTHO05D005177 1.1e-68 264.2 245 62.9
HPP92_004770 Vanilla planifolia HOM05D004451 ORTHO05D005177 4.5e-67 258.8 193 69.9
Zm00001eb206410 Zea mays HOM05D004451 ORTHO05D005177 5.9e-67 258.5 182 74.2
Os06g0638100 Oryza sativa ssp. japonica HOM05D004451 ORTHO05D005177 2.9e-66 256.1 190 71.6
Sabra16G0188700 Salix brachista HOM05D004451 ORTHO05D005177 2.9e-66 256.1 255 59.6
Pp3c27_4260 Physcomitrium patens HOM05D004451 ORTHO05D005177 9.4e-65 251.1 193 69.9
Pp3c1_21740 Physcomitrium patens HOM05D004451 ORTHO05D005177 2.1e-64 250.0 195 68.7
Mapoly0049s0087 Marchantia polymorpha HOM05D004451 ORTHO05D005177 2.7e-64 249.6 192 71.4
unitig_22.g5194 Utricularia gibba HOM05D004451 ORTHO05D005177 1.0e-63 247.7 193 67.9
Eucgr.E02954 Eucalyptus grandis HOM05D004451 ORTHO05D005177 1.8e-63 246.9 155 81.3
Sc17g0003020 Simmondsia chinensis HOM05D004451 ORTHO05D005177 1.2e-62 244.2 172 76.7
Dinv15761 Davidia involucrata HOM05D004451 ORTHO05D005177 2.0e-62 243.4 167 76.0
Pp3c10_9500 Physcomitrium patens HOM05D004451 ORTHO05D005177 3.4e-62 242.7 194 66.5
ECA240G4367 Erigeron canadensis HOM05D004451 ORTHO05D005177 4.4e-62 242.3 181 72.4
AagrBONN_evm.TU.Sc2ySwM_344.1281 Anthoceros agrestis HOM05D004451 ORTHO05D005177 5.7e-62 241.9 194 66.0
Zm00001eb387350 Zea mays HOM05D004451 ORTHO05D005177 2.8e-61 239.6 190 67.4
vmacro19524 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 1.1e-60 237.7 273 54.6
ATR0691G207 Amborella trichopoda HOM05D004451 ORTHO05D005177 3.5e-59 232.6 157 77.1
unitig_8.g3679 Utricularia gibba HOM05D004451 ORTHO05D005177 2.9e-58 229.6 192 66.7
DCAR_021989 Daucus carota HOM05D004451 ORTHO05D005177 6.6e-58 228.4 155 75.5
SMO118G0560 Selaginella moellendorffii HOM05D004451 ORTHO05D005177 2.7e-51 206.5 179 61.5
CBR_g39267 Chara braunii HOM05D004451 ORTHO05D005177 1.2e-48 197.6 197 58.4
vmacro02006 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 1.6e-43 180.6 193 58.0
SHI05289 Sapria himalayana HOM05D004451 ORTHO05D005177 2.7e-43 179.9 180 56.7
CDE06G1648 Ceratophyllum demersum HOM05D004451 ORTHO05D005177 2.9e-37 159.8 109 75.2
TAR381G0937 Trochodendron aralioides HOM05D004451 ORTHO05D005177 6.4e-37 158.7 107 79.4
MCO10G127 Micromonas commoda HOM05D004451 ORTHO05D005177 1.1e-31 141.4 185 43.2
Zm00001eb234680 Zea mays HOM05D004451 ORTHO05D005177 7.5e-30 135.2 187 45.5
CAN.G1231.10 Capsicum annuum HOM05D004451 ORTHO05D005177 5.4e-28 129.0 87 77.0
SEGI_11302 Sequoiadendron giganteum HOM05D004451 ORTHO05D005177 5.4e-28 129.0 128 57.0
Cre10.g454734 Chlamydomonas reinhardtii HOM05D000133 ORTHO05D005177 2.1e-27 127.1 179 43.0
PRCOL_00004645 Prasinoderma coloniale HOM05D004451 ORTHO05D005177 6.6e-26 122.1 182 40.1
CAN.G3385.1 Capsicum annuum HOM05D004451 ORTHO05D005177 1.4e-20 104.4 78 74.4
CBR_g28861 Chara braunii HOM05D004451 ORTHO05D009492 6.6e-18 95.5 87 58.6
HPP92_008279 Vanilla planifolia HOM05D004451 ORTHO05D005177 6.6e-18 95.5 66 78.8
HanXRQChr01g0018911 Helianthus annuus HOM05D004451 ORTHO05D005177 1.1e-15 88.2 63 74.6
HanXRQChr17g0567381 Helianthus annuus HOM05D004451 ORTHO05D005177 3.1e-15 86.7 63 73.0
Cre11.g467759 Chlamydomonas reinhardtii HOM05D027551 ORTHO05D005177 4.4e-14 82.8 168 35.1
HanXRQChr05g0151971 Helianthus annuus HOM05D002664 ORTHO05D002974 1.0e-10 71.6 42 81.0


User provided reference genes

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