Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g31534 Brassica carinata HOM05D006140 ORTHO05D007834 0.0e+00 1290.4 685 100.0
BcaC06g34418 Brassica carinata HOM05D006140 ORTHO05D007834 0.0e+00 1097.8 694 86.6
C07p28720 Brassica napus HOM05D006140 ORTHO05D007834 0.0e+00 1097.8 694 86.6
BolC7t43410H Brassica oleracea HOM05D006140 ORTHO05D007834 0.0e+00 1097.8 694 86.6
A06p46490 Brassica napus HOM05D006140 ORTHO05D007834 0.0e+00 1083.2 706 85.7
BraA06t27522Z Brassica rapa HOM05D006140 ORTHO05D007834 0.0e+00 1078.5 706 85.3
Sp2g10500 Schrenkiella parvula HOM05D006140 ORTHO05D007834 4.7e-294 1014.2 706 80.2
Aa31LG9G7440 Aethionema arabicum HOM05D006140 ORTHO05D007834 1.8e-250 869.4 695 68.9
Thhalv10000816m.g Eutrema salsugineum HOM05D006140 ORTHO05D007834 4.0e-245 851.7 704 70.0
AT5G45610 Arabidopsis thaliana HOM05D006140 ORTHO05D007834 1.0e-232 810.4 704 66.6
AL8G13070 Arabidopsis lyrata HOM05D006140 ORTHO05D007834 3.6e-222 775.4 725 62.5
THA.LOC104798454 Tarenaya hassleriana HOM05D006140 ORTHO05D007834 2.3e-216 756.1 709 61.2
CARHR176410 Cardamine hirsuta HOM05D006140 ORTHO05D007834 1.9e-202 709.9 501 75.6
Carub.0008s0241 Capsella rubella HOM05D006140 ORTHO05D007834 1.8e-200 703.4 704 60.5
Gohir.A12G205000 Gossypium hirsutum HOM05D006140 ORTHO05D007834 2.9e-118 430.3 706 41.8
Duzib205G1045 Durio zibethinus HOM05D006140 ORTHO05D007834 2.1e-116 424.1 707 43.3
Dinv06909 Davidia involucrata HOM05D006140 ORTHO05D007834 1.1e-112 411.8 714 39.5
Gorai.008G222800 Gossypium raimondii HOM05D006140 ORTHO05D007834 8.4e-110 402.1 706 40.7
Gohir.D12G207400 Gossypium hirsutum HOM05D006140 ORTHO05D007834 1.4e-109 401.4 706 40.7
TAR629G0094 Trochodendron aralioides HOM05D006140 ORTHO05D007834 2.4e-109 400.6 721 38.1
Atru.chr6.1557 Acer truncatum HOM05D006140 ORTHO05D007834 3.3e-106 390.2 782 36.4
FAN18G2089 Fragaria x ananassa HOM05D006140 ORTHO05D007834 5.6e-106 389.4 725 38.2
FAN18G2328 Fragaria x ananassa HOM05D006140 ORTHO05D007834 3.6e-105 386.7 717 38.9
FvH4_5g23380 Fragaria vesca HOM05D006140 ORTHO05D007834 6.2e-105 386.0 715 38.6
Prupe.5G025700 Prunus persica HOM05D006140 ORTHO05D007834 1.1e-104 385.2 736 37.6
CiPaw.11G100200 Carya illinoinensis HOM05D006140 ORTHO05D007834 2.4e-104 384.0 716 38.5
TWI60G0968 Tripterygium wilfordii HOM05D006140 ORTHO05D007834 1.2e-103 381.7 734 37.9
Actinidia14773 Actinidia chinensis HOM05D006140 ORTHO05D007834 2.2e-102 377.5 730 37.4
MD06G1024600 Malus domestica HOM05D006140 ORTHO05D007834 8.4e-102 375.6 660 39.4
Manes.17G016001 Manihot esculenta HOM05D006140 ORTHO05D007834 7.8e-100 369.0 710 37.5
FAN08G2467 Fragaria x ananassa HOM05D006140 ORTHO05D007834 1.3e-99 368.2 726 37.5
Nn1g01908 Nelumbo nucifera HOM05D006140 ORTHO05D007834 1.7e-99 367.9 741 37.7
Thecc.03G312700 Theobroma cacao HOM05D006140 ORTHO05D007834 1.3e-97 361.7 694 38.8
Cfa012537 Carpinus fangiana HOM05D006140 ORTHO05D007834 2.1e-97 360.9 706 37.8
Potri.001G134800 Populus trichocarpa HOM05D006140 ORTHO05D007834 4.0e-96 356.7 733 37.0
RcHm_v2.0_Chr7g0212401 Rosa chinensis HOM05D006140 ORTHO05D007834 3.4e-95 353.6 707 36.4
PGR042G2343 Punica granatum HOM05D006140 ORTHO05D007834 9.9e-95 352.1 646 39.6
QL12p000198 Quercus lobata HOM05D006140 ORTHO05D007834 9.9e-95 352.1 776 36.1
Glyma.09G210300 Glycine max HOM05D006140 ORTHO05D007834 2.9e-94 350.5 718 37.6
Sc22g0001920 Simmondsia chinensis HOM05D006140 ORTHO05D007834 2.9e-94 350.5 721 34.1
Lj2g0005195 Lotus japonicus HOM05D006140 ORTHO05D007834 8.4e-94 349.0 701 38.1
Phvul.002G133700 Phaseolus vulgaris HOM05D006140 ORTHO05D007834 8.4e-94 349.0 729 38.1
Sed0012782 Sechium edule HOM05D006140 ORTHO05D007834 1.4e-93 348.2 720 36.0
VMungo1215G1486 Vigna mungo HOM05D006140 ORTHO05D007834 2.4e-93 347.4 652 39.7
Lalb_Chr09g0325351 Lupinus albus HOM05D006140 ORTHO05D007834 3.2e-93 347.1 691 38.5
Glyma.01G010800 Glycine max HOM05D006140 ORTHO05D007834 2.1e-92 344.4 716 37.8
arahy.Tifrunner.gnm1.ann1.B53Y8P Arachis hypogaea HOM05D006140 ORTHO05D007834 2.7e-92 344.0 739 37.3
arahy.Tifrunner.gnm1.ann1.HKBA6R Arachis hypogaea HOM05D006140 ORTHO05D007834 2.7e-92 344.0 739 37.3
Potri.003G098700 Populus trichocarpa HOM05D006140 ORTHO05D007834 3.5e-92 343.6 722 37.3
ClCG09G011510 Citrullus lanatus HOM05D006140 ORTHO05D007834 4.6e-92 343.2 731 35.7
CsaV3_3G048750 Cucumis sativus L. HOM05D006140 ORTHO05D007834 1.0e-91 342.0 728 34.8
CSS0008724 Camellia sinensis var. sinensis HOM05D006140 ORTHO05D007834 4.8e-89 333.2 731 36.0
ECA233G4025 Erigeron canadensis HOM05D006140 ORTHO05D007834 4.8e-89 333.2 724 35.6
Psat2g140200 Pisum sativum HOM05D006140 ORTHO05D007834 6.9e-88 329.3 752 35.8
CANSAT21G0745 Cannabis sativa HOM05D006140 ORTHO05D007834 4.5e-87 326.6 656 38.3
Sopen08g024830 Solanum pennellii HOM05D006140 ORTHO05D007834 7.6e-87 325.9 714 35.7
HanXRQChr15g0469721 Helianthus annuus HOM05D006140 ORTHO05D007834 1.0e-86 325.5 627 39.6
Ca_25157_v3 Cicer arietinum L. HOM05D006140 ORTHO05D007834 4.9e-86 323.2 734 35.8
Migut.A00588 Erythranthe guttata HOM05D006140 ORTHO05D007834 8.4e-86 322.4 703 35.1
FAN04G1734 Fragaria x ananassa HOM05D006140 ORTHO05D007834 3.2e-85 320.5 717 35.8
DCAR_008203 Daucus carota HOM05D006140 ORTHO05D007834 1.3e-83 315.1 718 34.7
Solyc08g076190.3 Solanum lycopersicum HOM05D006140 ORTHO05D007834 1.1e-82 312.0 719 34.6
AUR62027322 Chenopodium quinoa HOM05D006140 ORTHO05D007834 1.6e-81 308.1 721 34.4
Medtr5g027920 Medicago truncatula HOM05D006140 ORTHO05D007834 2.8e-81 307.4 730 34.4
Lsat_1_v5_gn_6_17700 Lactuca sativa HOM05D006140 ORTHO05D007834 1.4e-80 305.1 698 37.2
SGA_v2.0_scaffold89G27431 Striga asiatica HOM05D006140 ORTHO05D007834 1.7e-78 298.1 712 35.0
TPR.G19464 Trifolium pratense HOM05D006140 ORTHO05D007834 1.1e-77 295.4 678 34.8
Sabra01G0104200 Salix brachista HOM05D006140 ORTHO05D007834 2.5e-77 294.3 550 38.4
EL10Ac5g11927 Beta vulgaris HOM05D006140 ORTHO05D007834 3.5e-76 290.4 751 34.1
Hund11103 Selenicereus undatus HOM05D006140 ORTHO05D007834 7.9e-76 289.3 653 34.9
vmacro14212 Vaccinium macrocarpon HOM05D006140 ORTHO05D007834 2.3e-75 287.7 922 30.0
Rhsim07G0134400 Rhododendron simsii HOM05D006140 ORTHO05D007834 1.5e-74 285.0 655 34.2
Peaxi162Scf00879g00021 Petunia axillaris HOM05D006140 ORTHO05D007834 1.3e-73 282.0 708 34.6
PSO782G1224 Papaver somniferum HOM05D006140 ORTHO05D007834 1.6e-73 281.6 670 33.1
PSO063G5188 Papaver somniferum HOM05D006140 ORTHO05D007834 2.8e-73 280.8 670 33.0
AUR62007410 Chenopodium quinoa HOM05D006140 ORTHO05D007834 1.1e-72 278.9 594 34.3
Nitab4.5_0000543g0200 Nicotiana tabacum HOM05D006140 ORTHO05D007834 1.1e-72 278.9 744 34.1
SalBow1G1748 Salvia bowleyana HOM05D006140 ORTHO05D007834 3.1e-72 277.3 709 32.9
Aqoxy3G02157 Aquilegia oxysepala HOM05D006140 ORTHO05D007834 5.0e-70 270.0 502 34.1
MELO3C030376.2 Cucumis melo HOM05D006140 ORTHO05D007834 2.1e-68 264.6 799 31.4
Ciclev10003207m.g Citrus clementina HOM05D006140 ORTHO05D007834 2.7e-68 264.2 319 51.4
GSVIVG01012994001 Vitis vinifera HOM05D006140 ORTHO05D007834 6.7e-67 259.6 333 48.9
Nitab4.5_0003023g0010 Nicotiana tabacum HOM05D006140 ORTHO05D007834 4.3e-66 256.9 723 33.2
ATR0829G104 Amborella trichopoda HOM05D006140 ORTHO05D007834 2.2e-57 228.0 496 33.3
PGSC0003DMG401009319 Solanum tuberosum HOM05D006140 ORTHO05D007834 5.0e-54 216.9 278 44.2
Cc00_g09430 Coffea canephora HOM05D006140 ORTHO05D007834 1.1e-53 215.7 278 44.2
HPP92_020808 Vanilla planifolia HOM05D006140 ORTHO05D007834 3.2e-53 214.2 790 27.5
Ah.12g055990 Amaranthus hybridus HOM05D006140 ORTHO05D007834 1.2e-52 212.2 640 30.5
Lj3g0005794 Lotus japonicus HOM05D006140 ORTHO05D007834 8.5e-46 189.5 226 48.7
Zm00001eb208860 Zea mays HOM05D006140 ORTHO05D007834 2.6e-42 177.9 598 29.8
Eucgr.E01307 Eucalyptus grandis HOM05D006140 ORTHO05D007834 2.5e-37 161.4 416 34.1
Haze_08125 Corylus avellana HOM05D006140 ORTHO05D007834 8.3e-33 146.4 151 55.0
MBI04_g36019_MAGBIO Magnolia biondii HOM05D006140 ORTHO05D007834 2.5e-29 134.8 426 29.3
Lj6g0014120 Lotus japonicus HOM05D006140 ORTHO05D007834 1.2e-28 132.5 151 51.0
Hma1.2p1_1460F.1_g284980 Hydrangea macrophylla HOM05D006140 ORTHO05D007834 4.6e-23 114.0 150 48.0
unitig_32.g10971 Utricularia gibba HOM05D006140 ORTHO05D007834 7.8e-23 113.2 207 37.2
COL.COLO4_16905 Corchorus olitorius HOM05D006140 ORTHO05D007834 1.3e-22 112.5 352 31.0
SEGI_17370 Sequoiadendron giganteum HOM05D006140 ORTHO05D007834 2.5e-21 108.2 700 22.1
SHI20257 Sapria himalayana HOM05D006140 ORTHO05D007834 3.3e-21 107.8 165 44.2
MBI04_g20983_MAGBIO Magnolia biondii HOM05D006140 ORTHO05D007834 8.0e-20 103.2 133 45.9
PGSC0003DMG402009319 Solanum tuberosum HOM05D006140 ORTHO05D007834 8.9e-19 99.8 330 31.5
CDE02G1222 Ceratophyllum demersum HOM05D006140 ORTHO05D007834 1.5e-18 99.0 159 40.3
Cc00_g09420 Coffea canephora HOM05D006140 ORTHO05D007834 1.1e-16 92.8 387 30.2
BolC3t14428H Brassica oleracea HOM05D006140 ORTHO05D041528 9.2e-16 89.7 70 74.3
C03p20480 Brassica napus HOM05D006140 ORTHO05D041528 2.7e-15 88.2 70 72.9
Ciclev10003621m.g Citrus clementina HOM05D006140 ORTHO05D007834 6.6e-14 83.6 289 32.9
Pp3c4_25200 Physcomitrium patens HOM05D006140 ORTHO05D007834 1.9e-13 82.0 419 23.2
Cpa.g.sc16.12 Carica papaya HOM05D006140 ORTHO05D007834 3.3e-13 81.3 122 38.5
Actinidia24581 Actinidia chinensis HOM05D006140 ORTHO05D007834 4.7e-12 77.4 286 28.0
CDE02G0505 Ceratophyllum demersum HOM05D006140 ORTHO05D007834 1.8e-11 75.5 335 27.2
SHI20259 Sapria himalayana HOM05D006140 ORTHO05D007834 6.8e-11 73.6 257 28.8
Mapoly0016s0037 Marchantia polymorpha HOM05D006140 ORTHO05D007834 1.9e-08 65.5 617 21.6
Hma1.2p1_1460F.1_g284990 Hydrangea macrophylla HOM05D006140 ORTHO05D007834 5.4e-08 63.9 174 36.2
Oeu063929.1 Olea europaea HOM05D006140 ORTHO05D007834 1.2e-07 62.8 55 60.0
COL.COLO4_16906 Corchorus olitorius HOM05D006140 ORTHO05D007834 3.5e-07 61.2 110 40.9
Medtr5g019630 Medicago truncatula HOM05D006140 ORTHO05D007834 8.6e-06 56.6 108 41.7
unitig_32.g10972 Utricularia gibba HOM05D006140 ORTHO05D007834 8.6e-06 56.6 149 35.6


User provided reference genes

Program Settings