Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g31468 Brassica carinata HOM05D006624 ORTHO05D008209 3.0e-221 771.5 385 100.0
BcaC06g34373 Brassica carinata HOM05D006624 ORTHO05D008209 1.2e-201 706.4 385 90.6
A06p45890 Brassica napus HOM05D006624 ORTHO05D008209 2.4e-199 698.7 385 90.4
BolC7t43526H Brassica oleracea HOM05D006624 ORTHO05D008209 1.2e-198 696.4 386 90.4
BraA06t27456Z Brassica rapa HOM05D006624 ORTHO05D008209 1.6e-198 696.0 385 89.9
C07p29750 Brassica napus HOM05D006624 ORTHO05D008209 1.9e-196 689.1 386 89.4
AL8G11790 Arabidopsis lyrata HOM05D006624 ORTHO05D008209 3.8e-168 595.1 381 78.2
Aa31LG9G6360 Aethionema arabicum HOM05D006624 ORTHO05D008209 2.6e-161 572.4 385 72.7
AT5G46560 Arabidopsis thaliana HOM05D006624 ORTHO05D008209 2.9e-160 568.9 389 74.8
Thhalv10000965m.g Eutrema salsugineum HOM05D006624 ORTHO05D008209 8.5e-152 540.8 315 84.4
Carub.0008s0136 Capsella rubella HOM05D006624 ORTHO05D008209 9.4e-143 510.8 349 72.5
THA.LOC104827742 Tarenaya hassleriana HOM05D006624 ORTHO05D008209 9.4e-143 510.8 385 65.2
Ciclev10031769m.g Citrus clementina HOM05D006624 ORTHO05D008209 7.0e-114 414.8 332 58.4
CiPaw.11G087800 Carya illinoinensis HOM05D006624 ORTHO05D008209 2.3e-112 409.8 364 55.2
Duzib068G0530 Durio zibethinus HOM05D006624 ORTHO05D008209 6.6e-112 408.3 369 55.3
Gorai.003G180000 Gossypium raimondii HOM05D006624 ORTHO05D008209 5.6e-111 405.2 358 55.6
TWI15G0738 Tripterygium wilfordii HOM05D006624 ORTHO05D008209 5.6e-111 405.2 361 55.1
COL.COLO4_17108 Corchorus olitorius HOM05D000087 ORTHO05D008209 9.5e-111 404.4 352 54.5
Sabra01G0115200 Salix brachista HOM05D006624 ORTHO05D008209 4.0e-109 399.1 361 52.6
CARHR175020 Cardamine hirsuta HOM05D006624 ORTHO05D008209 3.4e-108 396.0 239 78.2
TAR629G2579 Trochodendron aralioides HOM05D006624 ORTHO05D008209 7.5e-108 394.8 375 53.1
Gohir.A03G002600 Gossypium hirsutum HOM05D006624 ORTHO05D008209 2.9e-107 392.9 370 53.5
MD06G1040000 Malus domestica HOM05D006624 ORTHO05D008209 2.9e-107 392.9 369 53.4
Potri.001G146500 Populus trichocarpa HOM05D006624 ORTHO05D008209 3.7e-107 392.5 361 52.4
QL12p007008 Quercus lobata HOM05D006624 ORTHO05D008209 3.7e-107 392.5 356 53.9
Dinv25186 Davidia involucrata HOM05D006624 ORTHO05D008209 1.8e-106 390.2 367 53.1
Manes.17G019300 Manihot esculenta HOM05D006624 ORTHO05D008209 1.6e-105 387.1 364 53.0
Actinidia10881 Actinidia chinensis HOM05D006624 ORTHO05D008209 5.9e-105 385.2 366 51.6
Haze_08295 Corylus avellana HOM05D006624 ORTHO05D008209 5.9e-105 385.2 397 50.9
Lj2g0021367 Lotus japonicus HOM05D006624 ORTHO05D008209 7.8e-105 384.8 342 54.1
GSVIVG01013232001 Vitis vinifera HOM05D006624 ORTHO05D008209 2.3e-104 383.3 361 53.7
Prupe.5G046100 Prunus persica HOM05D006624 ORTHO05D008209 5.0e-104 382.1 361 53.7
Glyma.11G041200 Glycine max HOM05D006624 ORTHO05D008209 4.3e-103 379.0 330 56.4
PGR042G3682 Punica granatum HOM05D006624 ORTHO05D008209 2.3e-101 373.2 365 52.6
Actinidia31470 Actinidia chinensis HOM05D006624 ORTHO05D008209 2.0e-100 370.2 369 50.1
Psat2g174640 Pisum sativum HOM05D006624 ORTHO05D008209 2.0e-100 370.2 329 54.7
TPR.G21431 Trifolium pratense HOM05D006624 ORTHO05D008209 2.0e-100 370.2 336 54.8
VMungo1215G2954 Vigna mungo HOM05D006624 ORTHO05D008209 2.0e-100 370.2 349 54.4
Phvul.002G004700 Phaseolus vulgaris HOM05D006624 ORTHO05D008209 2.6e-100 369.8 344 54.1
Thecc.03G233800 Theobroma cacao HOM05D006624 ORTHO05D008209 3.4e-100 369.4 381 50.9
Rhsim07G0122500 Rhododendron simsii HOM05D006624 ORTHO05D008209 9.8e-100 367.9 378 48.9
CSS0000809 Camellia sinensis var. sinensis HOM05D006624 ORTHO05D008209 1.3e-99 367.5 370 50.3
CSS0049781 Camellia sinensis var. sinensis HOM05D006624 ORTHO05D008209 1.7e-99 367.1 370 50.3
CsaV3_3G049520 Cucumis sativus L. HOM05D006624 ORTHO05D008209 2.9e-99 366.3 389 49.6
Sed0020690 Sechium edule HOM05D006624 ORTHO05D008209 2.4e-98 363.2 356 50.6
Glyma.01G200900 Glycine max HOM05D006624 ORTHO05D008209 7.0e-98 361.7 333 53.2
RcHm_v2.0_Chr7g0208351 Rosa chinensis HOM05D006624 ORTHO05D008209 1.2e-97 360.9 362 49.4
Medtr5g014010 Medicago truncatula HOM05D006624 ORTHO05D008209 1.6e-97 360.5 337 53.1
arahy.Tifrunner.gnm1.ann1.A7V6P3 Arachis hypogaea HOM05D006624 ORTHO05D008209 3.9e-96 355.9 373 50.7
Nitab4.5_0004327g0020 Nicotiana tabacum HOM05D006624 ORTHO05D008209 3.9e-96 355.9 349 50.4
ClCG09G012360 Citrullus lanatus HOM05D006624 ORTHO05D008209 5.0e-96 355.5 368 50.8
Nitab4.5_0002055g0180 Nicotiana tabacum HOM05D006624 ORTHO05D008209 6.6e-96 355.1 395 45.6
Sopen08g025830 Solanum pennellii HOM05D006624 ORTHO05D008209 6.6e-96 355.1 382 48.2
Atru.chr6.1770 Acer truncatum HOM05D006624 ORTHO05D008209 1.5e-95 354.0 356 50.6
QL12p007057 Quercus lobata HOM05D006624 ORTHO05D008209 1.9e-95 353.6 363 49.9
arahy.Tifrunner.gnm1.ann1.76B0S0 Arachis hypogaea HOM05D006624 ORTHO05D008209 2.5e-95 353.2 380 49.7
Eucgr.E00310 Eucalyptus grandis HOM05D006624 ORTHO05D008209 4.3e-95 352.4 354 50.0
PGSC0003DMG400024215 Solanum tuberosum HOM05D006624 ORTHO05D008209 2.8e-94 349.7 369 48.0
Solyc08g077250.4 Solanum lycopersicum HOM05D006624 ORTHO05D008209 3.6e-94 349.4 391 46.0
vmacro14109 Vaccinium macrocarpon HOM05D006624 ORTHO05D008209 8.1e-94 348.2 434 43.1
CAN.G799.14 Capsicum annuum HOM05D006624 ORTHO05D008209 1.8e-93 347.1 371 47.4
HanXRQChr08g0227961 Helianthus annuus HOM05D006624 ORTHO05D008209 2.3e-93 346.7 354 48.3
Lalb_Chr16g0379211 Lupinus albus HOM05D006624 ORTHO05D008209 1.5e-92 344.0 335 51.0
FAN04G0639 Fragaria x ananassa HOM05D006624 ORTHO05D008209 3.4e-92 342.8 363 47.7
Cc08_g02070 Coffea canephora HOM05D006624 ORTHO05D008209 1.7e-91 340.5 362 50.6
Gohir.D03G169701 Gossypium hirsutum HOM05D006624 ORTHO05D008209 7.1e-90 335.1 274 56.2
FvH4_5g21210 Fragaria vesca HOM05D006624 ORTHO05D008209 1.2e-89 334.3 363 47.1
Aqoxy7G00644 Aquilegia oxysepala HOM05D006624 ORTHO05D008209 1.6e-89 334.0 348 48.6
Sc01g0007740 Simmondsia chinensis HOM05D006624 ORTHO05D008209 3.5e-89 332.8 360 47.5
Hund14427 Selenicereus undatus HOM05D006624 ORTHO05D008209 3.0e-88 329.7 371 46.6
ECA233G2124 Erigeron canadensis HOM05D006624 ORTHO05D008209 3.9e-88 329.3 374 45.5
MELO3C003374.2 Cucumis melo HOM05D006624 ORTHO05D008209 1.1e-87 327.8 385 47.3
Migut.N01377 Erythranthe guttata HOM05D006624 ORTHO05D008209 1.5e-87 327.4 373 45.3
FAN08G0242 Fragaria x ananassa HOM05D006624 ORTHO05D008209 1.5e-87 327.4 349 46.4
MSTRG.12153 Avicennia marina HOM05D006624 ORTHO05D008209 2.1e-86 323.6 372 47.3
PSO339G2002 Papaver somniferum HOM05D006624 ORTHO05D008209 2.8e-86 323.2 377 46.7
DCAR_031785 Daucus carota HOM05D006624 ORTHO05D008209 5.2e-85 318.9 355 46.8
Ah.07g200030 Amaranthus hybridus HOM05D006624 ORTHO05D008209 1.5e-84 317.4 362 48.6
EL10Ac5g12192 Beta vulgaris HOM05D006624 ORTHO05D008209 5.8e-84 315.5 353 47.0
PSO565G0001 Papaver somniferum HOM05D006624 ORTHO05D008209 1.3e-83 314.3 386 46.4
AUR62007233 Chenopodium quinoa HOM05D006624 ORTHO05D008209 6.4e-83 312.0 367 46.9
AUR62018767 Chenopodium quinoa HOM05D006624 ORTHO05D008209 2.3e-80 303.5 354 46.3
Lsat_1_v5_gn_6_68241 Lactuca sativa HOM05D006624 ORTHO05D008209 1.6e-78 297.4 360 45.0
SGA_v2.0_scaffold36G14316 Striga asiatica HOM05D006624 ORTHO05D008209 1.6e-78 297.4 370 43.0
FAN18G2886 Fragaria x ananassa HOM05D006624 ORTHO05D008209 1.3e-75 287.7 393 42.0
CDE04G3153 Ceratophyllum demersum HOM05D006624 ORTHO05D008209 1.7e-72 277.3 335 45.1
SpUn0632_0010 Schrenkiella parvula HOM05D006624 ORTHO05D008209 2.3e-72 276.9 225 65.3
ATR1101G009 Amborella trichopoda HOM05D006624 ORTHO05D008209 1.5e-71 274.2 329 44.4
Cpa.g.sc6.412 Carica papaya HOM05D006624 ORTHO05D008209 2.8e-70 270.0 229 55.5
QL12p007029 Quercus lobata HOM05D006624 ORTHO05D008209 5.4e-66 255.8 255 49.4
Zm00001eb000170 Zea mays HOM05D006624 ORTHO05D008209 5.4e-66 255.8 341 39.3
SalBow6G4456 Salvia bowleyana HOM05D006624 ORTHO05D008209 4.6e-65 252.7 470 32.6
MBI04_g31972_MAGBIO Magnolia biondii HOM05D006624 ORTHO05D008209 1.3e-62 244.6 403 38.7
Ca_24634_v3 Cicer arietinum L. HOM05D006624 ORTHO05D008209 4.5e-60 236.1 169 64.5
Gorai.001G276000 Gossypium raimondii HOM05D006624 ORTHO05D008209 1.9e-58 230.7 276 45.7
Lj2A246G27 Lonicera japonica HOM05D006624 ORTHO05D008209 3.9e-56 223.0 288 42.0
Pp3c26_11390 Physcomitrium patens HOM05D006624 ORTHO05D008209 9.0e-53 211.8 359 36.8
Peaxi162Scf00084g00925 Petunia axillaris HOM05D006624 ORTHO05D008209 4.9e-51 206.1 195 51.3
Mapoly0037s0054 Marchantia polymorpha HOM05D006624 ORTHO05D008209 6.5e-51 205.7 356 34.8
Gorai.004G193000 Gossypium raimondii HOM05D006624 ORTHO05D008209 9.3e-50 201.8 240 45.8
Hma1.2p1_3049F.1_g332130 Hydrangea macrophylla HOM05D006624 ORTHO05D008209 1.2e-49 201.4 297 39.7
FAN13G3188 Fragaria x ananassa HOM05D006624 ORTHO05D008209 2.7e-49 200.3 180 51.1
SEGI_35168 Sequoiadendron giganteum HOM05D006624 ORTHO05D008209 2.5e-47 193.7 303 35.0
Hma1.2p1_0414F.1_g147760 Hydrangea macrophylla HOM05D006624 ORTHO05D008209 6.3e-38 162.5 158 50.6
Gorai.013G102100 Gossypium raimondii HOM05D006624 ORTHO05D008209 1.3e-35 154.8 325 34.2
Hma1.2p1_3049F.1_g332131 Hydrangea macrophylla HOM05D006624 ORTHO05D008209 2.7e-33 147.1 112 63.4
CBR_g18557 Chara braunii HOM05D006624 ORTHO05D008209 6.1e-33 146.0 246 31.3
AagrBONN_evm.TU.Sc2ySwM_362.2673 Anthoceros agrestis HOM05D006624 ORTHO05D008209 2.5e-26 124.0 191 34.0
Duzib084G0908 Durio zibethinus HOM05D006624 ORTHO05D008209 1.2e-25 121.7 129 44.2
Gorai.004G213700 Gossypium raimondii HOM05D006624 ORTHO05D008209 1.2e-25 121.7 243 34.2
arahy.Tifrunner.gnm1.ann1.PE2WYP Arachis hypogaea HOM05D006624 ORTHO05D008209 8.0e-25 119.0 181 40.9
Peaxi162Scf00084g00918 Petunia axillaris HOM05D006624 ORTHO05D008209 2.6e-23 114.0 132 45.5
Gohir.D11G288800 Gossypium hirsutum HOM05D000724 ORTHO05D011687 2.0e-15 87.8 108 37.0
Gorai.001G079600 Gossypium raimondii HOM05D006624 ORTHO05D008209 1.7e-14 84.7 86 43.0
Os03g0100050 Oryza sativa ssp. japonica HOM05D006624 ORTHO05D008209 4.1e-13 80.1 100 40.0
Gorai.007G312600 Gossypium raimondii HOM05D000724 ORTHO05D011687 1.0e-11 75.5 85 52.9
Gohir.D07G137350 Gossypium hirsutum HOM05D006624 ORTHO05D008209 2.2e-11 74.3 85 52.9
Gohir.D07G137300 Gossypium hirsutum HOM05D006624 ORTHO05D008209 2.9e-11 73.9 65 47.7
Gohir.D08G202450 Gossypium hirsutum HOM05D006624 ORTHO05D008209 3.8e-11 73.6 68 47.1
Gohir.D11G288766 Gossypium hirsutum HOM05D006624 ORTHO05D008209 3.8e-11 73.6 85 51.8
Gohir.D08G202425 Gossypium hirsutum HOM05D006624 ORTHO05D008209 5.0e-11 73.2 85 51.8
Gohir.D07G075451 Gossypium hirsutum HOM05D006624 ORTHO05D008209 8.5e-11 72.4 85 51.8
CBR_g30426 Chara braunii HOM05D006624 ORTHO05D008209 1.7e-06 58.2 49 49.0


User provided reference genes

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