Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g31462 Brassica carinata HOM05D004587 ORTHO05D005512 3.2e-77 291.6 138 100.0
Thhalv10001062m.g Eutrema salsugineum HOM05D004587 ORTHO05D005512 2.9e-62 241.9 147 80.3
BolC7t43533H Brassica oleracea HOM05D004587 ORTHO05D005512 6.5e-62 240.7 144 81.2
Carub.0008s0129 Capsella rubella HOM05D004587 ORTHO05D005512 1.1e-61 240.0 148 79.7
BcaC06g34365 Brassica carinata HOM05D004587 ORTHO05D005512 1.9e-61 239.2 144 80.6
C07p29850 Brassica napus HOM05D004587 ORTHO05D005512 1.9e-61 239.2 144 80.6
Sp2g11450 Schrenkiella parvula HOM05D004587 ORTHO05D005512 5.5e-61 237.7 147 79.6
AL8G11720 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 1.2e-60 236.5 150 77.3
A06p45800 Brassica napus HOM05D004587 ORTHO05D005512 4.7e-60 234.6 141 81.6
BraA02t08033Z Brassica rapa HOM05D004587 ORTHO05D005512 1.8e-59 232.6 148 77.7
A02p30170 Brassica napus HOM05D004587 ORTHO05D005512 2.3e-59 232.3 148 77.7
C02p47640 Brassica napus HOM05D004587 ORTHO05D005512 5.1e-59 231.1 147 77.6
BolC2t10800H Brassica oleracea HOM05D004587 ORTHO05D005512 5.1e-59 231.1 147 77.6
BraA06t27449Z Brassica rapa HOM05D004587 ORTHO05D005512 6.7e-59 230.7 138 80.4
CARHR174890 Cardamine hirsuta HOM05D004587 ORTHO05D005512 4.4e-58 228.0 149 75.8
AT5G46620 Arabidopsis thaliana HOM05D004587 ORTHO05D005512 3.9e-51 204.9 151 70.9
BcaC03g16867 Brassica carinata HOM05D004587 ORTHO05D005512 1.4e-48 196.4 112 83.9
Aa31LG9G6270 Aethionema arabicum HOM05D004587 ORTHO05D005512 8.0e-44 180.6 146 67.1
C01p11800 Brassica napus HOM05D004587 ORTHO05D005512 4.0e-43 178.3 147 63.3
BcaNung00040 Brassica carinata HOM05D004587 ORTHO05D005512 2.0e-42 176.0 153 61.4
BolC1t01142H Brassica oleracea HOM05D004587 ORTHO05D005512 2.6e-42 175.6 147 62.6
Thhalv10027517m.g Eutrema salsugineum HOM05D004587 ORTHO05D005512 2.6e-42 175.6 147 63.9
BcaC09g51581 Brassica carinata HOM05D004587 ORTHO05D005512 3.4e-42 175.3 147 62.6
A01p10000 Brassica napus HOM05D004587 ORTHO05D005512 9.8e-42 173.7 147 61.9
BraA01t00944Z Brassica rapa HOM05D004587 ORTHO05D005512 9.8e-42 173.7 147 61.9
Sp7g16150 Schrenkiella parvula HOM05D004587 ORTHO05D005512 2.8e-41 172.2 148 64.2
THA.LOC104812836 Tarenaya hassleriana HOM05D004587 ORTHO05D005512 2.8e-41 172.2 155 60.6
CARHR224700 Cardamine hirsuta HOM05D004587 ORTHO05D005512 1.1e-40 170.2 149 61.1
AL7G36550 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 1.2e-39 166.8 147 59.9
AT4G17960 Arabidopsis thaliana HOM05D004587 ORTHO05D005512 5.0e-38 161.4 147 58.5
Carub.0007s2338 Capsella rubella HOM05D004587 ORTHO05D005512 5.0e-38 161.4 147 56.5
Aa31LG6G710 Aethionema arabicum HOM05D004587 ORTHO05D005512 3.0e-35 152.1 133 57.9
Prupe.5G039100 Prunus persica HOM05D004587 ORTHO05D005512 4.5e-31 138.3 146 52.7
CiPaw.12G062400 Carya illinoinensis HOM05D004587 ORTHO05D005512 1.7e-30 136.3 153 47.1
CiPaw.11G092100 Carya illinoinensis HOM05D004587 ORTHO05D005512 3.8e-30 135.2 146 49.3
Duzib068G1306 Durio zibethinus HOM05D004587 ORTHO05D005512 9.5e-29 130.6 151 47.0
Atru.chr6.1737 Acer truncatum HOM05D004587 ORTHO05D005512 1.4e-27 126.7 147 49.7
FAN18G4447 Fragaria x ananassa HOM05D004587 ORTHO05D005512 4.0e-27 125.2 146 48.6
PGR042G1036 Punica granatum HOM05D004587 ORTHO05D005512 4.0e-27 125.2 146 45.2
RcHm_v2.0_Chr7g0209351 Rosa chinensis HOM05D004587 ORTHO05D005512 1.5e-26 123.2 141 48.2
FAN08G2253 Fragaria x ananassa HOM05D004587 ORTHO05D005512 2.0e-26 122.9 142 45.8
Thecc.03G229700 Theobroma cacao HOM05D004587 ORTHO05D005512 2.0e-26 122.9 151 45.0
FvH4_5g21840 Fragaria vesca HOM05D004587 ORTHO05D005512 2.6e-26 122.5 142 48.6
Gohir.D08G177900 Gossypium hirsutum HOM05D004587 ORTHO05D005512 3.4e-26 122.1 149 45.6
Gorai.004G186100 Gossypium raimondii HOM05D004587 ORTHO05D005512 4.4e-26 121.7 149 45.6
Gohir.A08G157600 Gossypium hirsutum HOM05D004587 ORTHO05D005512 5.7e-26 121.3 149 45.6
MD06G1032800 Malus domestica HOM05D004587 ORTHO05D005512 5.7e-26 121.3 144 47.2
Potri.001G143600 Populus trichocarpa HOM05D004587 ORTHO05D005512 7.5e-26 120.9 152 45.4
FAN04G0466 Fragaria x ananassa HOM05D004587 ORTHO05D005512 9.8e-26 120.6 142 45.1
Manes.17G011700 Manihot esculenta HOM05D004587 ORTHO05D005512 3.7e-25 118.6 152 44.7
Dinv28943 Davidia involucrata HOM05D004587 ORTHO05D005512 4.9e-25 118.2 147 48.3
CANSAT21G0306 Cannabis sativa HOM05D004587 ORTHO05D005512 1.1e-24 117.1 151 45.0
Potri.003G090600 Populus trichocarpa HOM05D004587 ORTHO05D005512 1.8e-24 116.3 152 45.4
ClCG09G012070 Citrullus lanatus HOM05D004587 ORTHO05D005512 3.2e-24 115.5 146 47.3
FAN13G1185 Fragaria x ananassa HOM05D004587 ORTHO05D005512 3.2e-24 115.5 142 43.7
arahy.Tifrunner.gnm1.ann1.QWZQ79 Arachis hypogaea HOM05D004587 ORTHO05D005512 4.1e-24 115.2 146 40.4
arahy.Tifrunner.gnm1.ann1.VNVR7L Arachis hypogaea HOM05D004587 ORTHO05D005512 4.1e-24 115.2 146 40.4
CsaV3_3G049300 Cucumis sativus L. HOM05D004587 ORTHO05D005512 4.1e-24 115.2 146 46.6
TWI81G0220 Tripterygium wilfordii HOM05D004587 ORTHO05D005512 4.1e-24 115.2 147 46.9
Dinv25204 Davidia involucrata HOM05D004587 ORTHO05D005512 5.4e-24 114.8 146 45.9
MELO3C003396.2 Cucumis melo HOM05D004587 ORTHO05D005512 1.6e-23 113.2 146 46.6
COL.COLO4_17061 Corchorus olitorius HOM05D004587 ORTHO05D005512 3.5e-23 112.1 185 38.4
Oeu035388.1 Olea europaea HOM05D004587 ORTHO05D005512 3.5e-23 112.1 150 45.3
Eucgr.E00288 Eucalyptus grandis HOM05D004587 ORTHO05D005512 1.3e-22 110.2 157 42.0
SGA_v2.0_scaffold108G30874 Striga asiatica HOM05D004587 ORTHO05D005512 2.3e-22 109.4 154 40.3
TWI60G1364 Tripterygium wilfordii HOM05D004587 ORTHO05D005512 5.0e-22 108.2 146 43.2
GSVIVG01013197001 Vitis vinifera HOM05D004587 ORTHO05D005512 5.0e-22 108.2 148 43.2
TAR629G0873 Trochodendron aralioides HOM05D004587 ORTHO05D005512 6.6e-22 107.8 144 45.8
Sed0024230 Sechium edule HOM05D004587 ORTHO05D005512 8.6e-22 107.5 146 46.6
Hma1.2p1_0991F.1_g245040 Hydrangea macrophylla HOM05D004587 ORTHO05D005512 1.1e-21 107.1 147 46.9
Actinidia25956 Actinidia chinensis HOM05D004587 ORTHO05D005512 2.5e-21 105.9 145 44.1
ECA240G1087 Erigeron canadensis HOM05D004587 ORTHO05D005512 4.3e-21 105.1 157 39.5
Solyc06g061140.3 Solanum lycopersicum HOM05D004587 ORTHO05D005512 4.3e-21 105.1 146 44.5
Peaxi162Scf00615g00515 Petunia axillaris HOM05D004587 ORTHO05D005512 5.6e-21 104.8 147 42.2
Migut.C00969 Erythranthe guttata HOM05D004587 ORTHO05D005512 7.3e-21 104.4 159 42.1
Actinidia14814 Actinidia chinensis HOM05D004587 ORTHO05D005512 9.5e-21 104.0 147 42.2
Lalb_Chr16g0379161 Lupinus albus HOM05D004587 ORTHO05D005512 9.5e-21 104.0 104 51.0
MD16G1276500 Malus domestica HOM05D004587 ORTHO05D005512 9.5e-21 104.0 103 51.5
SGA_v2.0_scaffold195G40785 Striga asiatica HOM05D004587 ORTHO05D005512 1.2e-20 103.6 149 39.6
Nitab4.5_0001285g0020 Nicotiana tabacum HOM05D004587 ORTHO05D005512 1.6e-20 103.2 146 39.7
Psat2g173440 Pisum sativum HOM05D004587 ORTHO05D005512 1.6e-20 103.2 149 39.6
Sed0004713 Sechium edule HOM05D004587 ORTHO05D005512 1.6e-20 103.2 146 43.8
Sopen06g021340 Solanum pennellii HOM05D004587 ORTHO05D005512 2.1e-20 102.8 146 43.8
Nn6g33612 Nelumbo nucifera HOM05D004587 ORTHO05D005512 2.8e-20 102.4 144 42.4
TPR.G7834 Trifolium pratense HOM05D004587 ORTHO05D005512 2.8e-20 102.4 152 39.5
Actinidia09217 Actinidia chinensis HOM05D004587 ORTHO05D005512 4.7e-20 101.7 147 40.8
Solyc08g077040.3 Solanum lycopersicum HOM05D004587 ORTHO05D005512 4.7e-20 101.7 151 41.7
Lsat_1_v5_gn_6_64781 Lactuca sativa HOM05D004587 ORTHO05D005512 6.1e-20 101.3 152 36.8
Manes.15G168700 Manihot esculenta HOM05D004587 ORTHO05D005512 6.1e-20 101.3 162 40.1
PSO063G5829 Papaver somniferum HOM05D004587 ORTHO05D005512 6.1e-20 101.3 180 37.2
Hund14406 Selenicereus undatus HOM05D004587 ORTHO05D005512 6.1e-20 101.3 153 45.1
PGSC0003DMG402002106 Solanum tuberosum HOM05D004587 ORTHO05D005512 6.1e-20 101.3 146 43.8
CSS0021945 Camellia sinensis var. sinensis HOM05D004587 ORTHO05D005512 1.4e-19 100.1 148 43.2
CSS0032807 Camellia sinensis var. sinensis HOM05D004587 ORTHO05D005512 1.4e-19 100.1 148 43.2
Phvul.002G006600 Phaseolus vulgaris HOM05D004587 ORTHO05D005512 1.4e-19 100.1 104 49.0
Nitab4.5_0006066g0030 Nicotiana tabacum HOM05D004587 ORTHO05D005512 2.3e-19 99.4 147 42.9
Sc22g0001460 Simmondsia chinensis HOM05D004587 ORTHO05D005512 2.3e-19 99.4 147 40.1
PGSC0003DMG400017533 Solanum tuberosum HOM05D004587 ORTHO05D005512 5.2e-19 98.2 150 39.3
Duzib205G0684 Durio zibethinus HOM05D004587 ORTHO05D005512 6.8e-19 97.8 152 40.1
MSTRG.1101 Avicennia marina HOM05D004587 ORTHO05D005512 8.9e-19 97.4 150 40.0
HanXRQChr02g0043541 Helianthus annuus HOM05D004587 ORTHO05D005512 8.9e-19 97.4 148 37.2
Sopen08g025620 Solanum pennellii HOM05D004587 ORTHO05D005512 8.9e-19 97.4 151 41.1
Lj2g0006519 Lotus japonicus HOM05D004587 ORTHO05D005512 1.2e-18 97.1 146 41.1
Nitab4.5_0000256g0420 Nicotiana tabacum HOM05D004587 ORTHO05D005512 1.2e-18 97.1 147 40.8
PSO782G4837 Papaver somniferum HOM05D004587 ORTHO05D005512 1.2e-18 97.1 181 35.9
TAR375G0250 Trochodendron aralioides HOM05D004587 ORTHO05D005512 2.0e-18 96.3 144 42.4
Zm00001eb208820 Zea mays HOM05D004587 ORTHO05D005512 2.0e-18 96.3 104 50.0
DCAR_008278 Daucus carota HOM05D004587 ORTHO05D005512 2.6e-18 95.9 104 49.0
Glyma.01G199100 Glycine max HOM05D004587 ORTHO05D005512 2.6e-18 95.9 104 47.1
vmacro14165 Vaccinium macrocarpon HOM05D004587 ORTHO05D005512 4.4e-18 95.1 148 39.9
unitig_747.g21515 Utricularia gibba HOM05D006546 ORTHO05D008362 5.8e-18 94.7 99 47.5
MSTRG.25306 Avicennia marina HOM05D004587 ORTHO05D005512 7.5e-18 94.4 154 39.6
SHI31713 Sapria himalayana HOM05D000449 ORTHO05D000360 9.8e-18 94.0 142 37.3
HPP92_001567 Vanilla planifolia HOM05D004587 ORTHO05D005512 1.3e-17 93.6 148 38.5
HPP92_001722 Vanilla planifolia HOM05D004587 ORTHO05D005512 1.3e-17 93.6 148 38.5
Medtr5g014320 Medicago truncatula HOM05D004587 ORTHO05D005512 1.7e-17 93.2 147 39.5
AUR62007272 Chenopodium quinoa HOM05D004587 ORTHO05D005512 2.2e-17 92.8 155 40.6
AUR62018727 Chenopodium quinoa HOM05D004587 ORTHO05D005512 2.9e-17 92.4 153 37.9
Cc08_g02530 Coffea canephora HOM05D004587 ORTHO05D005512 2.9e-17 92.4 107 46.7
Lj2C242G4 Lonicera japonica HOM05D004587 ORTHO05D005512 2.9e-17 92.4 139 38.8
Rhsim07G0126100 Rhododendron simsii HOM05D004587 ORTHO05D005512 3.7e-17 92.0 146 39.0
Ah.07g200250 Amaranthus hybridus HOM05D004587 ORTHO05D005512 4.9e-17 91.7 153 39.9
QL12p005998 Quercus lobata HOM05D004587 ORTHO05D005512 1.9e-16 89.7 213 31.5
VMungo1215G2797 Vigna mungo HOM05D000740 ORTHO05D005071 3.2e-16 89.0 99 44.4
Os02g0128100 Oryza sativa ssp. japonica HOM05D004587 ORTHO05D005512 7.0e-16 87.8 115 40.0
Peaxi162Scf00460g00412 Petunia axillaris HOM05D004587 ORTHO05D005512 2.0e-15 86.3 151 38.4
SalBow7G3710 Salvia bowleyana HOM05D004587 ORTHO05D005512 2.0e-15 86.3 195 33.3
Aqoxy3G02401 Aquilegia oxysepala HOM05D004587 ORTHO05D005512 3.5e-15 85.5 158 39.2
EL10Ac5g12139 Beta vulgaris HOM05D004587 ORTHO05D005512 1.0e-14 84.0 150 38.0
CAN.G201.22 Capsicum annuum HOM05D004587 ORTHO05D005512 5.0e-14 81.6 149 37.6
CDE12G0528 Ceratophyllum demersum HOM05D004587 ORTHO05D005512 6.6e-14 81.3 144 35.4
HPP92_001583 Vanilla planifolia HOM05D004587 ORTHO05D005512 6.6e-14 81.3 166 33.7
ATR0049G023 Amborella trichopoda HOM05D004587 ORTHO05D005512 8.6e-14 80.9 104 41.3
Ah.12g054920 Amaranthus hybridus HOM05D004587 ORTHO05D005512 2.5e-13 79.3 152 36.8
Glyma.11G042700 Glycine max HOM05D004587 ORTHO05D005512 7.3e-13 77.8 104 41.3
ECA233G1850 Erigeron canadensis HOM05D004587 ORTHO05D005512 1.2e-12 77.0 101 40.6
Sabra01G0112000 Salix brachista HOM05D004587 ORTHO05D005512 2.1e-12 76.3 254 27.2
Sabra03G0060300 Salix brachista HOM05D004587 ORTHO05D005512 6.2e-12 74.7 231 28.1
Zm00001eb231030 Zea mays HOM05D004587 ORTHO05D005512 2.3e-11 72.8 151 33.1
AL7G30750 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 3.4e-10 68.9 67 56.7
Ciclev10033884m.g Citrus clementina HOM05D004587 ORTHO05D005512 4.4e-10 68.6 83 48.2
Lj8A293T23 Lonicera japonica HOM05D004587 ORTHO05D005512 5.8e-10 68.2 208 28.4
Mapoly0066s0035 Marchantia polymorpha HOM05D004587 ORTHO05D005512 5.8e-10 68.2 103 36.9
Cpa.g.sc90.49 Carica papaya HOM05D004587 ORTHO05D005512 7.5e-10 67.8 88 40.9
Cfa012421 Carpinus fangiana HOM05D004587 ORTHO05D005512 1.2e-07 60.5 87 39.1
Ciclev10033624m.g Citrus clementina HOM05D004587 ORTHO05D005512 2.1e-07 59.7 68 45.6
Cpa.g.sc90.47 Carica papaya HOM05D004587 ORTHO05D005512 2.7e-07 59.3 84 38.1
Haze_08255 Corylus avellana HOM05D004587 ORTHO05D005512 3.5e-07 58.9 88 37.5
Nitab4.5_0001276g0020 Nicotiana tabacum HOM05D004587 ORTHO05D005512 3.5e-07 58.9 91 35.2
Pp3c10_13670 Physcomitrium patens HOM05D004587 ORTHO05D005512 3.5e-07 58.9 103 35.0
AagrBONN_evm.TU.Sc2ySwM_228.3589 Anthoceros agrestis HOM05D004587 ORTHO05D005512 4.6e-07 58.5 110 34.5
Actinidia03381 Actinidia chinensis HOM05D004587 ORTHO05D005512 1.0e-06 57.4 78 43.6
Haze_08256 Corylus avellana HOM05D004587 ORTHO05D005512 6.6e-06 54.7 62 43.5


User provided reference genes

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