Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g31460 Brassica carinata HOM05D000157 ORTHO05D004871 8.9e-108 393.7 204 100.0
BcaC06g34363 Brassica carinata HOM05D000157 ORTHO05D004871 1.8e-84 316.2 277 66.1
C07p29900 Brassica napus HOM05D000157 ORTHO05D004871 8.9e-84 313.9 277 65.7
BolC7t43537H Brassica oleracea HOM05D000157 ORTHO05D004871 8.9e-84 313.9 277 65.7
BraA06t27447Z Brassica rapa HOM05D000157 ORTHO05D004871 2.4e-81 305.8 277 62.5
A06p45780 Brassica napus HOM05D000157 ORTHO05D004871 4.6e-80 301.6 277 62.5
BcaC06g31459 Brassica carinata HOM05D000157 ORTHO05D004871 9.0e-68 260.8 278 56.8
Sp2g11480 Schrenkiella parvula HOM05D000157 ORTHO05D004871 3.5e-56 222.2 281 50.5
AT5G46650 Arabidopsis thaliana HOM05D000157 ORTHO05D004871 4.9e-50 201.8 281 48.0
AL8G11690 Arabidopsis lyrata HOM05D000157 ORTHO05D004871 4.6e-48 195.3 281 47.7
Thhalv10001206m.g Eutrema salsugineum HOM05D000157 ORTHO05D004871 3.3e-46 189.1 284 46.1
Carub.0008s0126 Capsella rubella HOM05D000157 ORTHO05D004871 1.8e-44 183.3 279 45.2
BcaC04g21692 Brassica carinata HOM05D000157 ORTHO05D004871 3.1e-44 182.6 275 46.2
C09p28770 Brassica napus HOM05D000157 ORTHO05D004871 2.0e-43 179.9 275 45.8
BolC9t55737H Brassica oleracea HOM05D000157 ORTHO05D004871 2.0e-43 179.9 275 45.8
CARHR174850 Cardamine hirsuta HOM05D000157 ORTHO05D004871 2.2e-42 176.4 280 44.3
BcaB07g30827 Brassica carinata HOM05D000157 ORTHO05D004871 8.5e-42 174.5 282 45.7
A09p22450 Brassica napus HOM05D000157 ORTHO05D004871 6.1e-40 168.3 275 44.4
BraA09t37849Z Brassica rapa HOM05D000157 ORTHO05D004871 6.1e-40 168.3 275 44.4
Aa31LG9G6220 Aethionema arabicum HOM05D000157 ORTHO05D004871 7.2e-25 118.2 287 35.2
A01p09970 Brassica napus HOM05D000157 ORTHO05D004871 5.3e-20 102.1 102 60.8
C01p11770 Brassica napus HOM05D000157 ORTHO05D004871 5.3e-20 102.1 100 61.0
BraA01t00941Z Brassica rapa HOM05D000157 ORTHO05D004871 5.3e-20 102.1 102 60.8
BcaC09g51584 Brassica carinata HOM05D000157 ORTHO05D004871 1.6e-19 100.5 81 66.7
BolC1t01139H Brassica oleracea HOM05D000157 ORTHO05D004871 1.6e-19 100.5 81 66.7
BcaNung00043 Brassica carinata HOM05D000157 ORTHO05D004871 1.0e-18 97.8 99 57.6
Thhalv10025826m.g Eutrema salsugineum HOM05D000157 ORTHO05D004871 1.0e-18 97.8 66 72.7
AL7G36580 Arabidopsis lyrata HOM05D000157 ORTHO05D004871 1.3e-18 97.4 69 71.0
Sp7g16180 Schrenkiella parvula HOM05D000157 ORTHO05D004871 1.3e-18 97.4 64 73.4
Carub.0007s2341 Capsella rubella HOM05D000157 ORTHO05D004871 2.2e-18 96.7 69 69.6
CARHR224660 Cardamine hirsuta HOM05D000157 ORTHO05D004871 2.9e-18 96.3 238 33.2
THA.LOC104827752 Tarenaya hassleriana HOM05D000157 ORTHO05D004871 2.9e-18 96.3 93 61.3
AT4G17920 Arabidopsis thaliana HOM05D000157 ORTHO05D004871 1.5e-17 94.0 268 33.6
C07p49260 Brassica napus HOM05D000157 ORTHO05D004871 4.2e-17 92.4 79 62.0
A03p50870 Brassica napus HOM05D000157 ORTHO05D004871 9.4e-17 91.3 64 70.3
BraA03t14174Z Brassica rapa HOM05D000236 ORTHO05D004871 9.4e-17 91.3 64 70.3
BolC7t45435H Brassica oleracea HOM05D000157 ORTHO05D004871 1.6e-16 90.5 79 60.8
Aa31LG6G680 Aethionema arabicum HOM05D000157 ORTHO05D004871 1.0e-15 87.8 91 53.8
BcaC06g33617 Brassica carinata HOM05D000157 ORTHO05D004871 6.7e-15 85.1 267 28.8
Cpa.g.sc90.65 Carica papaya HOM05D000157 ORTHO05D004871 7.7e-11 71.6 255 27.5
Sed0020307 Sechium edule HOM05D000157 ORTHO05D004871 5.0e-10 68.9 72 56.9
Hma1.2p1_1379F.1_g279200 Hydrangea macrophylla HOM05D000157 ORTHO05D004871 1.5e-09 67.4 73 50.7
Hma1.2p1_0574F.1_g181550 Hydrangea macrophylla HOM05D000157 ORTHO05D004871 1.9e-09 67.0 52 63.5
MD06G1036300 Malus domestica HOM05D000157 ORTHO05D004871 1.9e-09 67.0 55 65.5
CsaV3_3G049040 Cucumis sativus L. HOM05D000157 ORTHO05D004871 2.5e-09 66.6 71 49.3
Prupe.5G033100 Prunus persica HOM05D000157 ORTHO05D004871 3.2e-09 66.2 88 45.5
MELO3C003422.2 Cucumis melo HOM05D000157 ORTHO05D004871 4.2e-09 65.9 71 47.9
Sed0020036 Sechium edule HOM05D000157 ORTHO05D004871 9.4e-09 64.7 60 56.7
COL.COLO4_17001 Corchorus olitorius HOM05D000157 ORTHO05D004871 2.1e-08 63.5 53 58.5
Ciclev10018251m.g Citrus clementina HOM05D000157 ORTHO05D004871 2.7e-08 63.2 266 24.4
Duzib068G0996 Durio zibethinus HOM05D000157 ORTHO05D004871 3.6e-08 62.8 52 63.5
Duzib084G1131 Durio zibethinus HOM05D000157 ORTHO05D004871 3.6e-08 62.8 62 56.5
RcHm_v2.0_Chr7g0210121 Rosa chinensis HOM05D000157 ORTHO05D004871 3.6e-08 62.8 128 37.5
CiPaw.12G065000 Carya illinoinensis HOM05D000157 ORTHO05D004871 8.0e-08 61.6 51 56.9
Haze_08209 Corylus avellana HOM05D000157 ORTHO05D004871 8.0e-08 61.6 86 41.9
EL10Ac5g12085 Beta vulgaris HOM05D000157 ORTHO05D004871 1.0e-07 61.2 94 41.5
Dinv28970 Davidia involucrata HOM05D000157 ORTHO05D004871 1.0e-07 61.2 52 59.6
Sc22g0001620 Simmondsia chinensis HOM05D000157 ORTHO05D004871 1.4e-07 60.8 106 41.5
Atru.chr6.1654 Acer truncatum HOM05D000157 ORTHO05D004871 2.3e-07 60.1 62 50.0
PGR083G1727 Punica granatum HOM05D000157 ORTHO05D004871 3.0e-07 59.7 111 36.9
CiPaw.11G095300 Carya illinoinensis HOM05D000157 ORTHO05D004871 4.0e-07 59.3 89 38.2
Oeu006243.1 Olea europaea HOM05D000157 ORTHO05D004871 4.0e-07 59.3 105 39.0
Peaxi162Scf00045g00110 Petunia axillaris HOM05D000157 ORTHO05D004871 4.0e-07 59.3 51 56.9
FAN08G3347 Fragaria x ananassa HOM05D000157 ORTHO05D004871 6.8e-07 58.5 94 42.6
Gohir.A12G207700 Gossypium hirsutum HOM05D000157 ORTHO05D004871 6.8e-07 58.5 102 43.1
PGSC0003DMG400017542 Solanum tuberosum HOM05D000089 ORTHO05D002844 6.8e-07 58.5 52 57.7
FvH4_5g22380 Fragaria vesca HOM05D000157 ORTHO05D004871 8.8e-07 58.2 92 42.4
FAN18G3493 Fragaria x ananassa HOM05D000157 ORTHO05D004871 8.8e-07 58.2 92 42.4
Lsat_1_v5_gn_6_4060 Lactuca sativa HOM05D000157 ORTHO05D004871 8.8e-07 58.2 55 50.9
Nitab4.5_0000556g0020 Nicotiana tabacum HOM05D000157 ORTHO05D004871 1.5e-06 57.4 202 29.2
Gorai.008G225700 Gossypium raimondii HOM05D000157 ORTHO05D004871 2.0e-06 57.0 102 43.1
Rhsim11G0016900 Rhododendron simsii HOM05D000157 ORTHO05D004871 2.0e-06 57.0 53 58.5
FAN04G2730 Fragaria x ananassa HOM05D000157 ORTHO05D004871 2.6e-06 56.6 91 41.8
Cc08_g02970 Coffea canephora HOM05D000157 ORTHO05D004871 3.4e-06 56.2 54 53.7
FAN13G0585 Fragaria x ananassa HOM05D000157 ORTHO05D004871 4.4e-06 55.8 131 35.1
Thecc.03G225200 Theobroma cacao HOM05D000157 ORTHO05D004871 4.4e-06 55.8 71 49.3
PGR031G0838 Punica granatum HOM05D000157 ORTHO05D004871 5.7e-06 55.5 97 45.4
ECA233G0790 Erigeron canadensis HOM05D004949 ORTHO05D006006 7.5e-06 55.1 136 27.9
Nitab4.5_0003568g0020 Nicotiana tabacum HOM05D000157 ORTHO05D004871 7.5e-06 55.1 106 36.8
Potri.001G140900 Populus trichocarpa HOM05D000157 ORTHO05D004871 7.5e-06 55.1 50 60.0
Sopen08g025320 Solanum pennellii HOM05D000157 ORTHO05D004871 7.5e-06 55.1 75 44.0
unitig_52.g17204 Utricularia gibba HOM05D000157 ORTHO05D004871 7.5e-06 55.1 118 33.9
AUR62010949 Chenopodium quinoa HOM05D000157 ORTHO05D004871 9.8e-06 54.7 62 46.8
FAN18G1640 Fragaria x ananassa HOM05D000157 ORTHO05D004871 9.8e-06 54.7 92 41.3


User provided reference genes

Program Settings