Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g31458 Brassica carinata HOM05D005674 ORTHO05D007015 6.7e-44 180.3 89 100.0
Sp2g11490 Schrenkiella parvula HOM05D005674 ORTHO05D007015 4.0e-28 127.9 84 78.6
AL8G11670 Arabidopsis lyrata HOM05D005674 ORTHO05D007015 8.3e-26 120.2 84 73.8
CARHR174820 Cardamine hirsuta HOM05D005674 ORTHO05D007015 8.3e-26 120.2 84 75.0
AT5G46680 Arabidopsis thaliana HOM05D005674 ORTHO05D007015 1.1e-25 119.8 84 73.8
Carub.0008s0124 Capsella rubella HOM05D005674 ORTHO05D007015 1.4e-25 119.4 84 73.8
BcaC03g16871 Brassica carinata HOM05D005674 ORTHO05D007015 2.4e-25 118.6 84 75.0
A02p30210 Brassica napus HOM05D005674 ORTHO05D007015 4.1e-25 117.9 84 75.0
C02p47730 Brassica napus HOM05D005674 ORTHO05D007015 7.0e-25 117.1 84 73.8
BolC2t10809H Brassica oleracea HOM05D005674 ORTHO05D007015 7.0e-25 117.1 84 73.8
BraA02t08037Z Brassica rapa HOM05D005674 ORTHO05D007015 7.0e-25 117.1 84 73.8
Aa31LG10G3050 Aethionema arabicum HOM05D005674 ORTHO05D007015 5.0e-23 110.9 84 67.9
Aa31LG6G670 Aethionema arabicum HOM05D005674 ORTHO05D007015 8.3e-18 93.6 78 64.1
CARHR224650 Cardamine hirsuta HOM05D005674 ORTHO05D007015 1.3e-15 86.3 84 56.0
BcaC06g33618 Brassica carinata HOM05D005674 ORTHO05D007015 1.7e-15 85.9 80 58.8
BolC7t45434H Brassica oleracea HOM05D005674 ORTHO05D007015 1.7e-15 85.9 80 58.8
Thhalv10001221m.g Eutrema salsugineum HOM05D005674 ORTHO05D007015 1.7e-15 85.9 82 58.5
Thhalv10025145m.g Eutrema salsugineum HOM05D005674 ORTHO05D007015 2.9e-15 85.1 79 59.5
AL7G36590 Arabidopsis lyrata HOM05D005674 ORTHO05D007015 6.6e-15 84.0 78 59.0
Carub.0007s2342 Capsella rubella HOM05D005674 ORTHO05D007015 6.6e-15 84.0 79 58.2
Sp7g16190 Schrenkiella parvula HOM05D005674 ORTHO05D007015 1.1e-14 83.2 74 60.8
A03p50860 Brassica napus HOM05D005674 ORTHO05D007015 1.5e-14 82.8 78 59.0
BraA03t14173Z Brassica rapa HOM05D005674 ORTHO05D007015 1.5e-14 82.8 78 59.0
C07p49250 Brassica napus HOM05D005674 ORTHO05D007015 7.2e-14 80.5 75 58.7
Duzib160G0406 Durio zibethinus HOM05D005674 ORTHO05D007015 2.6e-11 72.0 80 48.8
CiPaw.03G192600 Carya illinoinensis HOM05D005674 ORTHO05D007015 5.7e-11 70.9 80 50.0
Thecc.01G153300 Theobroma cacao HOM05D005674 ORTHO05D007015 9.8e-11 70.1 78 51.3
ClCG07G002660 Citrullus lanatus HOM05D005674 ORTHO05D007015 1.3e-10 69.7 80 46.2
Manes.09G079700 Manihot esculenta HOM05D005674 ORTHO05D007015 1.7e-10 69.3 80 47.5
CsaV3_4G030900 Cucumis sativus L. HOM05D005674 ORTHO05D007015 2.8e-10 68.6 80 45.0
CSS0001557 Camellia sinensis var. sinensis HOM05D005674 ORTHO05D007015 3.7e-10 68.2 80 48.8
Manes.08G068200 Manihot esculenta HOM05D005674 ORTHO05D007015 3.7e-10 68.2 80 47.5
Hund00863 Selenicereus undatus HOM05D005674 ORTHO05D007015 4.9e-10 67.8 79 46.8
Cpa.g.sc90.66 Carica papaya HOM05D005674 ORTHO05D007015 1.4e-09 66.2 80 48.8
Lj1P677T28 Lonicera japonica HOM05D005674 ORTHO05D007015 1.4e-09 66.2 80 46.2
MD07G1055100 Malus domestica HOM05D005674 ORTHO05D007015 1.4e-09 66.2 80 46.2
Atru.chr7.2335 Acer truncatum HOM05D005674 ORTHO05D007015 2.4e-09 65.5 80 48.8
Cfa012588 Carpinus fangiana HOM05D005674 ORTHO05D007015 2.4e-09 65.5 79 45.6
DCAR_018956 Daucus carota HOM05D005674 ORTHO05D007015 3.1e-09 65.1 80 43.8
Hma1.2p1_0067F.1_g036940 Hydrangea macrophylla HOM05D005674 ORTHO05D007015 3.1e-09 65.1 80 46.2
Sc04g0009990 Simmondsia chinensis HOM05D005674 ORTHO05D007015 4.1e-09 64.7 80 47.5
Sed0024338 Sechium edule HOM05D005674 ORTHO05D007015 7.0e-09 63.9 80 43.8
Gohir.D10G254800 Gossypium hirsutum HOM05D005674 ORTHO05D007015 9.2e-09 63.5 80 43.8
Gohir.D13G161800 Gossypium hirsutum HOM05D005674 ORTHO05D007015 9.2e-09 63.5 79 44.3
Gorai.013G183800 Gossypium raimondii HOM05D005674 ORTHO05D007015 9.2e-09 63.5 80 43.8
MD15G1427800 Malus domestica HOM05D005674 ORTHO05D007015 9.2e-09 63.5 80 43.8
Ciclev10008244m.g Citrus clementina HOM05D005674 ORTHO05D007015 1.2e-08 63.2 80 43.8
Sabra06G0005200 Salix brachista HOM05D005674 ORTHO05D007015 1.2e-08 63.2 79 43.0
THA.LOC104806715 Tarenaya hassleriana HOM05D005674 ORTHO05D007015 1.2e-08 63.2 84 45.2
Dinv12372 Davidia involucrata HOM05D005674 ORTHO05D007015 1.6e-08 62.8 78 47.4
Gorai.011G295800 Gossypium raimondii HOM05D005674 ORTHO05D007015 1.6e-08 62.8 80 42.5
Prupe.3G114500 Prunus persica HOM05D005674 ORTHO05D007015 1.6e-08 62.8 80 42.5
Sed0008626 Sechium edule HOM05D005674 ORTHO05D007015 1.6e-08 62.8 80 45.0
Gohir.A10G242800 Gossypium hirsutum HOM05D005674 ORTHO05D007015 2.0e-08 62.4 80 43.8
Rhsim04G0075800 Rhododendron simsii HOM05D005674 ORTHO05D007015 2.7e-08 62.0 80 43.8
RcHm_v2.0_Chr2g0130841 Rosa chinensis HOM05D005674 ORTHO05D007015 2.7e-08 62.0 80 43.8
QL08p042254 Quercus lobata HOM05D005674 ORTHO05D007015 4.5e-08 61.2 77 48.1
Potri.006G006500 Populus trichocarpa HOM05D005674 ORTHO05D007015 7.8e-08 60.5 79 44.3
Prupe.4G280300 Prunus persica HOM05D005674 ORTHO05D007015 7.8e-08 60.5 80 42.5
Actinidia00858 Actinidia chinensis HOM05D005674 ORTHO05D007015 1.3e-07 59.7 80 43.8
ECA240G0139 Erigeron canadensis HOM05D005674 ORTHO05D007015 2.9e-07 58.5 79 41.8
Lsat_1_v5_gn_3_116841 Lactuca sativa HOM05D005674 ORTHO05D007015 2.9e-07 58.5 80 37.5
SGA_v2.0_scaffold18G08491 Striga asiatica HOM05D005674 ORTHO05D007015 2.9e-07 58.5 80 41.2
CANSAT54G2399 Cannabis sativa HOM05D005674 ORTHO05D007015 5.0e-07 57.8 78 44.9
CAN.G1360.18 Capsicum annuum HOM05D005674 ORTHO05D007015 5.0e-07 57.8 80 42.5
Dinv11955 Davidia involucrata HOM05D005674 ORTHO05D007015 5.0e-07 57.8 73 46.6
FvH4_6g27690 Fragaria vesca HOM05D005674 ORTHO05D007015 5.0e-07 57.8 80 41.2
arahy.Tifrunner.gnm1.ann1.U482D3 Arachis hypogaea HOM05D005674 ORTHO05D007015 6.6e-07 57.4 79 38.0
TAR627G1060 Trochodendron aralioides HOM05D005674 ORTHO05D007015 6.6e-07 57.4 80 40.0
VMungo1309G1849 Vigna mungo HOM05D005674 ORTHO05D007015 8.6e-07 57.0 80 38.8
Cc05_g08520 Coffea canephora HOM05D005674 ORTHO05D007015 1.1e-06 56.6 80 40.0
PGR142G3640 Punica granatum HOM05D005674 ORTHO05D007015 1.1e-06 56.6 77 46.8
GSVIVG01024415001 Vitis vinifera HOM05D005674 ORTHO05D007015 1.1e-06 56.6 79 39.2
Gohir.A13G157000 Gossypium hirsutum HOM05D005674 ORTHO05D007015 1.5e-06 56.2 80 40.0
Lalb_Chr01g0007701 Lupinus albus HOM05D005674 ORTHO05D007015 1.5e-06 56.2 79 38.0
arahy.Tifrunner.gnm1.ann1.MAGV51 Arachis hypogaea HOM05D005674 ORTHO05D007015 1.9e-06 55.8 79 36.7
AUR62024049 Chenopodium quinoa HOM05D005674 ORTHO05D007015 1.9e-06 55.8 72 43.1
AUR62040438 Chenopodium quinoa HOM05D005674 ORTHO05D007015 1.9e-06 55.8 72 43.1
Lj3g0025693 Lotus japonicus HOM05D005674 ORTHO05D007015 1.9e-06 55.8 79 38.0
MELO3C033809.2 Cucumis melo HOM05D005674 ORTHO05D007015 2.5e-06 55.5 61 47.5
arahy.Tifrunner.gnm1.ann1.I145LQ Arachis hypogaea HOM05D005674 ORTHO05D007015 3.3e-06 55.1 61 42.6
Migut.F00129 Erythranthe guttata HOM05D005674 ORTHO05D007015 3.3e-06 55.1 80 38.8
Solyc07g055220.3 Solanum lycopersicum HOM05D005674 ORTHO05D007015 3.3e-06 55.1 80 41.2
Sopen07g027000 Solanum pennellii HOM05D005674 ORTHO05D007015 3.3e-06 55.1 80 41.2
PGSC0003DMG401020415 Solanum tuberosum HOM05D005674 ORTHO05D007015 3.3e-06 55.1 80 41.2
Glyma.03G075500 Glycine max HOM05D005674 ORTHO05D007015 4.3e-06 54.7 80 38.8


User provided reference genes

Program Settings