Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g31440 Brassica carinata HOM05D005450 ORTHO05D006880 1.6e-232 809.3 496 100.0
BolC7t43556H Brassica oleracea HOM05D005450 ORTHO05D006880 5.7e-209 731.1 500 92.6
BcaC06g34338 Brassica carinata HOM05D005450 ORTHO05D006880 1.3e-208 729.9 500 92.4
C07p30200 Brassica napus HOM05D005450 ORTHO05D006880 1.3e-208 729.9 500 92.4
A06p45580 Brassica napus HOM05D005450 ORTHO05D006880 6.3e-208 727.6 500 92.4
BraA06t27430Z Brassica rapa HOM05D005450 ORTHO05D006880 3.5e-206 721.8 500 92.0
AL8G11490 Arabidopsis lyrata HOM05D005450 ORTHO05D006880 2.7e-187 659.1 524 77.7
Sp2g11640 Schrenkiella parvula HOM05D005450 ORTHO05D006880 4.1e-183 645.2 533 72.8
Carub.0008s0107 Capsella rubella HOM05D005450 ORTHO05D006880 1.5e-180 636.7 518 77.0
Thhalv10000858m.g Eutrema salsugineum HOM05D005450 ORTHO05D006880 3.6e-179 632.1 523 74.0
AT5G46840 Arabidopsis thaliana HOM05D005450 ORTHO05D006880 5.2e-178 628.2 514 76.8
CARHR174610 Cardamine hirsuta HOM05D005450 ORTHO05D006880 1.7e-173 613.2 515 80.0
Aa31LG9G6020 Aethionema arabicum HOM05D005450 ORTHO05D006880 9.6e-148 527.7 527 64.3
THA.LOC104806699 Tarenaya hassleriana HOM05D005450 ORTHO05D006880 3.8e-120 436.0 547 54.7
Cpa.g.c28481.1 Carica papaya HOM05D005450 ORTHO05D006880 3.6e-110 402.9 404 62.4
Duzib205G1163 Durio zibethinus HOM05D005450 ORTHO05D006880 5.1e-109 399.1 396 60.1
TWI81G0857 Tripterygium wilfordii HOM05D005450 ORTHO05D006880 3.7e-107 392.9 397 60.5
Manes.15G193000 Manihot esculenta HOM05D005450 ORTHO05D006880 6.3e-107 392.1 394 58.6
VMungo1215G2703 Vigna mungo HOM05D005450 ORTHO05D006880 2.0e-105 387.1 539 49.2
Gohir.A12G207500 Gossypium hirsutum HOM05D005450 ORTHO05D006880 5.0e-104 382.5 529 48.8
Gorai.008G225500 Gossypium raimondii HOM05D005450 ORTHO05D006880 1.1e-103 381.3 530 48.9
Potri.001G140300 Populus trichocarpa HOM05D005450 ORTHO05D006880 1.4e-103 380.9 509 51.3
TWI60G0421 Tripterygium wilfordii HOM05D005450 ORTHO05D006880 2.5e-103 380.2 392 58.7
Aqoxy3G02278 Aquilegia oxysepala HOM05D005450 ORTHO05D006880 4.2e-103 379.4 405 57.5
Gohir.D12G209900 Gossypium hirsutum HOM05D005450 ORTHO05D006880 9.4e-103 378.3 530 48.5
Potri.003G093900 Populus trichocarpa HOM05D005450 ORTHO05D006880 1.2e-102 377.9 508 50.4
Prupe.5G032300 Prunus persica HOM05D005450 ORTHO05D006880 3.6e-102 376.3 397 58.7
Glyma.01G016900 Glycine max HOM05D005450 ORTHO05D006880 2.3e-101 373.6 411 57.2
PGR031G1299 Punica granatum HOM05D005450 ORTHO05D006880 2.3e-101 373.6 396 58.6
Nn3g19446 Nelumbo nucifera HOM05D005450 ORTHO05D006880 2.6e-100 370.2 397 58.4
Hund11224 Selenicereus undatus HOM05D005450 ORTHO05D006880 3.3e-100 369.8 397 56.4
Sabra01G0109200 Salix brachista HOM05D005450 ORTHO05D006880 4.4e-100 369.4 511 49.9
Thecc.03G305800 Theobroma cacao HOM05D005450 ORTHO05D006880 5.7e-100 369.0 554 46.6
MD16G1272400 Malus domestica HOM05D005450 ORTHO05D006880 9.7e-100 368.2 397 58.2
CiPaw.11G095800 Carya illinoinensis HOM05D005450 ORTHO05D006880 1.3e-99 367.9 403 57.3
MD06G1037000 Malus domestica HOM05D005450 ORTHO05D006880 2.2e-99 367.1 394 58.1
vmacro00310 Vaccinium macrocarpon HOM05D005450 ORTHO05D006880 8.2e-99 365.2 397 57.4
Lalb_Chr05g0215901 Lupinus albus HOM05D005450 ORTHO05D006880 1.4e-98 364.4 405 53.8
TAR375G0838 Trochodendron aralioides HOM05D005450 ORTHO05D006880 9.1e-98 361.7 399 57.4
Phvul.002G139900 Phaseolus vulgaris HOM05D005450 ORTHO05D006880 1.2e-97 361.3 402 56.7
CANSAT21G1200 Cannabis sativa HOM05D005450 ORTHO05D006880 1.5e-97 360.9 400 56.0
Glyma.09G205900 Glycine max HOM05D005450 ORTHO05D006880 3.4e-97 359.8 388 58.2
Hma1.2p1_0303F.1_g118850 Hydrangea macrophylla HOM05D005450 ORTHO05D006880 4.5e-97 359.4 399 57.4
FvH4_5g22460 Fragaria vesca HOM05D005450 ORTHO05D006880 1.0e-96 358.2 404 55.0
FAN18G0707 Fragaria x ananassa HOM05D005450 ORTHO05D006880 1.0e-96 358.2 404 55.0
RcHm_v2.0_Chr7g0210251 Rosa chinensis HOM05D005450 ORTHO05D006880 1.0e-96 358.2 416 53.4
arahy.Tifrunner.gnm1.ann1.95XRJP Arachis hypogaea HOM05D005450 ORTHO05D006880 1.7e-96 357.5 542 51.8
arahy.Tifrunner.gnm1.ann1.M4GMJK Arachis hypogaea HOM05D005450 ORTHO05D006880 1.7e-96 357.5 542 51.8
FAN18G2323 Fragaria x ananassa HOM05D005450 ORTHO05D006880 1.7e-96 357.5 404 54.7
Cc08_g03160 Coffea canephora HOM05D005450 ORTHO05D006880 2.2e-96 357.1 393 56.2
Migut.E00784 Erythranthe guttata HOM05D005450 ORTHO05D006880 2.9e-96 356.7 393 58.5
FAN08G0023 Fragaria x ananassa HOM05D005450 ORTHO05D006880 2.9e-96 356.7 539 47.9
EL10Ac5g12080 Beta vulgaris HOM05D005450 ORTHO05D006880 3.8e-96 356.3 524 50.0
Actinidia03357 Actinidia chinensis HOM05D005450 ORTHO05D006880 8.5e-96 355.1 399 55.4
Actinidia25982 Actinidia chinensis HOM05D005450 ORTHO05D006880 1.4e-95 354.4 399 55.1
SGA_v2.0_scaffold6G03148 Striga asiatica HOM05D005450 ORTHO05D001776 1.9e-95 354.0 409 56.0
FAN13G0945 Fragaria x ananassa HOM05D005450 ORTHO05D006880 3.2e-95 353.2 539 47.5
Hma1.2p1_0303F.1_g118860 Hydrangea macrophylla HOM05D005450 ORTHO05D006880 4.2e-95 352.8 362 59.9
MSTRG.1990 Avicennia marina HOM05D005450 ORTHO05D006880 9.4e-95 351.7 393 54.2
ECA233G1178 Erigeron canadensis HOM05D005450 ORTHO05D006880 9.4e-95 351.7 396 53.8
PSO782G2687 Papaver somniferum HOM05D005450 ORTHO05D006880 9.4e-95 351.7 407 54.8
Ciclev10014807m.g Citrus clementina HOM05D005450 ORTHO05D006880 1.2e-94 351.3 393 56.5
Eucgr.D02212 Eucalyptus grandis HOM05D005450 ORTHO05D006880 1.6e-94 350.9 399 55.9
Solyc08g076660.3 Solanum lycopersicum HOM05D005450 ORTHO05D006880 2.7e-94 350.1 417 54.2
Peaxi162Scf00170g01229 Petunia axillaris HOM05D005450 ORTHO05D006880 6.1e-94 349.0 397 54.9
FAN04G1305 Fragaria x ananassa HOM05D005450 ORTHO05D006880 7.9e-94 348.6 545 45.3
QL12p004713 Quercus lobata HOM05D005450 ORTHO05D006880 3.9e-93 346.3 397 54.9
PSO063G4121 Papaver somniferum HOM05D005450 ORTHO05D006880 5.2e-93 345.9 407 54.1
HanXRQChr13g0395441 Helianthus annuus HOM05D005450 ORTHO05D006880 6.7e-93 345.5 396 54.8
Dinv25238 Davidia involucrata HOM05D005450 ORTHO05D006880 8.8e-93 345.1 402 56.5
CSS0031650 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 1.1e-92 344.7 390 55.6
PGSC0003DMG400017545 Solanum tuberosum HOM05D005450 ORTHO05D006880 1.1e-92 344.7 399 54.9
TPR.G8114 Trifolium pratense HOM05D005450 ORTHO05D006880 3.3e-92 343.2 418 52.6
CSS0005386 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 7.4e-92 342.0 390 55.4
DCAR_008245 Daucus carota HOM05D005450 ORTHO05D006880 7.4e-92 342.0 418 53.8
unitig_699.g19789 Utricularia gibba HOM05D005450 ORTHO05D001249 7.4e-92 342.0 391 54.5
COL.COLO4_16985 Corchorus olitorius HOM05D005450 ORTHO05D006880 9.7e-92 341.7 506 50.0
AUR62018696 Chenopodium quinoa HOM05D005450 ORTHO05D006880 1.3e-91 341.3 409 53.1
Lsat_1_v5_gn_6_4021 Lactuca sativa HOM05D005450 ORTHO05D006880 1.3e-91 341.3 392 53.8
Lj2g0023622 Lotus japonicus HOM05D005450 ORTHO05D006880 1.7e-91 340.9 410 52.2
Medtr5g029900 Medicago truncatula HOM05D005450 ORTHO05D006880 1.7e-91 340.9 392 54.6
Rhsim11G0018700 Rhododendron simsii HOM05D005450 ORTHO05D006880 1.7e-91 340.9 401 54.9
Sc22g0001610 Simmondsia chinensis HOM05D005450 ORTHO05D006880 2.8e-91 340.1 377 57.0
Sopen08g025210 Solanum pennellii HOM05D005450 ORTHO05D006880 4.8e-91 339.3 414 52.7
CSS0022331 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 8.2e-91 338.6 392 55.6
MBI04_g05750_MAGBIO Magnolia biondii HOM05D005450 ORTHO05D006880 1.4e-90 337.8 392 54.1
Lj2A234T41 Lonicera japonica HOM05D005450 ORTHO05D006880 3.1e-90 336.7 483 47.6
Ca_25196_v3 Cicer arietinum L. HOM05D005450 ORTHO05D006880 5.3e-90 335.9 421 51.3
Haze_08190 Corylus avellana HOM05D005450 ORTHO05D006880 5.9e-89 332.4 401 54.1
AUR62007307 Chenopodium quinoa HOM05D005450 ORTHO05D006880 2.9e-88 330.1 511 49.9
MELO3C013841.2 Cucumis melo HOM05D005450 ORTHO05D006880 1.5e-87 327.8 412 54.4
CsaV3_3G001550 Cucumis sativus L. HOM05D005450 ORTHO05D006880 2.5e-87 327.0 412 54.1
Nitab4.5_0000353g0110 Nicotiana tabacum HOM05D005450 ORTHO05D006880 2.1e-86 323.9 396 52.3
Sed0009079 Sechium edule HOM05D005450 ORTHO05D006880 2.1e-86 323.9 533 44.7
HanXRQChr04g0099011 Helianthus annuus HOM05D005450 ORTHO05D006880 2.7e-86 323.6 389 53.5
GSVIVG01013130001 Vitis vinifera HOM05D005450 ORTHO05D006880 4.7e-86 322.8 453 48.3
Atru.chr6.1648 Acer truncatum HOM05D005450 ORTHO05D006880 8.0e-86 322.0 516 50.6
Nitab4.5_0002203g0010 Nicotiana tabacum HOM05D005450 ORTHO05D006880 1.4e-85 321.2 398 52.0
Psat2g137240 Pisum sativum HOM05D005450 ORTHO05D006880 5.2e-85 319.3 546 43.2
ClCG10G001470 Citrullus lanatus HOM05D005450 ORTHO05D006880 6.7e-85 318.9 409 52.6
HPP92_020907 Vanilla planifolia HOM05D005450 ORTHO05D006880 1.4e-82 311.2 397 51.1
Ah.12g055200 Amaranthus hybridus HOM05D005450 ORTHO05D006880 2.7e-81 307.0 456 46.3
Os03g0854300 Oryza sativa ssp. japonica HOM05D005450 ORTHO05D006880 3.8e-80 303.1 397 49.9
ATR0665G143 Amborella trichopoda HOM05D005450 ORTHO05D006880 8.5e-80 302.0 345 52.5
Zm00001eb210550 Zea mays HOM05D005450 ORTHO05D006880 8.5e-80 302.0 399 49.6
CDE11G1012 Ceratophyllum demersum HOM05D005450 ORTHO05D006880 9.4e-79 298.5 399 48.9
Lalb_Chr16g0381251 Lupinus albus HOM05D005450 ORTHO05D006880 8.0e-78 295.4 228 68.0
vmacro14185 Vaccinium macrocarpon HOM05D005450 ORTHO05D006880 8.0e-78 295.4 326 53.7
Actinidia14788 Actinidia chinensis HOM05D005450 ORTHO05D006880 8.6e-72 275.4 366 47.8
Rhsim07G0129900 Rhododendron simsii HOM05D005450 ORTHO05D006880 2.5e-71 273.9 332 52.1
Sabra03G0063000 Salix brachista HOM05D005450 ORTHO05D006880 1.4e-66 258.1 513 41.3
CSS0028579 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 8.3e-51 205.7 142 71.1
BcaC03g16894 Brassica carinata HOM05D005450 ORTHO05D006880 1.4e-50 204.9 199 62.8
AagrBONN_evm.TU.Sc2ySwM_228.2336 Anthoceros agrestis HOM05D005450 ORTHO05D006880 6.6e-48 196.1 377 37.7
Aa31sc427G40 Aethionema arabicum HOM05D005450 ORTHO05D006880 1.9e-47 194.5 187 67.9
Pp3c17_19260 Physcomitrium patens HOM05D005450 ORTHO05D006880 3.6e-46 190.3 338 40.5
CSS0022748 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 1.4e-45 188.3 133 69.9
Mapoly0168s0008 Marchantia polymorpha HOM05D005450 ORTHO05D006880 8.9e-45 185.7 403 37.0
SEGI_20635 Sequoiadendron giganteum HOM05D005450 ORTHO05D006880 5.8e-44 183.0 322 40.7
CDE11G0708 Ceratophyllum demersum HOM05D005450 ORTHO05D006880 4.9e-43 179.9 261 41.8
CBR_g19667 Chara braunii HOM05D005450 ORTHO05D006880 3.5e-41 173.7 328 38.1
BcaC03g16897 Brassica carinata HOM05D005450 ORTHO05D006880 6.2e-38 162.9 216 51.9
BolC2t10828H Brassica oleracea HOM05D005450 ORTHO05D006880 1.8e-37 161.4 207 53.1
CSS0005944 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 3.4e-36 157.1 107 72.0
C02p47920 Brassica napus HOM05D005450 ORTHO05D006880 5.8e-36 156.4 105 79.0
BolC2t10824H Brassica oleracea HOM05D005450 ORTHO05D006880 5.8e-36 156.4 105 79.0
MCO09G223 Micromonas commoda HOM05D005450 ORTHO05D006880 5.8e-36 156.4 335 37.3
C02p47970 Brassica napus HOM05D005450 ORTHO05D006880 7.6e-36 156.0 216 50.0
Cre16.g659150 Chlamydomonas reinhardtii HOM05D005450 ORTHO05D006880 9.0e-29 132.5 355 34.4
SHI51348 Sapria himalayana HOM05D005450 ORTHO05D006880 1.4e-26 125.2 251 37.5
arahy.Tifrunner.gnm1.ann1.HL18KG Arachis hypogaea HOM05D005450 ORTHO05D006880 6.2e-22 109.8 117 58.1
C09p29040 Brassica napus HOM05D005450 ORTHO05D006880 3.3e-15 87.4 122 48.4
BcaC08g44235 Brassica carinata HOM05D016962 ORTHO05D018713 7.4e-15 86.3 53 88.7
A09p46710 Brassica napus HOM05D016962 ORTHO05D018713 7.4e-15 86.3 53 88.7
C09p30520 Brassica napus HOM05D016962 ORTHO05D018713 7.4e-15 86.3 53 88.7
BolC3t21573H Brassica oleracea HOM05D016962 ORTHO05D018713 7.4e-15 86.3 53 88.7
BraA02t08058Z Brassica rapa HOM05D005450 ORTHO05D006880 9.6e-15 85.9 191 39.8
A04p16170 Brassica napus HOM05D016962 ORTHO05D018713 2.1e-14 84.7 53 86.8
BraA07t27824Z Brassica rapa HOM05D016962 ORTHO05D018713 2.1e-14 84.7 53 86.8
BcaC01g01512 Brassica carinata HOM05D016962 ORTHO05D018713 3.7e-14 84.0 53 86.8
BolC2t09527H Brassica oleracea HOM05D016962 ORTHO05D018713 3.7e-14 84.0 53 86.8
SEGI_27441 Sequoiadendron giganteum HOM05D005450 ORTHO05D006880 4.8e-14 83.6 142 43.0
Actinidia09179 Actinidia chinensis HOM05D005450 ORTHO05D006880 1.2e-12 79.0 67 59.7
Cfa024331 Carpinus fangiana HOM05D005450 ORTHO05D006880 2.6e-12 77.8 401 28.7
Lj2P235T37 Lonicera japonica HOM05D005450 ORTHO05D006880 1.3e-11 75.5 187 38.5
BcaB02g06729 Brassica carinata HOM05D000297 ORTHO05D000336 3.8e-11 73.9 47 80.9
Cfa024074 Carpinus fangiana HOM05D000374 ORTHO05D000238 2.4e-10 71.2 194 29.4
MSTRG.23540 Avicennia marina HOM05D000428 ORTHO05D005608 5.6e-07 60.1 235 26.0
Oeu037891.1 Olea europaea HOM05D000428 ORTHO05D005608 5.6e-07 60.1 209 25.8
unitig_736.g22538 Utricularia gibba HOM05D000428 ORTHO05D005608 5.6e-07 60.1 238 26.1
Cre06.g254800 Chlamydomonas reinhardtii HOM05D000428 ORTHO05D005608 1.3e-06 58.9 219 26.9
Cfa017067 Carpinus fangiana HOM05D000428 ORTHO05D005608 2.1e-06 58.2 205 28.8
FAN26G0896 Fragaria x ananassa HOM05D000285 ORTHO05D000241 2.1e-06 58.2 198 22.2
Prupe.2G134600 Prunus persica HOM05D000428 ORTHO05D005608 2.1e-06 58.2 238 24.4
Hund16583 Selenicereus undatus HOM05D000428 ORTHO05D005608 2.1e-06 58.2 239 25.5
Carub.0003s3271 Capsella rubella HOM05D000428 ORTHO05D005608 2.8e-06 57.8 231 24.7
ATR0733G122 Amborella trichopoda HOM05D000428 ORTHO05D005608 3.7e-06 57.4 245 26.5
FAN28G2200 Fragaria x ananassa HOM05D000285 ORTHO05D000241 3.7e-06 57.4 198 22.2
PSO541G5970 Papaver somniferum HOM05D000428 ORTHO05D005608 3.7e-06 57.4 214 26.2
Cc07_g09270 Coffea canephora HOM05D000428 ORTHO05D005608 4.8e-06 57.0 235 25.1
Migut.L00293 Erythranthe guttata HOM05D000428 ORTHO05D005608 4.8e-06 57.0 238 24.8
FAN10G3598 Fragaria x ananassa HOM05D000428 ORTHO05D005608 4.8e-06 57.0 237 24.5
CANSAT01G1769 Cannabis sativa HOM05D000428 ORTHO05D005608 6.2e-06 56.6 237 24.9
PSO675G4237 Papaver somniferum HOM05D000428 ORTHO05D005608 6.2e-06 56.6 214 26.2
RcHm_v2.0_Chr1g0348441 Rosa chinensis HOM05D000428 ORTHO05D005608 6.2e-06 56.6 237 24.5
Hund14143 Selenicereus undatus HOM05D000428 ORTHO05D005608 6.2e-06 56.6 238 25.6
AL3G51840 Arabidopsis lyrata HOM05D000428 ORTHO05D005608 8.2e-06 56.2 231 24.2
BcaB07g31661 Brassica carinata HOM05D000428 ORTHO05D005608 8.2e-06 56.2 234 25.2
Ca_19429_v3 Cicer arietinum L. HOM05D000142 ORTHO05D001253 8.2e-06 56.2 204 28.4
FvH4_7g10600 Fragaria vesca HOM05D000428 ORTHO05D005608 8.2e-06 56.2 237 24.5
FAN06G0286 Fragaria x ananassa HOM05D000428 ORTHO05D005608 8.2e-06 56.2 237 24.5
FAN06G3568 Fragaria x ananassa HOM05D000428 ORTHO05D005608 8.2e-06 56.2 237 24.5
Gohir.A10G094825 Gossypium hirsutum HOM05D000428 ORTHO05D005608 8.2e-06 56.2 212 25.0
MD07G1111200 Malus domestica HOM05D000428 ORTHO05D005608 8.2e-06 56.2 238 24.4


User provided reference genes

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