Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g31439 Brassica carinata HOM05D005023 ORTHO05D006009 1.3e-160 569.7 293 100.0
BolC7t43557H Brassica oleracea HOM05D005023 ORTHO05D006009 1.2e-134 483.4 296 86.5
BcaC06g34337 Brassica carinata HOM05D005023 ORTHO05D006009 1.6e-134 483.0 296 86.1
C07p30210 Brassica napus HOM05D005023 ORTHO05D006009 1.6e-134 483.0 296 86.1
BraA06t27429Z Brassica rapa HOM05D005023 ORTHO05D006009 1.1e-132 476.9 297 85.9
A06p45570 Brassica napus HOM05D005023 ORTHO05D006009 2.5e-132 475.7 297 85.5
Thhalv10000976m.g Eutrema salsugineum HOM05D005023 ORTHO05D006009 1.0e-120 437.2 300 77.0
Sp2g11650 Schrenkiella parvula HOM05D005023 ORTHO05D006009 1.3e-115 420.2 298 76.8
AT5G46850 Arabidopsis thaliana HOM05D005023 ORTHO05D006009 1.7e-112 409.8 301 74.1
AL8G11450 Arabidopsis lyrata HOM05D005023 ORTHO05D006009 2.2e-107 392.9 303 70.6
Carub.0008s0106 Capsella rubella HOM05D005023 ORTHO05D006009 5.3e-106 388.3 301 69.4
CARHR174600 Cardamine hirsuta HOM05D005023 ORTHO05D006009 4.7e-102 375.2 302 68.2
Aa31sc182G50 Aethionema arabicum HOM05D005023 ORTHO05D006009 7.0e-98 361.3 303 64.7
THA.LOC104806696 Tarenaya hassleriana HOM05D005023 ORTHO05D006009 3.9e-80 302.4 299 58.9
COL.COLO4_16967 Corchorus olitorius HOM05D005023 ORTHO05D006009 1.3e-54 217.6 311 42.4
QL12p004398 Quercus lobata HOM05D005023 ORTHO05D006009 4.0e-53 212.6 302 43.4
Thecc.03G307500 Theobroma cacao HOM05D005023 ORTHO05D006009 2.0e-52 210.3 307 42.0
Duzib084G0965 Durio zibethinus HOM05D005023 ORTHO05D006009 2.2e-51 206.8 302 43.4
Ca_22661_v3 Cicer arietinum L. HOM05D005023 ORTHO05D006009 1.1e-50 204.5 285 44.9
Potri.003G095200 Populus trichocarpa HOM05D005023 ORTHO05D006009 1.4e-50 204.1 293 43.0
Lsat_1_v5_gn_6_80180 Lactuca sativa HOM05D005023 ORTHO05D006009 1.2e-49 201.1 280 41.1
Ciclev10016033m.g Citrus clementina HOM05D005023 ORTHO05D006009 1.6e-49 200.7 288 42.0
Gohir.D12G209350 Gossypium hirsutum HOM05D005023 ORTHO05D006009 3.5e-49 199.5 294 43.2
Prupe.5G030700 Prunus persica HOM05D005023 ORTHO05D006009 3.5e-49 199.5 292 43.5
Gorai.008G224900 Gossypium raimondii HOM05D005023 ORTHO05D006009 7.8e-49 198.4 304 42.4
Cpa.g.sc90.15 Carica papaya HOM05D005023 ORTHO05D006009 1.0e-48 198.0 277 41.9
Gohir.A12G206900 Gossypium hirsutum HOM05D005023 ORTHO05D006009 1.0e-48 198.0 304 42.4
TPR.G14159 Trifolium pratense HOM05D005023 ORTHO05D006009 3.0e-48 196.4 291 42.6
Actinidia09175 Actinidia chinensis HOM05D005023 ORTHO05D006009 3.9e-48 196.1 293 41.6
CANSAT54G0648 Cannabis sativa HOM05D005023 ORTHO05D006009 6.6e-48 195.3 285 41.4
Medtr8g066330 Medicago truncatula HOM05D005023 ORTHO05D006009 6.6e-48 195.3 320 40.0
CiPaw.11G096900 Carya illinoinensis HOM05D005023 ORTHO05D006009 1.1e-47 194.5 309 40.5
CSS0008599 Camellia sinensis var. sinensis HOM05D005023 ORTHO05D006009 1.5e-47 194.1 281 42.0
arahy.Tifrunner.gnm1.ann1.J93PEP Arachis hypogaea HOM05D005023 ORTHO05D006009 1.9e-47 193.7 309 40.1
Aqoxy1G01584 Aquilegia oxysepala HOM05D005023 ORTHO05D006009 2.5e-47 193.4 274 44.2
RcHm_v2.0_Chr7g0211361 Rosa chinensis HOM05D005023 ORTHO05D006009 2.5e-47 193.4 287 41.8
Manes.02G223400 Manihot esculenta HOM05D005023 ORTHO05D006009 4.3e-47 192.6 303 40.6
Hma1.2p1_2161F.1_g315620 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 9.6e-47 191.4 299 42.1
arahy.Tifrunner.gnm1.ann1.6CH5L4 Arachis hypogaea HOM05D005023 ORTHO05D006009 1.3e-46 191.0 309 40.5
arahy.Tifrunner.gnm1.ann1.NK2KWA Arachis hypogaea HOM05D005023 ORTHO05D006009 1.6e-46 190.7 309 40.5
Cc08_g03230 Coffea canephora HOM05D005023 ORTHO05D006009 1.6e-46 190.7 257 44.0
Dinv28986 Davidia involucrata HOM05D005023 ORTHO05D006009 1.6e-46 190.7 307 41.4
CAN.G298.60 Capsicum annuum HOM05D005023 ORTHO05D006009 2.1e-46 190.3 247 44.1
CAN.G298.61 Capsicum annuum HOM05D005023 ORTHO05D006009 2.1e-46 190.3 247 44.1
CAN.G726.32 Capsicum annuum HOM05D005023 ORTHO05D006009 2.1e-46 190.3 247 44.1
Lalb_Chr25g0286701 Lupinus albus HOM05D005023 ORTHO05D006009 2.1e-46 190.3 288 41.3
Peaxi162Scf00170g00918 Petunia axillaris HOM05D005023 ORTHO05D006009 2.1e-46 190.3 307 41.0
Nitab4.5_0002380g0110 Nicotiana tabacum HOM05D005023 ORTHO05D006009 2.8e-46 189.9 263 45.2
Phvul.009G009200 Phaseolus vulgaris HOM05D005023 ORTHO05D006009 2.8e-46 189.9 281 43.1
ECA240G3323 Erigeron canadensis HOM05D005023 ORTHO05D006009 3.6e-46 189.5 255 41.6
Psat4g122280 Pisum sativum HOM05D005023 ORTHO05D006009 3.6e-46 189.5 261 44.4
PGSC0003DMG400014810 Solanum tuberosum HOM05D005023 ORTHO05D006009 3.6e-46 189.5 289 42.9
Solyc08g076570.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 8.1e-46 188.3 291 43.3
Atru.chr12.846 Acer truncatum HOM05D005023 ORTHO05D006009 1.1e-45 188.0 290 40.0
MD06G1038100 Malus domestica HOM05D005023 ORTHO05D006009 1.1e-45 188.0 287 40.1
Sopen08g025130 Solanum pennellii HOM05D005023 ORTHO05D006009 1.1e-45 188.0 291 43.3
Lj6g0028231 Lotus japonicus HOM05D005023 ORTHO05D006009 2.4e-45 186.8 294 39.8
Hund11209 Selenicereus undatus HOM05D005023 ORTHO05D006009 2.4e-45 186.8 294 41.5
TWI60G0688 Tripterygium wilfordii HOM05D005023 ORTHO05D006009 4.0e-45 186.0 270 41.9
FvH4_5g22760 Fragaria vesca HOM05D005023 ORTHO05D006009 6.9e-45 185.3 286 39.9
FAN18G3597 Fragaria x ananassa HOM05D005023 ORTHO05D006009 6.9e-45 185.3 286 39.9
GSVIVG01013101001 Vitis vinifera HOM05D005023 ORTHO05D006009 9.0e-45 184.9 264 40.9
Cfa012488 Carpinus fangiana HOM05D005023 ORTHO05D006009 1.2e-44 184.5 310 38.7
HanXRQChr03g0083581 Helianthus annuus HOM05D005023 ORTHO05D006009 1.2e-44 184.5 253 39.5
AUR62033976 Chenopodium quinoa HOM05D005023 ORTHO05D006009 1.5e-44 184.1 258 43.0
Sabra01G0107600 Salix brachista HOM05D005023 ORTHO05D006009 1.5e-44 184.1 309 40.8
FAN18G4268 Fragaria x ananassa HOM05D005023 ORTHO05D006009 3.4e-44 183.0 286 39.5
Nitab4.5_0004669g0010 Nicotiana tabacum HOM05D005023 ORTHO05D006009 4.5e-44 182.6 252 46.0
Migut.E00780 Erythranthe guttata HOM05D005023 ORTHO05D006009 7.6e-44 181.8 264 43.2
FAN13G2198 Fragaria x ananassa HOM05D005023 ORTHO05D006009 9.9e-44 181.4 286 39.2
FAN13G2978 Fragaria x ananassa HOM05D005023 ORTHO05D006009 9.9e-44 181.4 286 39.2
PGR042G2438 Punica granatum HOM05D005023 ORTHO05D006009 9.9e-44 181.4 255 41.2
DCAR_031128 Daucus carota HOM05D005023 ORTHO05D006009 1.3e-43 181.0 255 43.5
FAN08G0704 Fragaria x ananassa HOM05D005023 ORTHO05D006009 1.3e-43 181.0 286 39.2
Nitab4.5_0000353g0050 Nicotiana tabacum HOM05D005023 ORTHO05D006009 1.3e-43 181.0 255 44.7
SalBow6G6255 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.8e-43 179.5 244 44.3
Glyma.04G013700 Glycine max HOM05D005023 ORTHO05D006009 4.9e-43 179.1 243 44.9
SalBow6G4088 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.9e-43 179.1 252 43.7
Eucgr.E00250 Eucalyptus grandis HOM05D005023 ORTHO05D006009 8.4e-43 178.3 311 38.6
EL10Ac8g19220 Beta vulgaris HOM05D005023 ORTHO05D006009 1.1e-42 177.9 300 37.7
Glyma.06G013600 Glycine max HOM05D005023 ORTHO05D006009 1.1e-42 177.9 287 41.1
SalBow6G4332 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.1e-42 177.9 242 43.4
SalBow8G0269 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.1e-42 177.9 243 44.9
Nitab4.5_0004839g0010 Nicotiana tabacum HOM05D005023 ORTHO05D006009 1.4e-42 177.6 251 43.0
PSO170G6706 Papaver somniferum HOM05D005023 ORTHO05D006009 1.4e-42 177.6 301 38.9
Psat4g122680 Pisum sativum HOM05D005023 ORTHO05D006009 1.4e-42 177.6 244 45.1
SalBow6G6031 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.4e-42 177.6 244 43.9
SalBow6G6846 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.4e-42 177.6 244 43.9
vmacro00304 Vaccinium macrocarpon HOM05D005023 ORTHO05D006009 1.4e-42 177.6 199 46.7
SalBow6G2872 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.9e-42 177.2 244 43.9
SalBow6G3389 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.9e-42 177.2 244 43.9
SalBow6G3524 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.9e-42 177.2 244 43.9
SalBow6G3383 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.2e-42 176.4 244 43.4
SalBow6G6227 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.2e-42 176.4 244 43.4
Sabra03G0064200 Salix brachista HOM05D005023 ORTHO05D006009 5.4e-42 175.6 214 47.2
Rhsim07G0130800 Rhododendron simsii HOM05D005023 ORTHO05D006009 7.1e-42 175.3 289 39.4
SalBow6G1717 Salvia bowleyana HOM05D005023 ORTHO05D006009 7.1e-42 175.3 244 43.4
Ah.12g065340 Amaranthus hybridus HOM05D005023 ORTHO05D006009 1.6e-41 174.1 246 41.9
Lj2A234G45 Lonicera japonica HOM05D005023 ORTHO05D006009 2.7e-41 173.3 282 39.0
SGA_v2.0_scaffold6G03150 Striga asiatica HOM05D005023 ORTHO05D006009 4.6e-41 172.6 290 39.3
Actinidia25987 Actinidia chinensis HOM05D005023 ORTHO05D006009 6.0e-41 172.2 256 42.2
PSO302G0152 Papaver somniferum HOM05D005023 ORTHO05D006009 7.9e-41 171.8 301 38.2
PSO782G3892 Papaver somniferum HOM05D005023 ORTHO05D006009 7.9e-41 171.8 294 38.8
SalBow6G3781 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.3e-38 164.5 191 48.7
Haze_08177 Corylus avellana HOM05D005023 ORTHO05D006009 1.8e-37 160.6 230 42.6
TPR.G3350 Trifolium pratense HOM05D005023 ORTHO05D006009 1.8e-37 160.6 226 42.9
MBI02_g28332_MAGBIO Magnolia biondii HOM05D005023 ORTHO05D006009 6.9e-37 158.7 296 37.5
MSTRG.1995 Avicennia marina HOM05D005023 ORTHO05D006009 2.0e-36 157.1 252 42.5
arahy.Tifrunner.gnm1.ann1.GAHP45 Arachis hypogaea HOM05D005023 ORTHO05D006009 2.6e-36 156.8 321 34.3
Nn7g38116 Nelumbo nucifera HOM05D005023 ORTHO05D006009 1.7e-35 154.1 278 37.1
Sed0002054 Sechium edule HOM05D005023 ORTHO05D006009 4.9e-35 152.5 246 40.2
PSO063G5178 Papaver somniferum HOM05D005023 ORTHO05D006009 1.4e-34 151.0 168 48.8
ClCG04G001320 Citrullus lanatus HOM05D005023 ORTHO05D006009 4.2e-34 149.4 251 41.4
FAN04G1126 Fragaria x ananassa HOM05D005023 ORTHO05D006009 1.2e-33 147.9 205 41.0
CDE02G4581 Ceratophyllum demersum HOM05D005023 ORTHO05D006009 4.6e-33 146.0 293 36.2
Zm00001eb030880 Zea mays HOM05D005023 ORTHO05D006009 7.9e-33 145.2 205 40.5
Os12g0596900 Oryza sativa ssp. japonica HOM05D005023 ORTHO05D006009 1.1e-31 141.4 203 38.9
unitig_21.g20893 Utricularia gibba HOM05D005023 ORTHO05D004745 6.2e-30 135.6 214 41.6
SalBow6G0983 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.1e-29 134.8 212 40.6
Sc01g0007280 Simmondsia chinensis HOM05D005023 ORTHO05D006009 5.3e-29 132.5 258 36.0
SHI20240 Sapria himalayana HOM05D000452 ORTHO05D000647 9.0e-29 131.7 279 33.3
CsaV3_1G033210 Cucumis sativus L. HOM05D000021 ORTHO05D000010 3.4e-28 129.8 216 38.9
SalBow6G5471 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.5e-28 129.4 183 42.1
Hma1.2p1_1594F.1_g292650 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 7.6e-28 128.6 210 42.4
HPP92_014902 Vanilla planifolia HOM05D005023 ORTHO05D006009 1.3e-27 127.9 284 32.7
SalBow6G0969 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.2e-27 127.1 164 45.1
HPP92_014897 Vanilla planifolia HOM05D005023 ORTHO05D006009 1.4e-26 124.4 285 31.9
SalBow6G1311 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.9e-26 124.0 164 44.5
ATR0580G166 Amborella trichopoda HOM05D005237 ORTHO05D006189 4.2e-26 122.9 169 42.6
Solyc08g076550.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 1.2e-25 121.3 142 48.6
SalBow6G6268 Salvia bowleyana HOM05D005023 ORTHO05D006009 7.9e-25 118.6 146 45.9
Hma1.2p1_2161F.1_g315630 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 3.9e-24 116.3 151 48.3
SalBow6G0951 Salvia bowleyana HOM05D005023 ORTHO05D006009 8.7e-24 115.2 135 45.9
MELO3C033076.2 Cucumis melo HOM05D005023 ORTHO05D006009 1.1e-21 108.2 237 35.0
Mapoly0088s0063 Marchantia polymorpha HOM05D005023 ORTHO05D006009 4.1e-21 106.3 218 32.6
Actinidia09177 Actinidia chinensis HOM05D005023 ORTHO05D006009 4.2e-18 96.3 263 30.4
SMO358G0075 Selaginella moellendorffii HOM05D005023 ORTHO05D006009 2.7e-17 93.6 195 34.4
Hma1.2p1_0572F.1_g181170 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 4.6e-17 92.8 128 46.1
AagrBONN_evm.TU.Sc2ySwM_344.1294 Anthoceros agrestis HOM05D005023 ORTHO05D006009 2.8e-14 83.6 152 34.9
Pp3c13_7870 Physcomitrium patens HOM05D005023 ORTHO05D006009 4.8e-14 82.8 202 30.7
CSS0036970 Camellia sinensis var. sinensis HOM05D005023 ORTHO05D006009 1.7e-11 74.3 91 40.7
TAR375G0008 Trochodendron aralioides HOM05D005023 ORTHO05D006009 6.1e-09 65.9 212 28.8
SalBow6G7173 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.4e-07 59.7 90 41.1
MELO3C011047.2 Cucumis melo HOM05D005023 ORTHO05D006009 2.8e-06 57.0 100 39.0


User provided reference genes

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