Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g31426 Brassica carinata HOM05D008727 ORTHO05D011379 1.6e-100 369.4 187 100.0
A06p45400 Brassica napus HOM05D008727 ORTHO05D011379 4.6e-79 298.1 182 81.9
BraA06t27408Z Brassica rapa HOM05D008727 ORTHO05D011379 7.9e-79 297.4 182 81.3
C07p30620 Brassica napus HOM05D008727 ORTHO05D011379 2.3e-78 295.8 182 81.9
BcaC06g34299 Brassica carinata HOM05D008727 ORTHO05D011379 1.5e-77 293.1 182 80.8
BolC7t43602H Brassica oleracea HOM05D008727 ORTHO05D011379 5.7e-77 291.2 182 80.8
BraA06t27409Z Brassica rapa HOM05D008727 ORTHO05D011379 7.7e-66 254.2 183 70.5
A06p45410 Brassica napus HOM05D008727 ORTHO05D011379 1.3e-65 253.4 182 70.9
BcaC06g34300 Brassica carinata HOM05D008727 ORTHO05D011379 2.9e-65 252.3 183 69.9
C07p30610 Brassica napus HOM05D008727 ORTHO05D011379 3.8e-65 251.9 183 69.9
BolC7t43601H Brassica oleracea HOM05D008727 ORTHO05D011379 3.8e-65 251.9 183 69.9
BcaC06g31427 Brassica carinata HOM05D008727 ORTHO05D011379 5.5e-64 248.1 181 69.6
BcaB07g30480 Brassica carinata HOM05D008727 ORTHO05D011379 2.0e-61 239.6 182 69.2
BolC9t60173H Brassica oleracea HOM05D008727 ORTHO05D011379 2.0e-58 229.6 176 68.2
A06p45420 Brassica napus HOM05D008727 ORTHO05D011379 2.6e-58 229.2 174 69.0
BraA06t27410Z Brassica rapa HOM05D008727 ORTHO05D011379 2.6e-58 229.2 174 69.0
C09p74390 Brassica napus HOM05D008727 ORTHO05D011379 5.9e-58 228.0 176 67.6
BraA10t45379Z Brassica rapa HOM05D008727 ORTHO05D011379 3.8e-57 225.3 181 65.7
BcaC06g31428 Brassica carinata HOM05D008727 ORTHO05D011379 8.5e-57 224.2 162 71.6
A10p33490 Brassica napus HOM05D008727 ORTHO05D011379 9.4e-56 220.7 181 65.7
BcaNung04448 Brassica carinata HOM05D008727 ORTHO05D011379 1.9e-48 196.4 135 72.6
Thhalv10001116m.g Eutrema salsugineum HOM05D008727 ORTHO05D011379 5.5e-48 194.9 178 57.9
AL1G65050 Arabidopsis lyrata HOM05D008727 ORTHO05D011379 1.8e-43 179.9 175 54.9
AT1G54620 Arabidopsis thaliana HOM05D008727 ORTHO05D011379 1.2e-42 177.2 175 54.9
Carub.0002s0896 Capsella rubella HOM05D008727 ORTHO05D011379 3.5e-42 175.6 183 52.5
Sp2g11770 Schrenkiella parvula HOM05D008727 ORTHO05D011379 3.8e-41 172.2 176 54.0
Sp2g11780 Schrenkiella parvula HOM05D008727 ORTHO05D001261 1.4e-38 163.7 173 53.2
AT5G46990 Arabidopsis thaliana HOM05D008727 ORTHO05D011379 1.8e-38 163.3 177 49.7
Thhalv10001202m.g Eutrema salsugineum HOM05D008727 ORTHO05D001261 4.0e-38 162.2 174 51.1
Carub.0008s0084 Capsella rubella HOM05D008727 ORTHO05D011379 5.7e-37 158.3 176 48.9
Carub.0008s0086 Capsella rubella HOM05D008727 ORTHO05D011379 7.5e-37 157.9 177 46.9
AT5G46980 Arabidopsis thaliana HOM05D008727 ORTHO05D011379 2.9e-36 156.0 175 50.9
Sp2g11790 Schrenkiella parvula HOM05D008727 ORTHO05D001261 3.2e-35 152.5 176 49.4
CARHR055710 Cardamine hirsuta HOM05D008727 ORTHO05D011379 1.9e-32 143.3 175 46.9
Carub.0008s0088 Capsella rubella HOM05D008727 ORTHO05D011379 3.3e-32 142.5 164 48.8
BcaC03g16915 Brassica carinata HOM05D008727 ORTHO05D023847 1.2e-31 140.6 177 48.6
C02p48180 Brassica napus HOM05D008727 ORTHO05D023847 1.2e-31 140.6 177 48.6
BolC2t10850H Brassica oleracea HOM05D008727 ORTHO05D023847 4.7e-31 138.7 177 48.0
BraA02t08079Z Brassica rapa HOM05D008727 ORTHO05D023847 1.0e-30 137.5 177 48.0
A02p30610 Brassica napus HOM05D008727 ORTHO05D023847 1.4e-30 137.1 177 48.0
BcaC06g34301 Brassica carinata HOM05D008727 ORTHO05D011379 3.7e-28 129.0 117 60.7
AL8G11310 Arabidopsis lyrata HOM05D001445 ORTHO05D001261 2.3e-22 109.8 176 40.3
Carub.0008s0089 Capsella rubella HOM05D001445 ORTHO05D001261 1.7e-20 103.6 176 38.1
Aa31LG9G5990 Aethionema arabicum HOM05D001445 ORTHO05D001261 2.9e-20 102.8 172 38.4
AT5G46970 Arabidopsis thaliana HOM05D001445 ORTHO05D001261 6.4e-20 101.7 166 39.2
Aa31sc241G60 Aethionema arabicum HOM05D001445 ORTHO05D001261 5.4e-19 98.6 173 35.3
AL8G11340 Arabidopsis lyrata HOM05D001445 ORTHO05D001261 2.1e-18 96.7 177 36.2
AT5G46930 Arabidopsis thaliana HOM05D001445 ORTHO05D001261 2.1e-18 96.7 174 37.9
Aa31sc241G40 Aethionema arabicum HOM05D001445 ORTHO05D001261 4.6e-18 95.5 173 34.7
Sp2g11740 Schrenkiella parvula HOM05D001445 ORTHO05D001261 1.3e-17 94.0 173 35.3
CARHR174500 Cardamine hirsuta HOM05D001445 ORTHO05D001261 2.3e-17 93.2 175 34.3
BcaB07g30808 Brassica carinata HOM05D001445 ORTHO05D001261 8.6e-17 91.3 175 37.1
BcaC03g16912 Brassica carinata HOM05D001445 ORTHO05D001261 1.1e-16 90.9 175 37.1
C02p48140 Brassica napus HOM05D001445 ORTHO05D001261 1.1e-16 90.9 175 37.1
C03p62420 Brassica napus HOM05D001445 ORTHO05D001261 1.1e-16 90.9 173 37.0
BolC2t10846H Brassica oleracea HOM05D001445 ORTHO05D001261 1.1e-16 90.9 175 37.1
AL8G11300 Arabidopsis lyrata HOM05D008727 ORTHO05D011379 1.5e-16 90.5 134 41.0
AL8G11330 Arabidopsis lyrata HOM05D001445 ORTHO05D001261 1.9e-16 90.1 179 35.8
C02p47650 Brassica napus HOM05D001445 ORTHO05D001261 1.9e-16 90.1 175 35.4
BolC2t10801H Brassica oleracea HOM05D001445 ORTHO05D001261 1.9e-16 90.1 175 35.4
Sp2g11760 Schrenkiella parvula HOM05D001445 ORTHO05D001261 1.9e-16 90.1 176 36.9
A02p30560 Brassica napus HOM05D001445 ORTHO05D001261 2.5e-16 89.7 172 37.8
Thhalv10001100m.g Eutrema salsugineum HOM05D001445 ORTHO05D001261 3.3e-16 89.4 177 36.2
BolC3t18500H Brassica oleracea HOM05D001445 ORTHO05D001261 5.6e-16 88.6 172 34.3
Carub.0008s0090 Capsella rubella HOM05D001445 ORTHO05D001261 5.6e-16 88.6 176 35.8
A02p30180 Brassica napus HOM05D001445 ORTHO05D001261 1.6e-15 87.0 175 35.4
BcaC03g16868 Brassica carinata HOM05D001445 ORTHO05D001261 2.1e-15 86.7 175 35.4
AT5G46940 Arabidopsis thaliana HOM05D001445 ORTHO05D001261 2.8e-15 86.3 176 36.4
BcaC03g16913 Brassica carinata HOM05D001445 ORTHO05D001261 3.6e-15 85.9 172 35.5
C02p48150 Brassica napus HOM05D001445 ORTHO05D001261 3.6e-15 85.9 172 35.5
BolC2t10847H Brassica oleracea HOM05D001445 ORTHO05D001261 3.6e-15 85.9 172 35.5
BraA02t08034Z Brassica rapa HOM05D001445 ORTHO05D001261 3.6e-15 85.9 175 35.4
Thhalv10001199m.g Eutrema salsugineum HOM05D001445 ORTHO05D001261 3.6e-15 85.9 175 34.9
Sp2g11720 Schrenkiella parvula HOM05D001445 ORTHO05D001261 6.2e-15 85.1 177 34.5
TWI15G1112 Tripterygium wilfordii HOM05D001445 ORTHO05D001261 8.1e-15 84.7 162 32.7
Carub.0008s0091 Capsella rubella HOM05D001445 ORTHO05D001261 1.1e-14 84.3 174 35.1
Thhalv10001105m.g Eutrema salsugineum HOM05D001445 ORTHO05D001261 1.4e-14 84.0 174 34.5
CARHR174480 Cardamine hirsuta HOM05D001445 ORTHO05D001261 1.8e-14 83.6 160 36.9
Sp2g11750 Schrenkiella parvula HOM05D001445 ORTHO05D001261 1.8e-14 83.6 172 34.3
A02p30590 Brassica napus HOM05D001445 ORTHO05D001261 4.0e-14 82.4 175 33.7
BraA02t08073Z Brassica rapa HOM05D001445 ORTHO05D001261 4.0e-14 82.4 174 36.8
Carub.0008s0092 Capsella rubella HOM05D001445 ORTHO05D001261 4.0e-14 82.4 177 33.3
C02p48090 Brassica napus HOM05D001445 ORTHO05D001261 6.8e-14 81.6 177 34.5
BolC2t10840H Brassica oleracea HOM05D001445 ORTHO05D001261 6.8e-14 81.6 177 34.5
A02p30580 Brassica napus HOM05D001445 ORTHO05D001261 1.2e-13 80.9 177 35.6
COL.COLO4_17127 Corchorus olitorius HOM05D001445 ORTHO05D001261 1.2e-13 80.9 158 32.3
BraA02t08076Z Brassica rapa HOM05D001445 ORTHO05D001261 1.5e-13 80.5 177 35.6
BcaB01g05448 Brassica carinata HOM05D001445 ORTHO05D001261 7.6e-13 78.2 171 30.4
Gohir.D07G130900 Gossypium hirsutum HOM05D001445 ORTHO05D001261 9.9e-13 77.8 154 31.8
Gorai.001G141800 Gossypium raimondii HOM05D001445 ORTHO05D001261 9.9e-13 77.8 172 30.8
Gorai.001G141900 Gossypium raimondii HOM05D001445 ORTHO05D001261 1.7e-12 77.0 172 30.8
A06p45680 Brassica napus HOM05D001445 ORTHO05D001261 2.9e-12 76.3 175 33.1
BraA06t27437Z Brassica rapa HOM05D001445 ORTHO05D001261 2.9e-12 76.3 175 33.1
Duzib084G0977 Durio zibethinus HOM05D001445 ORTHO05D001261 2.9e-12 76.3 148 32.4
Gorai.001G141700 Gossypium raimondii HOM05D001445 ORTHO05D001261 4.9e-12 75.5 172 30.2
BolC7t43597H Brassica oleracea HOM05D008727 ORTHO05D040202 6.4e-12 75.1 59 62.7
CANSAT21G0328 Cannabis sativa HOM05D001445 ORTHO05D001261 1.4e-11 73.9 146 32.2
Gohir.A07G126700 Gossypium hirsutum HOM05D001445 ORTHO05D001261 1.9e-11 73.6 172 29.1
C07p30580 Brassica napus HOM05D008727 ORTHO05D040202 2.4e-11 73.2 54 64.8
COL.COLO4_17126 Corchorus olitorius HOM05D001445 ORTHO05D001261 3.2e-11 72.8 157 30.6
Sed0025391 Sechium edule HOM05D001445 ORTHO05D001261 4.1e-11 72.4 166 29.5
Duzib205G0415 Durio zibethinus HOM05D001445 ORTHO05D001261 5.4e-11 72.0 164 32.3
BcaC01g02648 Brassica carinata HOM05D001445 ORTHO05D001261 7.1e-11 71.6 169 34.3
Ciclev10033644m.g Citrus clementina HOM05D001445 ORTHO05D001261 7.1e-11 71.6 164 29.9
BcaC03g16906 Brassica carinata HOM05D001445 ORTHO05D001261 9.2e-11 71.2 170 32.9
AL8G11320 Arabidopsis lyrata HOM05D001445 ORTHO05D001261 1.2e-10 70.9 177 28.2
BraA02t08078Z Brassica rapa HOM05D001445 ORTHO05D001261 2.7e-10 69.7 172 31.4
Gohir.D12G119500 Gossypium hirsutum HOM05D001445 ORTHO05D001261 2.7e-10 69.7 179 27.4
Sp2g11730 Schrenkiella parvula HOM05D001445 ORTHO05D001261 2.7e-10 69.7 173 30.6
AT5G46950 Arabidopsis thaliana HOM05D001445 ORTHO05D001261 3.5e-10 69.3 176 31.2
Gohir.D07G130850 Gossypium hirsutum HOM05D001445 ORTHO05D001261 3.5e-10 69.3 132 31.1
Thecc.01G402600 Theobroma cacao HOM05D001445 ORTHO05D001261 3.5e-10 69.3 166 29.5
Gorai.008G130000 Gossypium raimondii HOM05D001445 ORTHO05D001261 1.0e-09 67.8 179 26.8
Psat4g219240 Pisum sativum HOM05D001445 ORTHO05D001261 3.9e-09 65.9 154 29.9
TAR375G1152 Trochodendron aralioides HOM05D001445 ORTHO05D001261 3.9e-09 65.9 143 32.2
Gorai.001G141600 Gossypium raimondii HOM05D001445 ORTHO05D001261 5.1e-09 65.5 175 25.7
BcaB08g36203 Brassica carinata HOM05D001445 ORTHO05D001261 6.6e-09 65.1 177 31.6
Gohir.D07G130800 Gossypium hirsutum HOM05D001445 ORTHO05D001261 6.6e-09 65.1 175 25.1
Duzib133G0634 Durio zibethinus HOM05D001445 ORTHO05D001261 1.9e-08 63.5 145 29.7
TAR073G0001 Trochodendron aralioides HOM05D001445 ORTHO05D001261 4.3e-08 62.4 153 30.7
TAR375G0630 Trochodendron aralioides HOM05D001445 ORTHO05D001261 5.6e-08 62.0 118 32.2
Gohir.A08G140800 Gossypium hirsutum HOM05D001445 ORTHO05D001261 1.2e-07 60.8 155 27.7
Phvul.010G041500 Phaseolus vulgaris HOM05D001445 ORTHO05D001261 1.2e-07 60.8 163 26.4
Gohir.A07G126650 Gossypium hirsutum HOM05D001445 ORTHO05D001261 2.1e-07 60.1 175 25.1
Medtr8g009300 Medicago truncatula HOM05D001445 ORTHO05D001261 2.8e-07 59.7 178 27.0
CSS0045791 Camellia sinensis var. sinensis HOM05D001445 ORTHO05D001261 3.6e-07 59.3 164 27.4
CARHR174490 Cardamine hirsuta HOM05D001445 ORTHO05D001261 6.2e-07 58.5 175 26.9
TWI81G0308 Tripterygium wilfordii HOM05D001445 ORTHO05D001261 8.1e-07 58.2 159 28.3
BolC9t55775H Brassica oleracea HOM05D001445 ORTHO05D001261 1.4e-06 57.4 109 34.9
PSO782G5274 Papaver somniferum HOM05D001445 ORTHO05D001261 2.4e-06 56.6 166 25.9
Ciclev10032808m.g Citrus clementina HOM05D001445 ORTHO05D001261 3.1e-06 56.2 137 30.7
Nn1g00653 Nelumbo nucifera HOM05D001445 ORTHO05D001261 5.2e-06 55.5 148 27.0
PSO478G2336 Papaver somniferum HOM05D001445 ORTHO05D001261 5.2e-06 55.5 119 30.3
Nn1g00663 Nelumbo nucifera HOM05D001445 ORTHO05D001261 6.8e-06 55.1 127 29.9


User provided reference genes

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