Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g31372 Brassica carinata HOM05D005100 ORTHO05D005607 4.2e-68 261.2 126 100.0
A06p44960 Brassica napus HOM05D005100 ORTHO05D005607 9.4e-68 260.0 126 99.2
BolC7t43663H Brassica oleracea HOM05D005100 ORTHO05D005607 9.4e-68 260.0 126 99.2
BcaC06g34239 Brassica carinata HOM05D000285 ORTHO05D005607 1.2e-67 259.6 126 98.4
BraA06t27367Z Brassica rapa HOM05D005100 ORTHO05D005607 1.6e-67 259.2 126 98.4
BcaB07g30770 Brassica carinata HOM05D005100 ORTHO05D005607 2.1e-67 258.8 126 99.2
C07p31220 Brassica napus HOM05D000285 ORTHO05D005607 3.6e-67 258.1 126 98.4
BcaC04g21614 Brassica carinata HOM05D005100 ORTHO05D005607 4.7e-67 257.7 126 98.4
A09p23130 Brassica napus HOM05D000285 ORTHO05D005607 4.7e-67 257.7 126 98.4
Thhalv10001074m.g Eutrema salsugineum HOM05D005100 ORTHO05D005607 1.8e-66 255.8 126 97.6
Sp2g12300 Schrenkiella parvula HOM05D005100 ORTHO05D005607 2.3e-66 255.4 126 96.8
A02p31440 Brassica napus HOM05D000285 ORTHO05D005607 3.4e-65 251.5 126 96.0
BraA02t08146Z Brassica rapa HOM05D005100 ORTHO05D005607 3.4e-65 251.5 126 96.0
BcaC03g16973 Brassica carinata HOM05D005100 ORTHO05D005607 4.4e-65 251.1 126 96.0
BcaC06g31367 Brassica carinata HOM05D005100 ORTHO05D005607 4.4e-65 251.1 127 96.9
C02p48770 Brassica napus HOM05D000285 ORTHO05D005607 4.4e-65 251.1 126 96.0
BolC2t10971H Brassica oleracea HOM05D005100 ORTHO05D005607 4.4e-65 251.1 126 96.0
CARHR173780 Cardamine hirsuta HOM05D005100 ORTHO05D005607 2.2e-64 248.8 126 95.2
Carub.0008s0021 Capsella rubella HOM05D005100 ORTHO05D005607 1.8e-63 245.7 126 94.4
Aa31LG9G5470 Aethionema arabicum HOM05D005100 ORTHO05D005607 2.4e-63 245.4 126 93.7
AL8G10400 Arabidopsis lyrata HOM05D005100 ORTHO05D005607 3.1e-63 245.0 126 94.4
AT5G47570 Arabidopsis thaliana HOM05D005100 ORTHO05D005607 9.1e-63 243.4 126 93.7
THA.LOC104806732 Tarenaya hassleriana HOM05D005100 ORTHO05D005607 4.5e-62 241.1 126 89.7
TAR374G1281 Trochodendron aralioides HOM05D005100 ORTHO05D005607 1.0e-61 240.0 126 90.5
Eucgr.E00445 Eucalyptus grandis HOM05D005100 ORTHO05D005607 5.0e-61 237.7 126 90.5
Cpa.g.sc276.5 Carica papaya HOM05D005100 ORTHO05D005607 6.6e-61 237.3 126 90.5
Lsat_1_v5_gn_6_2981 Lactuca sativa HOM05D005100 ORTHO05D005607 8.6e-61 236.9 126 88.1
MSTRG.12083 Avicennia marina HOM05D005100 ORTHO05D005607 1.1e-60 236.5 126 88.9
Nn1g01053 Nelumbo nucifera HOM05D005100 ORTHO05D005607 1.6e-59 232.6 126 85.7
SGA_v2.0_scaffold146G36159 Striga asiatica HOM05D005100 ORTHO05D005607 1.6e-59 232.6 126 88.1
HanXRQChr13g0396371 Helianthus annuus HOM05D005100 ORTHO05D005607 2.1e-59 232.3 126 84.9
Ciclev10022867m.g Citrus clementina HOM05D005100 ORTHO05D005607 4.7e-59 231.1 126 88.1
Manes.01G079000 Manihot esculenta HOM05D005100 ORTHO05D005607 4.7e-59 231.1 126 86.5
Potri.001G122200 Populus trichocarpa HOM05D005100 ORTHO05D005607 4.7e-59 231.1 126 86.5
unitig_736.g22564 Utricularia gibba HOM05D005100 ORTHO05D005607 4.7e-59 231.1 126 84.9
Manes.02G037900 Manihot esculenta HOM05D005100 ORTHO05D005607 6.1e-59 230.7 126 85.7
Nn6g34007 Nelumbo nucifera HOM05D005100 ORTHO05D005607 8.0e-59 230.3 126 85.7
Thecc.03G254700 Theobroma cacao HOM05D005100 ORTHO05D005607 8.0e-59 230.3 126 85.7
PGR042G3212 Punica granatum HOM05D005100 ORTHO05D005607 1.0e-58 229.9 126 86.5
SalBow4G2670 Salvia bowleyana HOM05D005100 ORTHO05D005607 1.0e-58 229.9 126 86.5
Gorai.008G237800 Gossypium raimondii HOM05D005100 ORTHO05D005607 1.8e-58 229.2 126 84.9
Prupe.3G111600 Prunus persica HOM05D005100 ORTHO05D005607 3.0e-58 228.4 126 85.7
Rhsim07G0106400 Rhododendron simsii HOM05D005100 ORTHO05D005607 3.0e-58 228.4 126 86.5
Cfa012751 Carpinus fangiana HOM05D005100 ORTHO05D005607 4.0e-58 228.0 126 87.3
Haze_07879 Corylus avellana HOM05D005100 ORTHO05D005607 4.0e-58 228.0 126 87.3
Gohir.D12G221900 Gossypium hirsutum HOM05D005100 ORTHO05D005607 4.0e-58 228.0 126 84.9
QL12p012809 Quercus lobata HOM05D005100 ORTHO05D005607 5.2e-58 227.6 125 87.2
Rhsim07G0107000 Rhododendron simsii HOM05D005100 ORTHO05D005607 5.2e-58 227.6 125 85.6
Solyc08g078860.4 Solanum lycopersicum HOM05D005100 ORTHO05D005607 5.2e-58 227.6 126 86.5
Sopen08g027330 Solanum pennellii HOM05D005100 ORTHO05D005607 5.2e-58 227.6 126 86.5
CSS0026368 Camellia sinensis var. sinensis HOM05D005100 ORTHO05D005607 8.9e-58 226.9 126 87.3
TWI60G0435 Tripterygium wilfordii HOM05D005100 ORTHO05D005607 8.9e-58 226.9 127 86.6
CAN.G1218.6 Capsicum annuum HOM05D005100 ORTHO05D005607 1.2e-57 226.5 126 84.9
Gohir.A12G219800 Gossypium hirsutum HOM05D005100 ORTHO05D005607 1.2e-57 226.5 124 85.5
TWI15G0944 Tripterygium wilfordii HOM05D005100 ORTHO05D005607 1.2e-57 226.5 127 85.8
CiPaw.11G152200 Carya illinoinensis HOM05D005100 ORTHO05D005607 1.5e-57 226.1 125 84.0
Glyma.05G058000 Glycine max HOM05D005100 ORTHO05D005607 1.5e-57 226.1 126 84.1
Lalb_Chr05g0225721 Lupinus albus HOM05D005100 ORTHO05D005607 1.5e-57 226.1 126 84.1
Hund14589 Selenicereus undatus HOM05D005100 ORTHO05D005607 1.5e-57 226.1 125 84.0
Duzib084G0333 Durio zibethinus HOM05D005100 ORTHO05D005607 2.0e-57 225.7 126 84.9
Gohir.D08G190100 Gossypium hirsutum HOM05D005100 ORTHO05D005607 2.6e-57 225.3 126 84.9
MD17G1263200 Malus domestica HOM05D005100 ORTHO05D005607 2.6e-57 225.3 126 85.7
Sed0015074 Sechium edule HOM05D005100 ORTHO05D005607 2.6e-57 225.3 125 83.2
Lalb_Chr09g0334171 Lupinus albus HOM05D005100 ORTHO05D005607 4.4e-57 224.6 126 84.1
arahy.Tifrunner.gnm1.ann1.1R27RR Arachis hypogaea HOM05D005100 ORTHO05D005607 5.7e-57 224.2 126 83.3
Migut.A00959 Erythranthe guttata HOM05D005100 ORTHO05D005607 5.7e-57 224.2 126 84.9
Nitab4.5_0007493g0020 Nicotiana tabacum HOM05D005100 ORTHO05D005607 5.7e-57 224.2 126 85.7
Duzib205G1156 Durio zibethinus HOM05D005100 ORTHO05D005607 9.8e-57 223.4 124 84.7
Glyma.17G140500 Glycine max HOM05D005100 ORTHO05D005607 1.3e-56 223.0 126 83.3
Peaxi162Scf00002g01216 Petunia axillaris HOM05D005100 ORTHO05D005607 1.3e-56 223.0 126 84.9
Cc08_g12730 Coffea canephora HOM05D005100 ORTHO05D005607 1.7e-56 222.6 126 83.3
Hma1.2p1_1414F.1_g281930 Hydrangea macrophylla HOM05D005100 ORTHO05D005607 1.7e-56 222.6 127 86.6
Phvul.003G219300 Phaseolus vulgaris HOM05D005100 ORTHO05D005607 2.2e-56 222.2 126 82.5
Aqoxy7G00738 Aquilegia oxysepala HOM05D005100 ORTHO05D005607 2.9e-56 221.9 126 81.0
ECA233G3117 Erigeron canadensis HOM05D005100 ORTHO05D005607 2.9e-56 221.9 114 87.7
Gohir.A08G171800 Gossypium hirsutum HOM05D005100 ORTHO05D005607 2.9e-56 221.9 126 84.1
MELO3C013951.2 Cucumis melo HOM05D005100 ORTHO05D005607 3.7e-56 221.5 125 81.6
CsaV3_3G002850 Cucumis sativus L. HOM05D005100 ORTHO05D005607 3.7e-56 221.5 125 81.6
Nitab4.5_0000312g0250 Nicotiana tabacum HOM05D005100 ORTHO05D005607 3.7e-56 221.5 126 84.9
Phvul.001G061600 Phaseolus vulgaris HOM05D005100 ORTHO05D005607 4.9e-56 221.1 126 82.5
Ca_21953_v3 Cicer arietinum L. HOM05D005100 ORTHO05D005607 6.4e-56 220.7 126 82.5
PSO017G3938 Papaver somniferum HOM05D005100 ORTHO05D005607 8.3e-56 220.3 126 82.5
PSO478G0216 Papaver somniferum HOM05D005100 ORTHO05D005607 1.4e-55 219.5 126 82.5
Gorai.004G200300 Gossypium raimondii HOM05D005100 ORTHO05D005607 1.8e-55 219.2 127 83.5
CANSAT21G2488 Cannabis sativa HOM05D005100 ORTHO05D005607 2.4e-55 218.8 126 81.7
Atru.chr9.1362 Acer truncatum HOM05D005100 ORTHO05D005607 3.2e-55 218.4 126 83.3
arahy.Tifrunner.gnm1.ann1.CZL3S8 Arachis hypogaea HOM05D005100 ORTHO05D005607 3.2e-55 218.4 124 81.5
ClCG10G002830 Citrullus lanatus HOM05D005100 ORTHO05D005607 3.2e-55 218.4 140 75.7
RcHm_v2.0_Chr2g0131201 Rosa chinensis HOM05D005100 ORTHO05D005607 4.1e-55 218.0 126 83.3
FvH4_6g27850 Fragaria vesca HOM05D005100 ORTHO05D005607 7.0e-55 217.2 126 83.3
FAN02G0882 Fragaria x ananassa HOM05D005100 ORTHO05D005607 7.0e-55 217.2 126 83.3
TPR.G37704 Trifolium pratense HOM05D003577 ORTHO05D005607 1.2e-54 216.5 126 81.7
BolC9t55849H Brassica oleracea HOM05D000285 ORTHO05D005607 2.0e-54 215.7 112 93.8
FAN05G1737 Fragaria x ananassa HOM05D005100 ORTHO05D005607 2.7e-54 215.3 125 82.4
Psat4g070000 Pisum sativum HOM05D005100 ORTHO05D005607 3.5e-54 214.9 126 81.0
FAN14G3965 Fragaria x ananassa HOM05D005100 ORTHO05D005607 4.6e-54 214.5 125 82.4
BraA09t37916Z Brassica rapa HOM05D000285 ORTHO05D005607 5.9e-54 214.2 107 97.2
Medtr4g101140 Medicago truncatula HOM05D005100 ORTHO05D005607 7.8e-54 213.8 126 81.0
ATR0105G007 Amborella trichopoda HOM05D005100 ORTHO05D005607 1.0e-53 213.4 126 77.8
MD09G1234000 Malus domestica HOM05D005100 ORTHO05D005607 1.0e-53 213.4 126 79.4
Lj2C215G2 Lonicera japonica HOM05D005100 ORTHO05D005607 1.3e-53 213.0 126 82.5
CiPaw.12G108400 Carya illinoinensis HOM05D005100 ORTHO05D005607 1.7e-53 212.6 126 81.0
C09p29860 Brassica napus HOM05D000285 ORTHO05D005607 2.3e-53 212.2 112 92.0
THA.LOC104798464 Tarenaya hassleriana HOM05D005100 ORTHO05D005607 2.3e-53 212.2 112 89.3
CDE11G0582 Ceratophyllum demersum HOM05D005100 ORTHO05D005607 2.5e-52 208.8 126 80.2
Zm00001eb391700 Zea mays HOM05D005100 ORTHO05D005607 2.1e-51 205.7 126 76.2
Os10g0551600 Oryza sativa ssp. japonica HOM05D005100 ORTHO05D005607 3.6e-51 204.9 126 72.2
Actinidia02116 Actinidia chinensis HOM05D005100 ORTHO05D005607 2.3e-50 202.2 124 77.4
Lj4g0006403 Lotus japonicus HOM05D005100 ORTHO05D005607 2.3e-50 202.2 126 75.4
Oeu011653.1 Olea europaea HOM05D005100 ORTHO05D005607 7.5e-49 197.2 107 87.9
Oeu006279.1 Olea europaea HOM05D005100 ORTHO05D005607 1.7e-48 196.1 107 86.9
Sabra01G0094100 Salix brachista HOM05D005100 ORTHO05D005607 4.9e-48 194.5 107 86.9
Zm00001eb023020 Zea mays HOM05D005100 ORTHO05D005607 6.4e-48 194.1 126 69.8
Haze_07877 Corylus avellana HOM05D005100 ORTHO05D005607 1.1e-47 193.4 107 87.9
HPP92_012813 Vanilla planifolia HOM05D005100 ORTHO05D005607 1.1e-47 193.4 126 73.8
vmacro14093 Vaccinium macrocarpon HOM05D005100 ORTHO05D005607 1.9e-47 192.6 107 86.0
Dinv21616 Davidia involucrata HOM05D005100 ORTHO05D005607 2.7e-46 188.7 107 84.1
MBI11_g37068_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 2.7e-46 188.7 107 84.1
COL.COLO4_37195 Corchorus olitorius HOM05D005100 ORTHO05D005607 3.5e-46 188.3 107 83.2
PGSC0003DMG400004750 Solanum tuberosum HOM05D005100 ORTHO05D005607 4.6e-46 188.0 107 85.0
Actinidia05198 Actinidia chinensis HOM05D005100 ORTHO05D005607 6.0e-46 187.6 93 89.2
Dinv39123 Davidia involucrata HOM05D005100 ORTHO05D005607 7.8e-46 187.2 94 89.4
DCAR_027789 Daucus carota HOM05D005100 ORTHO05D005607 1.0e-45 186.8 107 82.2
MBI02_g00644_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 2.3e-45 185.7 107 82.2
Ah.12g056670 Amaranthus hybridus HOM05D005100 ORTHO05D005607 3.0e-45 185.3 94 88.3
AUR62007498 Chenopodium quinoa HOM05D005100 ORTHO05D005607 3.9e-45 184.9 104 84.6
Sed0017508 Sechium edule HOM05D005100 ORTHO05D005607 2.1e-43 179.1 107 77.6
PGSC0003DMG400004799 Solanum tuberosum HOM05D005100 ORTHO05D005607 2.0e-41 172.6 136 66.9
SEGI_05699 Sequoiadendron giganteum HOM05D005100 ORTHO05D005607 2.1e-38 162.5 122 62.3
COL.COLO4_37193 Corchorus olitorius HOM05D005100 ORTHO05D005607 6.6e-37 157.5 126 65.1
MBI02_g36452_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 2.5e-36 155.6 124 65.3
EL10Ac5g13047 Beta vulgaris HOM05D005100 ORTHO05D005607 3.6e-35 151.8 126 64.3
CDE02G1099 Ceratophyllum demersum HOM05D005100 ORTHO05D005607 4.0e-34 148.3 141 57.4
GSVIVG01001301001 Vitis vinifera HOM05D005100 ORTHO05D005607 3.4e-33 145.2 75 84.0
Pp3c20_8820 Physcomitrium patens HOM05D005100 ORTHO05D005607 2.9e-32 142.1 101 62.4
Mapoly0086s0019 Marchantia polymorpha HOM05D005100 ORTHO05D005607 1.3e-29 133.3 115 56.5
Sc22g0000770 Simmondsia chinensis HOM05D005100 ORTHO05D005607 2.3e-29 132.5 80 78.8
SalBow8G2639 Salvia bowleyana HOM05D005100 ORTHO05D005607 6.6e-29 131.0 75 85.3
Hund11615 Selenicereus undatus HOM05D005100 ORTHO05D005607 6.2e-27 124.4 126 54.0
RcHm_v2.0_Chr1g0345201 Rosa chinensis HOM05D005100 ORTHO05D005607 4.0e-26 121.7 79 69.6
FAN05G0157 Fragaria x ananassa HOM05D005100 ORTHO05D005607 7.6e-25 117.5 86 68.6
AagrBONN_evm.TU.Sc2ySwM_117.677 Anthoceros agrestis HOM05D005100 ORTHO05D005607 6.4e-24 114.4 91 54.9
FAN09G2413 Fragaria x ananassa HOM05D005100 ORTHO05D005607 1.4e-23 113.2 86 65.1
FvH4_6g09560 Fragaria vesca HOM05D005100 ORTHO05D005607 9.3e-23 110.5 88 67.0
RcHm_v2.0_Chr2g0109601 Rosa chinensis HOM05D005100 ORTHO05D005607 9.3e-23 110.5 66 75.8
RcHm_v2.0_Chr2g0112371 Rosa chinensis HOM05D005100 ORTHO05D005607 2.7e-22 109.0 65 75.4
TWI81G0033 Tripterygium wilfordii HOM05D000001 ORTHO05D011365 3.5e-22 108.6 63 81.0
RcHm_v2.0_Chr6g0244011 Rosa chinensis HOM05D005100 ORTHO05D005607 7.8e-22 107.5 75 68.0
RcHm_v2.0_Chr1g0326801 Rosa chinensis HOM05D005100 ORTHO05D005607 4.0e-18 95.1 97 52.6
CBR_g50946 Chara braunii HOM05D005100 ORTHO05D005607 5.8e-17 91.3 78 52.6
RcHm_v2.0_Chr4g0420451 Rosa chinensis HOM05D005100 ORTHO05D005607 5.8e-17 91.3 75 65.3
RcHm_v2.0_Chr5g0051271 Rosa chinensis HOM05D005100 ORTHO05D005607 5.8e-17 91.3 72 65.3
MCO13G524 Micromonas commoda HOM05D005100 ORTHO05D005607 2.9e-16 89.0 94 47.9
Nitab4.5_0003531g0010 Nicotiana tabacum HOM05D005100 ORTHO05D005607 3.5e-14 82.0 43 86.0
MSTRG.12084 Avicennia marina HOM05D005349 ORTHO05D006901 5.8e-09 64.7 45 73.3
QL12p012843 Quercus lobata HOM05D005100 ORTHO05D005607 1.4e-07 60.1 42 76.2
SMO119G0354 Selaginella moellendorffii HOM05D005100 ORTHO05D005607 2.7e-06 55.8 95 35.8


User provided reference genes

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