Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g31367 Brassica carinata HOM05D005100 ORTHO05D005607 3.3e-68 261.5 127 100.0
A06p44960 Brassica napus HOM05D005100 ORTHO05D005607 3.4e-65 251.5 127 97.6
BolC7t43663H Brassica oleracea HOM05D005100 ORTHO05D005607 3.4e-65 251.5 127 97.6
BcaC06g34239 Brassica carinata HOM05D000285 ORTHO05D005607 4.4e-65 251.1 127 96.9
BcaC06g31372 Brassica carinata HOM05D005100 ORTHO05D005607 5.8e-65 250.8 127 96.9
BraA06t27367Z Brassica rapa HOM05D005100 ORTHO05D005607 5.8e-65 250.8 127 96.9
C07p31220 Brassica napus HOM05D000285 ORTHO05D005607 1.3e-64 249.6 127 96.9
BcaC04g21614 Brassica carinata HOM05D005100 ORTHO05D005607 1.7e-64 249.2 127 96.9
A09p23130 Brassica napus HOM05D000285 ORTHO05D005607 1.7e-64 249.2 127 96.9
BcaB07g30770 Brassica carinata HOM05D005100 ORTHO05D005607 2.9e-64 248.4 127 96.1
Thhalv10001074m.g Eutrema salsugineum HOM05D005100 ORTHO05D005607 6.4e-64 247.3 127 96.1
Sp2g12300 Schrenkiella parvula HOM05D005100 ORTHO05D005607 8.3e-64 246.9 127 95.3
A02p31440 Brassica napus HOM05D000285 ORTHO05D005607 4.6e-62 241.1 127 92.9
BraA02t08146Z Brassica rapa HOM05D005100 ORTHO05D005607 4.6e-62 241.1 127 92.9
BcaC03g16973 Brassica carinata HOM05D005100 ORTHO05D005607 6.0e-62 240.7 127 92.9
C02p48770 Brassica napus HOM05D000285 ORTHO05D005607 6.0e-62 240.7 127 92.9
BolC2t10971H Brassica oleracea HOM05D005100 ORTHO05D005607 6.0e-62 240.7 127 92.9
CARHR173780 Cardamine hirsuta HOM05D005100 ORTHO05D005607 7.8e-62 240.4 127 93.7
Carub.0008s0021 Capsella rubella HOM05D005100 ORTHO05D005607 6.6e-61 237.3 127 92.9
Aa31LG9G5470 Aethionema arabicum HOM05D005100 ORTHO05D005607 8.6e-61 236.9 127 92.1
AL8G10400 Arabidopsis lyrata HOM05D005100 ORTHO05D005607 1.1e-60 236.5 127 92.9
AT5G47570 Arabidopsis thaliana HOM05D005100 ORTHO05D005607 3.3e-60 235.0 127 92.1
THA.LOC104806732 Tarenaya hassleriana HOM05D005100 ORTHO05D005607 1.6e-59 232.6 127 88.2
TAR374G1281 Trochodendron aralioides HOM05D005100 ORTHO05D005607 3.6e-59 231.5 127 89.0
Eucgr.E00445 Eucalyptus grandis HOM05D005100 ORTHO05D005607 1.8e-58 229.2 127 89.0
Cpa.g.sc276.5 Carica papaya HOM05D005100 ORTHO05D005607 2.4e-58 228.8 127 89.0
Lsat_1_v5_gn_6_2981 Lactuca sativa HOM05D005100 ORTHO05D005607 3.1e-58 228.4 127 86.6
MSTRG.12083 Avicennia marina HOM05D005100 ORTHO05D005607 4.0e-58 228.0 127 87.4
Nn1g01053 Nelumbo nucifera HOM05D005100 ORTHO05D005607 5.8e-57 224.2 127 84.3
HanXRQChr13g0396371 Helianthus annuus HOM05D005100 ORTHO05D005607 7.6e-57 223.8 127 83.5
SGA_v2.0_scaffold146G36159 Striga asiatica HOM05D005100 ORTHO05D005607 9.9e-57 223.4 127 85.8
Manes.01G079000 Manihot esculenta HOM05D005100 ORTHO05D005607 1.7e-56 222.6 127 85.0
Potri.001G122200 Populus trichocarpa HOM05D005100 ORTHO05D005607 1.7e-56 222.6 127 85.0
unitig_736.g22564 Utricularia gibba HOM05D005100 ORTHO05D005607 1.7e-56 222.6 127 83.5
Manes.02G037900 Manihot esculenta HOM05D005100 ORTHO05D005607 2.2e-56 222.2 127 84.3
Ciclev10022867m.g Citrus clementina HOM05D005100 ORTHO05D005607 2.9e-56 221.9 127 85.8
Nn6g34007 Nelumbo nucifera HOM05D005100 ORTHO05D005607 2.9e-56 221.9 127 84.3
Thecc.03G254700 Theobroma cacao HOM05D005100 ORTHO05D005607 2.9e-56 221.9 127 84.3
PGR042G3212 Punica granatum HOM05D005100 ORTHO05D005607 3.8e-56 221.5 127 85.0
SalBow4G2670 Salvia bowleyana HOM05D005100 ORTHO05D005607 3.8e-56 221.5 127 85.0
Gorai.008G237800 Gossypium raimondii HOM05D005100 ORTHO05D005607 1.1e-55 219.9 127 82.7
Prupe.3G111600 Prunus persica HOM05D005100 ORTHO05D005607 1.1e-55 219.9 127 84.3
Rhsim07G0106400 Rhododendron simsii HOM05D005100 ORTHO05D005607 1.1e-55 219.9 127 85.0
Cfa012751 Carpinus fangiana HOM05D005100 ORTHO05D005607 1.4e-55 219.5 127 85.8
Haze_07879 Corylus avellana HOM05D005100 ORTHO05D005607 1.4e-55 219.5 127 85.8
QL12p012809 Quercus lobata HOM05D005100 ORTHO05D005607 1.9e-55 219.2 126 85.7
Rhsim07G0107000 Rhododendron simsii HOM05D005100 ORTHO05D005607 1.9e-55 219.2 126 84.1
Solyc08g078860.4 Solanum lycopersicum HOM05D005100 ORTHO05D005607 1.9e-55 219.2 127 85.0
Sopen08g027330 Solanum pennellii HOM05D005100 ORTHO05D005607 1.9e-55 219.2 127 85.0
Gohir.D12G221900 Gossypium hirsutum HOM05D005100 ORTHO05D005607 2.4e-55 218.8 127 82.7
CSS0026368 Camellia sinensis var. sinensis HOM05D005100 ORTHO05D005607 3.2e-55 218.4 127 85.8
TWI60G0435 Tripterygium wilfordii HOM05D005100 ORTHO05D005607 3.2e-55 218.4 128 85.2
CAN.G1218.6 Capsicum annuum HOM05D005100 ORTHO05D005607 4.1e-55 218.0 127 83.5
TWI15G0944 Tripterygium wilfordii HOM05D005100 ORTHO05D005607 4.1e-55 218.0 128 84.4
CiPaw.11G152200 Carya illinoinensis HOM05D005100 ORTHO05D005607 5.4e-55 217.6 126 82.5
Glyma.05G058000 Glycine max HOM05D005100 ORTHO05D005607 5.4e-55 217.6 127 82.7
Gohir.A12G219800 Gossypium hirsutum HOM05D005100 ORTHO05D005607 5.4e-55 217.6 125 83.2
Lalb_Chr05g0225721 Lupinus albus HOM05D005100 ORTHO05D005607 5.4e-55 217.6 127 82.7
Hund14589 Selenicereus undatus HOM05D005100 ORTHO05D005607 5.4e-55 217.6 126 82.5
Duzib084G0333 Durio zibethinus HOM05D005100 ORTHO05D005607 7.1e-55 217.2 127 83.5
MD17G1263200 Malus domestica HOM05D005100 ORTHO05D005607 9.2e-55 216.9 127 84.3
Sed0015074 Sechium edule HOM05D005100 ORTHO05D005607 9.2e-55 216.9 126 81.7
Gohir.D08G190100 Gossypium hirsutum HOM05D005100 ORTHO05D005607 1.6e-54 216.1 127 82.7
Lalb_Chr09g0334171 Lupinus albus HOM05D005100 ORTHO05D005607 1.6e-54 216.1 127 82.7
arahy.Tifrunner.gnm1.ann1.1R27RR Arachis hypogaea HOM05D005100 ORTHO05D005607 2.1e-54 215.7 127 81.9
Migut.A00959 Erythranthe guttata HOM05D005100 ORTHO05D005607 2.1e-54 215.7 127 83.5
Nitab4.5_0007493g0020 Nicotiana tabacum HOM05D005100 ORTHO05D005607 2.1e-54 215.7 127 84.3
Duzib205G1156 Durio zibethinus HOM05D005100 ORTHO05D005607 2.7e-54 215.3 125 83.2
Glyma.17G140500 Glycine max HOM05D005100 ORTHO05D005607 4.6e-54 214.5 127 81.9
Peaxi162Scf00002g01216 Petunia axillaris HOM05D005100 ORTHO05D005607 4.6e-54 214.5 127 83.5
Cc08_g12730 Coffea canephora HOM05D005100 ORTHO05D005607 6.0e-54 214.2 127 81.9
Hma1.2p1_1414F.1_g281930 Hydrangea macrophylla HOM05D005100 ORTHO05D005607 6.0e-54 214.2 128 85.2
Phvul.003G219300 Phaseolus vulgaris HOM05D005100 ORTHO05D005607 7.8e-54 213.8 127 81.1
ECA233G3117 Erigeron canadensis HOM05D005100 ORTHO05D005607 1.0e-53 213.4 115 86.1
Nitab4.5_0000312g0250 Nicotiana tabacum HOM05D005100 ORTHO05D005607 1.3e-53 213.0 127 83.5
Aqoxy7G00738 Aquilegia oxysepala HOM05D005100 ORTHO05D005607 1.7e-53 212.6 127 78.7
Gohir.A08G171800 Gossypium hirsutum HOM05D005100 ORTHO05D005607 1.7e-53 212.6 127 81.9
Phvul.001G061600 Phaseolus vulgaris HOM05D005100 ORTHO05D005607 1.7e-53 212.6 127 81.1
Ca_21953_v3 Cicer arietinum L. HOM05D005100 ORTHO05D005607 2.3e-53 212.2 127 81.1
MELO3C013951.2 Cucumis melo HOM05D005100 ORTHO05D005607 2.3e-53 212.2 126 79.4
CsaV3_3G002850 Cucumis sativus L. HOM05D005100 ORTHO05D005607 2.3e-53 212.2 126 79.4
PSO017G3938 Papaver somniferum HOM05D005100 ORTHO05D005607 3.0e-53 211.8 127 81.1
PSO478G0216 Papaver somniferum HOM05D005100 ORTHO05D005607 5.1e-53 211.1 127 81.1
arahy.Tifrunner.gnm1.ann1.CZL3S8 Arachis hypogaea HOM05D005100 ORTHO05D005607 8.7e-53 210.3 125 80.0
CANSAT21G2488 Cannabis sativa HOM05D005100 ORTHO05D005607 8.7e-53 210.3 127 80.3
Atru.chr9.1362 Acer truncatum HOM05D005100 ORTHO05D005607 1.1e-52 209.9 127 81.9
Gorai.004G200300 Gossypium raimondii HOM05D005100 ORTHO05D005607 1.1e-52 209.9 128 81.2
RcHm_v2.0_Chr2g0131201 Rosa chinensis HOM05D005100 ORTHO05D005607 1.5e-52 209.5 127 81.9
ClCG10G002830 Citrullus lanatus HOM05D005100 ORTHO05D005607 1.9e-52 209.1 141 73.8
FvH4_6g27850 Fragaria vesca HOM05D005100 ORTHO05D005607 2.5e-52 208.8 127 81.9
FAN02G0882 Fragaria x ananassa HOM05D005100 ORTHO05D005607 2.5e-52 208.8 127 81.9
TPR.G37704 Trifolium pratense HOM05D003577 ORTHO05D005607 4.3e-52 208.0 127 80.3
BolC9t55849H Brassica oleracea HOM05D000285 ORTHO05D005607 5.6e-52 207.6 113 92.0
FAN05G1737 Fragaria x ananassa HOM05D005100 ORTHO05D005607 9.6e-52 206.8 126 81.0
Psat4g070000 Pisum sativum HOM05D005100 ORTHO05D005607 1.2e-51 206.5 127 79.5
ATR0105G007 Amborella trichopoda HOM05D005100 ORTHO05D005607 1.6e-51 206.1 127 77.2
BraA09t37916Z Brassica rapa HOM05D000285 ORTHO05D005607 1.6e-51 206.1 108 95.4
FAN14G3965 Fragaria x ananassa HOM05D005100 ORTHO05D005607 1.6e-51 206.1 126 81.0
Medtr4g101140 Medicago truncatula HOM05D005100 ORTHO05D005607 2.8e-51 205.3 127 79.5
MD09G1234000 Malus domestica HOM05D005100 ORTHO05D005607 3.6e-51 204.9 127 78.0
Lj2C215G2 Lonicera japonica HOM05D005100 ORTHO05D005607 4.7e-51 204.5 127 81.1
C09p29860 Brassica napus HOM05D000285 ORTHO05D005607 6.2e-51 204.1 113 90.3
CiPaw.12G108400 Carya illinoinensis HOM05D005100 ORTHO05D005607 6.2e-51 204.1 127 79.5
THA.LOC104798464 Tarenaya hassleriana HOM05D005100 ORTHO05D005607 6.2e-51 204.1 113 87.6
CDE11G0582 Ceratophyllum demersum HOM05D005100 ORTHO05D005607 9.0e-50 200.3 127 78.7
Os10g0551600 Oryza sativa ssp. japonica HOM05D005100 ORTHO05D005607 1.3e-48 196.4 127 70.9
Zm00001eb391700 Zea mays HOM05D005100 ORTHO05D005607 2.9e-48 195.3 127 73.2
Actinidia02116 Actinidia chinensis HOM05D005100 ORTHO05D005607 6.4e-48 194.1 125 76.0
Lj4g0006403 Lotus japonicus HOM05D005100 ORTHO05D005607 8.4e-48 193.7 127 74.0
Oeu011653.1 Olea europaea HOM05D005100 ORTHO05D005607 2.1e-46 189.1 108 86.1
Oeu006279.1 Olea europaea HOM05D005100 ORTHO05D005607 4.6e-46 188.0 108 85.2
Sabra01G0094100 Salix brachista HOM05D005100 ORTHO05D005607 1.3e-45 186.4 108 85.2
Haze_07877 Corylus avellana HOM05D005100 ORTHO05D005607 3.0e-45 185.3 108 86.1
HPP92_012813 Vanilla planifolia HOM05D005100 ORTHO05D005607 3.9e-45 184.9 127 72.4
Zm00001eb023020 Zea mays HOM05D005100 ORTHO05D005607 3.9e-45 184.9 127 67.7
vmacro14093 Vaccinium macrocarpon HOM05D005100 ORTHO05D005607 5.1e-45 184.5 108 84.3
Dinv21616 Davidia involucrata HOM05D005100 ORTHO05D005607 7.3e-44 180.6 108 82.4
MBI11_g37068_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 7.3e-44 180.6 108 82.4
COL.COLO4_37195 Corchorus olitorius HOM05D005100 ORTHO05D005607 9.6e-44 180.3 108 81.5
PGSC0003DMG400004750 Solanum tuberosum HOM05D005100 ORTHO05D005607 1.3e-43 179.9 108 83.3
Actinidia05198 Actinidia chinensis HOM05D005100 ORTHO05D005607 1.6e-43 179.5 94 87.2
Dinv39123 Davidia involucrata HOM05D005100 ORTHO05D005607 2.1e-43 179.1 95 87.4
DCAR_027789 Daucus carota HOM05D005100 ORTHO05D005607 2.8e-43 178.7 108 80.6
MBI02_g00644_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 6.2e-43 177.6 108 80.6
Ah.12g056670 Amaranthus hybridus HOM05D005100 ORTHO05D005607 8.1e-43 177.2 95 86.3
AUR62007498 Chenopodium quinoa HOM05D005100 ORTHO05D005607 1.4e-42 176.4 105 82.9
PGSC0003DMG400004799 Solanum tuberosum HOM05D005100 ORTHO05D005607 5.8e-41 171.0 136 66.9
Sed0017508 Sechium edule HOM05D005100 ORTHO05D005607 9.9e-41 170.2 108 75.0
SEGI_05699 Sequoiadendron giganteum HOM05D005100 ORTHO05D005607 7.4e-36 154.1 123 61.0
COL.COLO4_37193 Corchorus olitorius HOM05D005100 ORTHO05D005607 1.6e-35 152.9 127 63.0
MBI02_g36452_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 2.8e-35 152.1 124 65.3
EL10Ac5g13047 Beta vulgaris HOM05D005100 ORTHO05D005607 4.8e-35 151.4 127 64.6
CDE02G1099 Ceratophyllum demersum HOM05D005100 ORTHO05D005607 1.1e-31 140.2 142 56.3
GSVIVG01001301001 Vitis vinifera HOM05D005100 ORTHO05D005607 1.2e-30 136.7 76 81.6
Pp3c20_8820 Physcomitrium patens HOM05D005100 ORTHO05D005607 1.8e-29 132.9 102 59.8
SalBow8G2639 Salvia bowleyana HOM05D005100 ORTHO05D005607 9.6e-28 127.1 76 81.6
Sc22g0000770 Simmondsia chinensis HOM05D005100 ORTHO05D005607 2.8e-27 125.6 76 77.6
Mapoly0086s0019 Marchantia polymorpha HOM05D005100 ORTHO05D005607 6.2e-27 124.4 116 54.3
Hund11615 Selenicereus undatus HOM05D005100 ORTHO05D005607 1.5e-25 119.8 127 52.0
RcHm_v2.0_Chr1g0345201 Rosa chinensis HOM05D005100 ORTHO05D005607 1.1e-23 113.6 80 67.5
FAN05G0157 Fragaria x ananassa HOM05D005100 ORTHO05D005607 3.5e-22 108.6 87 65.5
AagrBONN_evm.TU.Sc2ySwM_117.677 Anthoceros agrestis HOM05D005100 ORTHO05D005607 1.8e-21 106.3 92 53.3
RcHm_v2.0_Chr2g0109601 Rosa chinensis HOM05D005100 ORTHO05D005607 3.9e-21 105.1 67 74.6
TWI81G0033 Tripterygium wilfordii HOM05D000001 ORTHO05D011365 5.1e-21 104.8 64 76.6
FAN09G2413 Fragaria x ananassa HOM05D005100 ORTHO05D005607 6.7e-21 104.4 87 62.1
RcHm_v2.0_Chr2g0112371 Rosa chinensis HOM05D005100 ORTHO05D005607 1.1e-20 103.6 66 74.2
RcHm_v2.0_Chr6g0244011 Rosa chinensis HOM05D005100 ORTHO05D005607 1.5e-20 103.2 75 65.3
FvH4_6g09560 Fragaria vesca HOM05D005100 ORTHO05D005607 4.3e-20 101.7 89 64.0
RcHm_v2.0_Chr5g0051271 Rosa chinensis HOM05D005100 ORTHO05D005607 5.9e-17 91.3 72 65.3
RcHm_v2.0_Chr1g0326801 Rosa chinensis HOM05D005100 ORTHO05D005607 2.2e-16 89.4 98 52.0
MCO13G524 Micromonas commoda HOM05D005100 ORTHO05D005607 6.5e-16 87.8 94 45.7
RcHm_v2.0_Chr4g0420451 Rosa chinensis HOM05D005100 ORTHO05D005607 1.1e-15 87.0 75 62.7
CBR_g50946 Chara braunii HOM05D005100 ORTHO05D005607 3.6e-14 82.0 79 49.4
Nitab4.5_0003531g0010 Nicotiana tabacum HOM05D005100 ORTHO05D005607 6.7e-13 77.8 43 81.4
MSTRG.12084 Avicennia marina HOM05D005349 ORTHO05D006901 5.9e-09 64.7 45 73.3
QL12p012843 Quercus lobata HOM05D005100 ORTHO05D005607 1.4e-07 60.1 42 76.2


User provided reference genes

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