Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g31353 Brassica carinata HOM05D010138 ORTHO05D006998 1.2e-22 109.0 58 100.0
C08p37600 Brassica napus HOM05D000736 ORTHO05D017680 4.6e-17 90.5 54 87.0
BolC1t02963H Brassica oleracea HOM05D000736 ORTHO05D017680 4.6e-17 90.5 54 87.0
BraA01t01586Z Brassica rapa HOM05D000736 ORTHO05D017680 6.0e-17 90.1 52 88.5
C01p30220 Brassica napus HOM05D000736 ORTHO05D017680 1.0e-16 89.4 54 85.2
A02p02510 Brassica napus HOM05D000736 ORTHO05D017680 1.7e-16 88.6 54 85.2
BcaC09g50000 Brassica carinata HOM05D034825 ORTHO05D032742 2.3e-16 88.2 52 86.5
BcaB05g21871 Brassica carinata HOM05D010138 ORTHO05D006998 1.2e-12 75.9 46 84.8
Thhalv10014656m.g Eutrema salsugineum HOM05D010138 ORTHO05D006998 2.2e-11 71.6 49 77.6
BcaC09g49216 Brassica carinata HOM05D010138 ORTHO05D006998 8.3e-11 69.7 52 76.9
C01p41300 Brassica napus HOM05D010138 ORTHO05D006998 8.3e-11 69.7 52 76.9
BolC1t04090H Brassica oleracea HOM05D010138 ORTHO05D006998 8.3e-11 69.7 52 76.9
Sp6g39810 Schrenkiella parvula HOM05D010138 ORTHO05D006998 1.9e-10 68.6 47 76.6
AT5G02770 Arabidopsis thaliana HOM05D010138 ORTHO05D006998 7.1e-10 66.6 54 66.7
AL6G12020 Arabidopsis lyrata HOM05D010138 ORTHO05D006998 9.2e-10 66.2 50 72.0
Carub.0006s0153 Capsella rubella HOM05D010138 ORTHO05D006998 9.2e-10 66.2 49 77.6
CARHR210610 Cardamine hirsuta HOM05D010138 ORTHO05D006998 9.2e-10 66.2 49 79.6
BolC7t43445H Brassica oleracea HOM05D001366 ORTHO05D008529 1.7e-08 62.0 43 79.1
A10p32940 Brassica napus HOM05D010138 ORTHO05D006998 3.0e-08 61.2 45 73.3
BraA10t45331Z Brassica rapa HOM05D010138 ORTHO05D006998 3.0e-08 61.2 45 73.3
CiPaw.10G138800 Carya illinoinensis HOM05D007476 ORTHO05D006998 1.9e-07 58.5 49 63.3
Haze_20680 Corylus avellana HOM05D007476 ORTHO05D006998 1.9e-07 58.5 47 66.0
BolC9t60125H Brassica oleracea HOM05D010138 ORTHO05D006998 2.5e-07 58.2 41 75.6
BraA02t04729Z Brassica rapa HOM05D010138 ORTHO05D006998 2.5e-07 58.2 39 82.1
Aa31LG1G22120 Aethionema arabicum HOM05D010138 ORTHO05D006998 3.3e-07 57.8 41 78.0
RcHm_v2.0_Chr3g0468131 Rosa chinensis HOM05D007476 ORTHO05D006998 4.3e-07 57.4 51 56.9
C07p29060 Brassica napus HOM05D001366 ORTHO05D008529 5.6e-07 57.0 39 79.5
Prupe.6G244900 Prunus persica HOM05D007476 ORTHO05D006998 5.6e-07 57.0 49 59.2
BcaNung03275 Brassica carinata HOM05D010138 ORTHO05D006998 7.3e-07 56.6 40 75.0
C09p73910 Brassica napus HOM05D010138 ORTHO05D006998 7.3e-07 56.6 40 75.0
Dinv35685 Davidia involucrata HOM05D007476 ORTHO05D006998 9.5e-07 56.2 46 65.2
THA.LOC104823246 Tarenaya hassleriana HOM05D010138 ORTHO05D006998 9.5e-07 56.2 47 61.7
Gohir.A04G077400 Gossypium hirsutum HOM05D007476 ORTHO05D006998 1.2e-06 55.8 42 69.0
Gohir.D04G116600 Gossypium hirsutum HOM05D007476 ORTHO05D006998 1.2e-06 55.8 42 69.0
Gorai.009G421500 Gossypium raimondii HOM05D007476 ORTHO05D006998 1.2e-06 55.8 42 69.0
Cfa017474 Carpinus fangiana HOM05D007476 ORTHO05D006998 2.1e-06 55.1 44 63.6
Gorai.006G177500 Gossypium raimondii HOM05D007476 ORTHO05D006998 2.1e-06 55.1 48 56.2
Actinidia05282 Actinidia chinensis HOM05D007476 ORTHO05D006998 2.8e-06 54.7 50 62.0
C02p00640 Brassica napus HOM05D010138 ORTHO05D006998 3.6e-06 54.3 37 81.1
Thecc.05G050900 Theobroma cacao HOM05D007476 ORTHO05D006998 3.6e-06 54.3 43 69.8
Duzib093G1301 Durio zibethinus HOM05D007476 ORTHO05D006998 4.7e-06 53.9 42 66.7
Dinv37238 Davidia involucrata HOM05D007476 ORTHO05D006998 6.2e-06 53.5 44 63.6


User provided reference genes

Program Settings