Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g31334 Brassica carinata HOM05D007140 ORTHO05D008539 1.5e-24 117.5 254 100.0
A06p44680 Brassica napus HOM05D007140 ORTHO05D008539 7.9e-13 78.6 75 90.7
BraA06t27341Z Brassica rapa HOM05D007140 ORTHO05D008539 7.9e-13 78.6 75 90.7
BcaC03g16993 Brassica carinata HOM05D007140 ORTHO05D008539 3.0e-12 76.6 75 88.0
BolC2t10986H Brassica oleracea HOM05D007140 ORTHO05D008539 3.0e-12 76.6 75 88.0
A02p31680 Brassica napus HOM05D007140 ORTHO05D008539 8.7e-12 75.1 75 82.7
Sp2g12570 Schrenkiella parvula HOM05D007140 ORTHO05D008539 2.5e-11 73.6 79 60.8
C07p31520 Brassica napus HOM05D007140 ORTHO05D008539 1.6e-10 70.9 38 100.0
BraA02t08174Z Brassica rapa HOM05D007140 ORTHO05D008539 4.8e-10 69.3 75 80.0
C02p49020 Brassica napus HOM05D007140 ORTHO05D008539 6.2e-10 68.9 38 97.4
BolC2t10996H Brassica oleracea HOM05D007140 ORTHO05D008539 6.2e-10 68.9 38 97.4
C02p49060 Brassica napus HOM05D007140 ORTHO05D008539 1.8e-09 67.4 38 94.7
Thhalv10001024m.g Eutrema salsugineum HOM05D007140 ORTHO05D008539 1.5e-08 64.3 37 91.9
Nn4g24045 Nelumbo nucifera HOM05D007140 ORTHO05D008539 2.6e-08 63.5 37 89.2
Hma1.2p1_0114F.1_g055420 Hydrangea macrophylla HOM05D007140 ORTHO05D008539 5.8e-08 62.4 37 86.5
HPP92_004883 Vanilla planifolia HOM05D007140 ORTHO05D008539 5.8e-08 62.4 36 86.1
Carub.0005s0008 Capsella rubella HOM05D007140 ORTHO05D008539 7.6e-08 62.0 37 86.5
COL.COLO4_06026 Corchorus olitorius HOM05D007140 ORTHO05D008539 7.6e-08 62.0 36 88.9
FvH4_4g26261 Fragaria vesca HOM05D007140 ORTHO05D008539 7.6e-08 62.0 36 88.9
FAN17G0786 Fragaria x ananassa HOM05D007140 ORTHO05D008539 7.6e-08 62.0 36 88.9
FAN22G0565 Fragaria x ananassa HOM05D007140 ORTHO05D008539 7.6e-08 62.0 36 88.9
MBI16_g21172_MAGBIO Magnolia biondii HOM05D007140 ORTHO05D008539 7.6e-08 62.0 36 88.9
THA.LOC104824159 Tarenaya hassleriana HOM05D007140 ORTHO05D008539 7.6e-08 62.0 37 86.5
Lj3P876T20 Lonicera japonica HOM05D007140 ORTHO05D008539 9.9e-08 61.6 36 86.1
Os01g0120700 Oryza sativa ssp. japonica HOM05D007140 ORTHO05D008539 9.9e-08 61.6 36 86.1
SEGI_30462 Sequoiadendron giganteum HOM05D007140 ORTHO05D008539 1.3e-07 61.2 37 83.8
Sc04g0005790 Simmondsia chinensis HOM05D007140 ORTHO05D008539 1.3e-07 61.2 36 86.1
CARHR143650 Cardamine hirsuta HOM05D007140 ORTHO05D008539 1.7e-07 60.8 71 83.1
FAN12G1559 Fragaria x ananassa HOM05D003680 ORTHO05D004264 1.7e-07 60.8 36 86.1
PSO017G0369 Papaver somniferum HOM05D007140 ORTHO05D008539 1.7e-07 60.8 37 81.1
RcHm_v2.0_Chr4g0433871 Rosa chinensis HOM05D007140 ORTHO05D008539 1.7e-07 60.8 36 86.1
TAR622G0373 Trochodendron aralioides HOM05D007140 ORTHO05D008539 1.7e-07 60.8 36 83.3
unitig_26.g10011 Utricularia gibba HOM05D007140 ORTHO05D008539 1.7e-07 60.8 37 83.8
AL5G10050 Arabidopsis lyrata HOM05D007140 ORTHO05D008539 2.2e-07 60.5 37 83.8
AT2G01100 Arabidopsis thaliana HOM05D007140 ORTHO05D008539 2.2e-07 60.5 37 83.8
FAN07G2347 Fragaria x ananassa HOM05D007140 ORTHO05D008539 2.2e-07 60.5 36 86.1
Sed0020048 Sechium edule HOM05D007140 ORTHO05D008539 2.2e-07 60.5 36 86.1
Actinidia31986 Actinidia chinensis HOM05D007140 ORTHO05D008539 2.9e-07 60.1 36 83.3
Aa31LG3G9770 Aethionema arabicum HOM05D000057 ORTHO05D001897 2.9e-07 60.1 38 84.2
MSTRG.877 Avicennia marina HOM05D007140 ORTHO05D008539 2.9e-07 60.1 37 81.1
CDE06G2249 Ceratophyllum demersum HOM05D007140 ORTHO05D008539 2.9e-07 60.1 36 83.3
CDE07G0564 Ceratophyllum demersum HOM05D007140 ORTHO05D008539 2.9e-07 60.1 36 83.3
Migut.L00827 Erythranthe guttata HOM05D045982 ORTHO05D008539 2.9e-07 60.1 36 83.3
Gohir.A05G317300 Gossypium hirsutum HOM05D007140 ORTHO05D008539 2.9e-07 60.1 37 83.8
PGR119G2007 Punica granatum HOM05D007140 ORTHO05D008539 2.9e-07 60.1 36 86.1
Rhsim09G0068700 Rhododendron simsii HOM05D067272 ORTHO05D008539 2.9e-07 60.1 36 83.3
Ca_23696_v3 Cicer arietinum L. HOM05D007140 ORTHO05D008539 3.8e-07 59.7 39 74.4
Cc11_g09160 Coffea canephora HOM05D007140 ORTHO05D008539 3.8e-07 59.7 37 78.4
Medtr1g108700 Medicago truncatula HOM05D007140 ORTHO05D008539 3.8e-07 59.7 36 80.6
TAR629G2134 Trochodendron aralioides HOM05D007140 ORTHO05D008539 3.8e-07 59.7 37 81.1
MELO3C012294.2 Cucumis melo HOM05D007140 ORTHO05D008539 4.9e-07 59.3 36 83.3
CsaV3_5G034830 Cucumis sativus L. HOM05D007140 ORTHO05D008539 4.9e-07 59.3 36 83.3
Lalb_Chr21g0308581 Lupinus albus HOM05D007140 ORTHO05D008539 4.9e-07 59.3 38 76.3
PSO478G3468 Papaver somniferum HOM05D007140 ORTHO05D008539 4.9e-07 59.3 37 81.1
Psat6g222160 Pisum sativum HOM05D007140 ORTHO05D008539 4.9e-07 59.3 37 78.4
VMungo0720G0754 Vigna mungo HOM05D007140 ORTHO05D008539 4.9e-07 59.3 37 78.4
Zm00001eb126340 Zea mays HOM05D007140 ORTHO05D008539 4.9e-07 59.3 37 78.4
Oeu004318.1 Olea europaea HOM05D007140 ORTHO05D008539 6.4e-07 58.9 36 80.6
Potri.008G126800 Populus trichocarpa HOM05D007140 ORTHO05D008539 6.4e-07 58.9 37 81.1
Dinv04892 Davidia involucrata HOM05D007140 ORTHO05D008539 8.4e-07 58.5 36 83.3
Eucgr.B02880 Eucalyptus grandis HOM05D007140 ORTHO05D008539 8.4e-07 58.5 36 83.3
Gohir.D05G319100 Gossypium hirsutum HOM05D007140 ORTHO05D008539 8.4e-07 58.5 36 83.3
Gorai.009G342100 Gossypium raimondii HOM05D007140 ORTHO05D008539 8.4e-07 58.5 36 83.3
MD13G1031200 Malus domestica HOM05D007140 ORTHO05D008539 8.4e-07 58.5 36 80.6
Manes.14G110300 Manihot esculenta HOM05D007140 ORTHO05D008539 8.4e-07 58.5 36 83.3
Prupe.1G320900 Prunus persica HOM05D007140 ORTHO05D008539 8.4e-07 58.5 36 80.6
TPR.G4844 Trifolium pratense HOM05D007140 ORTHO05D008539 8.4e-07 58.5 37 75.7
TWI79G1374 Tripterygium wilfordii HOM05D007140 ORTHO05D008539 8.4e-07 58.5 36 83.3
ATR0691G199 Amborella trichopoda HOM05D007140 ORTHO05D008539 1.1e-06 58.2 36 77.8
Cfa015795 Carpinus fangiana HOM05D007140 ORTHO05D008539 1.1e-06 58.2 36 80.6
CiPaw.05G246200 Carya illinoinensis HOM05D007140 ORTHO05D008539 1.1e-06 58.2 36 80.6
Haze_00698 Corylus avellana HOM05D007140 ORTHO05D008539 1.1e-06 58.2 36 80.6
Glyma.20G123800 Glycine max HOM05D007140 ORTHO05D008539 1.1e-06 58.2 37 75.7
Lj5g0023497 Lotus japonicus HOM05D007140 ORTHO05D008539 1.1e-06 58.2 36 77.8
Oeu044323.1 Olea europaea HOM05D007140 ORTHO05D008539 1.1e-06 58.2 36 77.8
QL01p002793 Quercus lobata HOM05D007140 ORTHO05D008539 1.1e-06 58.2 36 80.6
SalBow8G0138 Salvia bowleyana HOM05D007140 ORTHO05D008539 1.1e-06 58.2 36 77.8
SHI16291 Sapria himalayana HOM05D007140 ORTHO05D008539 1.1e-06 58.2 37 78.4
Zm00001eb334820 Zea mays HOM05D007140 ORTHO05D008539 1.1e-06 58.2 34 85.3
EL10Ac6g14263 Beta vulgaris HOM05D007140 ORTHO05D008539 1.4e-06 57.8 36 75.0
Phvul.007G035100 Phaseolus vulgaris HOM05D007140 ORTHO05D008539 1.4e-06 57.8 36 77.8
Ciclev10015782m.g Citrus clementina HOM05D007140 ORTHO05D008539 1.9e-06 57.4 36 80.6
Duzib251G0133 Durio zibethinus HOM05D007140 ORTHO05D008539 1.9e-06 57.4 37 81.1
CiPaw.06G014500 Carya illinoinensis HOM05D007140 ORTHO05D008539 2.4e-06 57.0 37 75.7
DCAR_030189 Daucus carota HOM05D007140 ORTHO05D008539 2.4e-06 57.0 34 85.3
SGA_v2.0_scaffold50G18534 Striga asiatica HOM05D007140 ORTHO05D008539 2.4e-06 57.0 36 80.6
Atru.chr11.355 Acer truncatum HOM05D007140 ORTHO05D008539 3.2e-06 56.6 37 75.7
Glyma.10G266900 Glycine max HOM05D007140 ORTHO05D008539 3.2e-06 56.6 36 75.0
Cpa.g.sc65.99 Carica papaya HOM05D007140 ORTHO05D008539 4.2e-06 56.2 36 77.8
FAN12G3352 Fragaria x ananassa HOM05D007140 ORTHO05D008539 4.2e-06 56.2 33 87.9
Lalb_Chr06g0165691 Lupinus albus HOM05D007140 ORTHO05D008539 4.2e-06 56.2 37 75.7
Actinidia15238 Actinidia chinensis HOM05D007140 ORTHO05D008539 5.5e-06 55.8 36 77.8
CAN.G1489.6 Capsicum annuum HOM05D007140 ORTHO05D008539 5.5e-06 55.8 36 80.6
Nitab4.5_0000350g0190 Nicotiana tabacum HOM05D007140 ORTHO05D008539 5.5e-06 55.8 37 78.4
Sabra08G0095700 Salix brachista HOM05D007140 ORTHO05D008539 5.5e-06 55.8 36 77.8
Ah.02g128120 Amaranthus hybridus HOM05D007140 ORTHO05D008539 7.1e-06 55.5 36 72.2
Peaxi162Scf00205g00914 Petunia axillaris HOM05D007140 ORTHO05D008539 7.1e-06 55.5 37 78.4
CANSAT01G0870 Cannabis sativa HOM05D007140 ORTHO05D008539 9.3e-06 55.1 36 77.8


User provided reference genes

Program Settings