Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g31314 Brassica carinata HOM05D007242 ORTHO05D009089 8.8e-254 880.2 572 100.0
BolC7t43717H Brassica oleracea HOM05D007242 ORTHO05D009089 2.3e-214 749.2 576 89.1
C07p31760 Brassica napus HOM05D007242 ORTHO05D009089 8.9e-214 747.3 576 89.1
BcaC06g34194 Brassica carinata HOM05D007242 ORTHO05D009089 7.5e-213 744.2 576 88.5
Sp2g12820 Schrenkiella parvula HOM05D007242 ORTHO05D009089 2.6e-205 719.2 579 85.5
Thhalv10000833m.g Eutrema salsugineum HOM05D007242 ORTHO05D009089 9.2e-203 710.7 579 85.5
A06p44470 Brassica napus HOM05D007242 ORTHO05D009089 8.6e-201 704.1 582 85.6
BraA06t27320Z Brassica rapa HOM05D007242 ORTHO05D009089 3.3e-200 702.2 580 85.7
Carub.0005s0035 Capsella rubella HOM05D007242 ORTHO05D009089 8.3e-196 687.6 582 82.1
AL5G10350 Arabidopsis lyrata HOM05D007242 ORTHO05D009089 7.3e-192 674.5 582 82.3
AT2G01390 Arabidopsis thaliana HOM05D007242 ORTHO05D009089 6.2e-191 671.4 578 81.7
Aa31LG2G8550 Aethionema arabicum HOM05D007242 ORTHO05D009089 4.2e-179 632.1 573 78.9
THA.LOC104819810 Tarenaya hassleriana HOM05D007242 ORTHO05D009089 1.1e-142 511.1 575 69.2
CARHR143900 Cardamine hirsuta HOM05D007242 ORTHO05D009089 2.5e-136 490.0 316 80.7
A06p37220 Brassica napus HOM05D007242 ORTHO05D009089 1.9e-131 473.8 299 83.9
BraA06t26646Z Brassica rapa HOM05D007242 ORTHO05D009089 8.0e-122 441.8 299 80.3
Atru.chr3.510 Acer truncatum HOM05D007242 ORTHO05D009089 4.2e-115 419.5 560 50.7
Ciclev10027297m.g Citrus clementina HOM05D007242 ORTHO05D009089 2.9e-108 396.7 518 58.1
Potri.005G127500 Populus trichocarpa HOM05D007242 ORTHO05D009089 2.9e-108 396.7 556 59.9
Sabra05G0104300 Salix brachista HOM05D007242 ORTHO05D009089 2.5e-107 393.7 586 46.4
GSVIVG01019029001 Vitis vinifera HOM05D007242 ORTHO05D009089 3.6e-106 389.8 573 52.2
MD15G1269300 Malus domestica HOM05D007242 ORTHO05D009089 1.0e-105 388.3 557 59.2
Gorai.007G051500 Gossypium raimondii HOM05D007242 ORTHO05D009089 6.8e-105 385.6 563 59.7
Gohir.A11G044400 Gossypium hirsutum HOM05D007242 ORTHO05D009089 1.7e-103 380.9 554 60.1
Prupe.7G148400 Prunus persica HOM05D007242 ORTHO05D009089 1.7e-103 380.9 557 59.1
Thecc.01G042000 Theobroma cacao HOM05D007242 ORTHO05D009089 1.7e-103 380.9 565 59.3
Duzib264G0124 Durio zibethinus HOM05D007242 ORTHO05D009089 4.8e-103 379.4 564 58.3
TPR.G15492 Trifolium pratense HOM05D007242 ORTHO05D009089 5.9e-101 372.5 567 58.6
Manes.13G136000 Manihot esculenta HOM05D007242 ORTHO05D009089 7.7e-101 372.1 575 57.2
PGR102G1679 Punica granatum HOM05D007242 ORTHO05D009089 2.3e-100 370.5 573 57.4
CSS0024550 Camellia sinensis var. sinensis HOM05D007242 ORTHO05D009089 8.6e-100 368.6 559 58.1
TWI53G0783 Tripterygium wilfordii HOM05D007242 ORTHO05D009089 2.5e-99 367.1 556 58.8
Psat4g001600 Pisum sativum HOM05D007242 ORTHO05D009089 3.3e-99 366.7 571 56.9
Eucgr.B03084 Eucalyptus grandis HOM05D007242 ORTHO05D009089 5.5e-99 365.9 516 60.1
Haze_18840 Corylus avellana HOM05D007242 ORTHO05D009089 7.2e-99 365.5 559 58.0
Glyma.05G246000 Glycine max HOM05D007242 ORTHO05D009089 6.1e-98 362.5 553 57.1
QL12p024714 Quercus lobata HOM05D007242 ORTHO05D009089 1.8e-97 360.9 518 60.0
arahy.Tifrunner.gnm1.ann1.YZC3AP Arachis hypogaea HOM05D007242 ORTHO05D009089 3.0e-97 360.1 522 51.7
VMungo0251G2211 Vigna mungo HOM05D007242 ORTHO05D009089 2.6e-96 357.1 516 59.3
Medtr8g107230 Medicago truncatula HOM05D007242 ORTHO05D009089 3.4e-96 356.7 517 52.0
Lj2C896T5 Lonicera japonica HOM05D007242 ORTHO05D009089 1.3e-95 354.8 533 50.1
CANSAT35G0651 Cannabis sativa HOM05D007242 ORTHO05D009089 2.2e-95 354.0 559 56.4
Lj2A917T62 Lonicera japonica HOM05D007242 ORTHO05D009089 2.4e-94 350.5 569 47.8
Phvul.002G329700 Phaseolus vulgaris HOM05D007242 ORTHO05D009089 7.0e-94 349.0 536 58.6
CiPaw.15G142800 Carya illinoinensis HOM05D007242 ORTHO05D009089 1.0e-92 345.1 566 55.8
arahy.Tifrunner.gnm1.ann1.79NCEV Arachis hypogaea HOM05D007242 ORTHO05D009089 1.7e-92 344.4 522 50.2
ClCG02G013250 Citrullus lanatus HOM05D007242 ORTHO05D009089 1.5e-91 341.3 556 56.3
Hma1.2p1_0939F.1_g239400 Hydrangea macrophylla HOM05D007242 ORTHO05D009089 1.5e-91 341.3 558 56.8
Rhsim08G0035000 Rhododendron simsii HOM05D007242 ORTHO05D009089 1.9e-91 340.9 562 55.9
DCAR_026265 Daucus carota HOM05D007242 ORTHO05D009089 8.9e-89 332.0 553 56.2
Hma1.2p1_0268F.1_g107710 Hydrangea macrophylla HOM05D007242 ORTHO05D009089 8.9e-89 332.0 562 57.1
Oeu038867.1 Olea europaea HOM05D007242 ORTHO05D009089 8.9e-89 332.0 515 57.5
Peaxi162Scf00075g00618 Petunia axillaris HOM05D007242 ORTHO05D009089 4.4e-88 329.7 561 56.9
Lalb_Chr05g0221691 Lupinus albus HOM05D007242 ORTHO05D009089 2.2e-87 327.4 519 56.3
TAR381G0682 Trochodendron aralioides HOM05D007242 ORTHO05D009089 6.4e-87 325.9 563 55.2
CAN.G1204.3 Capsicum annuum HOM05D007242 ORTHO05D009089 8.3e-87 325.5 557 48.8
CsaV3_2G017430 Cucumis sativus L. HOM05D007242 ORTHO05D009089 8.3e-87 325.5 550 55.3
MELO3C020940.2 Cucumis melo HOM05D007242 ORTHO05D009089 1.9e-86 324.3 550 54.7
Migut.H00525 Erythranthe guttata HOM05D007242 ORTHO05D009089 2.0e-85 320.9 548 55.7
Sed0022143 Sechium edule HOM05D007242 ORTHO05D009089 2.0e-85 320.9 577 52.9
SGA_v2.0_scaffold204G41644 Striga asiatica HOM05D007242 ORTHO05D009089 3.5e-85 320.1 558 53.8
Nitab4.5_0010783g0030 Nicotiana tabacum HOM05D007242 ORTHO05D009089 3.9e-84 316.6 565 55.2
vmacro23494 Vaccinium macrocarpon HOM05D007242 ORTHO05D009089 3.3e-83 313.5 515 57.1
Aqoxy6G01016 Aquilegia oxysepala HOM05D007242 ORTHO05D009089 4.7e-82 309.7 557 54.8
Solyc01g008480.4 Solanum lycopersicum HOM05D007242 ORTHO05D009089 8.0e-82 308.9 559 54.7
Sopen01g004000 Solanum pennellii HOM05D007242 ORTHO05D009089 1.4e-81 308.1 563 54.2
HanXRQChr14g0431951 Helianthus annuus HOM05D007242 ORTHO05D009089 6.8e-81 305.8 553 53.0
Hund14133 Selenicereus undatus HOM05D007242 ORTHO05D009089 2.6e-80 303.9 511 56.6
SalBow1G2223 Salvia bowleyana HOM05D007242 ORTHO05D009089 4.9e-79 299.7 502 57.4
MSTRG.2935 Avicennia marina HOM05D007242 ORTHO05D009089 1.4e-78 298.1 550 54.9
Nn1g05103 Nelumbo nucifera HOM05D007242 ORTHO05D009089 3.2e-78 297.0 551 53.9
Peaxi162Scf00075g00617 Petunia axillaris HOM05D007242 ORTHO05D009089 3.0e-76 290.4 552 54.3
Cc07_g05120 Coffea canephora HOM05D007242 ORTHO05D009089 5.1e-76 289.7 550 53.5
MBI16_g13145_MAGBIO Magnolia biondii HOM05D007242 ORTHO05D009089 8.9e-73 278.9 514 53.7
Dinv26797 Davidia involucrata HOM05D007242 ORTHO05D009089 9.9e-72 275.4 470 59.4
EL10Ac6g14891 Beta vulgaris HOM05D007242 ORTHO05D009089 3.7e-71 273.5 560 51.6
HanXRQChr07g0193491 Helianthus annuus HOM05D007242 ORTHO05D009089 3.0e-68 263.8 478 49.8
Lsat_1_v5_gn_2_38041 Lactuca sativa HOM05D007242 ORTHO05D009089 4.7e-66 256.5 555 50.5
ATR0767G228 Amborella trichopoda HOM05D007242 ORTHO05D009089 5.2e-65 253.1 557 50.1
AT2G01360 Arabidopsis thaliana HOM05D007242 ORTHO05D009089 2.0e-64 251.1 167 76.6
AUR62008019 Chenopodium quinoa HOM05D007242 ORTHO05D009089 7.6e-64 249.2 521 52.6
CARHR143890 Cardamine hirsuta HOM05D007242 ORTHO05D009089 1.1e-62 245.4 153 78.4
COL.COLO4_04840 Corchorus olitorius HOM05D007242 ORTHO05D009089 1.1e-59 235.3 312 41.7
Nitab4.5_0008184g0020 Nicotiana tabacum HOM05D007242 ORTHO05D009089 2.1e-58 231.1 290 46.2
Gohir.D11G047900 Gossypium hirsutum HOM05D007242 ORTHO05D009089 7.1e-54 216.1 413 61.5
Zm00001eb288630 Zea mays HOM05D007242 ORTHO05D009089 1.0e-52 212.2 534 40.1
MD02G1154900 Malus domestica HOM05D007242 ORTHO05D009089 3.3e-51 207.2 419 33.9
Os10g0358700 Oryza sativa ssp. japonica HOM05D007242 ORTHO05D009089 4.3e-51 206.8 547 40.2
ECA246G4655 Erigeron canadensis HOM05D007242 ORTHO05D009089 2.6e-48 197.6 280 41.8
BcaC06g34182 Brassica carinata HOM05D007242 ORTHO05D009089 1.3e-47 195.3 113 86.7
BcaC06g34191 Brassica carinata HOM05D007242 ORTHO05D009089 4.2e-46 190.3 138 74.6
BcaB08g34298 Brassica carinata HOM05D007242 ORTHO05D009089 2.5e-43 181.0 109 87.2
Glyma.08G053933 Glycine max HOM05D007242 ORTHO05D009089 1.4e-41 175.3 218 43.1
vmacro22084 Vaccinium macrocarpon HOM05D007242 ORTHO05D009089 5.1e-36 156.8 294 33.7
COL.COLO4_22144 Corchorus olitorius HOM05D007242 ORTHO05D009089 4.3e-35 153.7 101 66.3
CDE07G1297 Ceratophyllum demersum HOM05D007242 ORTHO05D009089 5.7e-35 153.3 312 65.7
AUR62003202 Chenopodium quinoa HOM05D007242 ORTHO05D009089 2.8e-34 151.0 287 34.5
HPP92_006079 Vanilla planifolia HOM05D007242 ORTHO05D009089 1.0e-31 142.5 202 40.6
Glyma.08G053867 Glycine max HOM05D007242 ORTHO05D009089 6.5e-31 139.8 86 66.3
Lj4C132T2 Lonicera japonica HOM05D007242 ORTHO05D009089 3.4e-16 90.9 101 45.5
HanXRQChr14g0431911 Helianthus annuus HOM05D007242 ORTHO05D009089 3.8e-15 87.4 137 40.1
Atru.chr3.508 Acer truncatum HOM05D007242 ORTHO05D009089 4.7e-13 80.5 75 57.3
EL10Ac4g08697 Beta vulgaris HOM05D007242 ORTHO05D009089 3.0e-12 77.8 138 36.2
Zm00001eb348820 Zea mays HOM05D007242 ORTHO05D009089 5.1e-12 77.0 141 38.3
Atru.chr3.509 Acer truncatum HOM05D007242 ORTHO05D009089 1.6e-08 65.5 49 65.3
Dinv18613 Davidia involucrata HOM05D006999 ORTHO05D008936 2.0e-08 65.1 187 24.1
Dinv26229 Davidia involucrata HOM05D006999 ORTHO05D008936 2.0e-08 65.1 187 24.1
THA.LOC104809214 Tarenaya hassleriana HOM05D004079 ORTHO05D005437 1.7e-07 62.0 121 33.1
CARHR068060 Cardamine hirsuta HOM05D004079 ORTHO05D005437 2.9e-07 61.2 115 33.9
Sabra15G0091500 Salix brachista HOM05D004079 ORTHO05D005437 5.0e-07 60.5 95 36.8
HPP92_006080 Vanilla planifolia HOM05D007242 ORTHO05D009089 5.0e-07 60.5 80 38.8
Mapoly0026s0069 Marchantia polymorpha HOM05D004079 ORTHO05D005437 8.5e-07 59.7 109 30.3
Potri.015G066400 Populus trichocarpa HOM05D004079 ORTHO05D005437 8.5e-07 59.7 99 35.4
Prupe.5G184700 Prunus persica HOM05D004079 ORTHO05D005437 8.5e-07 59.7 119 31.1
Mapoly0114s0020 Marchantia polymorpha HOM05D004079 ORTHO05D005437 1.1e-06 59.3 97 30.9
PSO782G0394 Papaver somniferum HOM05D004079 ORTHO05D005437 1.5e-06 58.9 119 35.3
AagrBONN_evm.TU.Sc2ySwM_117.3400 Anthoceros agrestis HOM05D004079 ORTHO05D005437 1.9e-06 58.5 90 28.9
CiPaw.11G036400 Carya illinoinensis HOM05D004079 ORTHO05D005437 1.9e-06 58.5 105 33.3
Aa31LG4G4980 Aethionema arabicum HOM05D004079 ORTHO05D005437 2.5e-06 58.2 91 36.3
ATR0006G044 Amborella trichopoda HOM05D004079 ORTHO05D009709 2.5e-06 58.2 117 30.8
AagrBONN_evm.TU.Sc2ySwM_228.5809 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.5e-06 58.2 270 21.9
Pp3c7_10060 Physcomitrium patens HOM05D004079 ORTHO05D005437 2.5e-06 58.2 95 33.7
EL10Ac5g10922 Beta vulgaris HOM05D004079 ORTHO05D005437 3.2e-06 57.8 99 33.3
COL.COLO4_37914 Corchorus olitorius HOM05D004079 ORTHO05D005437 3.2e-06 57.8 119 30.3
FvH4_5g15730 Fragaria vesca HOM05D004079 ORTHO05D005437 3.2e-06 57.8 155 29.0
FAN18G0859 Fragaria x ananassa HOM05D004079 ORTHO05D005437 3.2e-06 57.8 155 29.0
Manes.06G097200 Manihot esculenta HOM05D004079 ORTHO05D005437 3.2e-06 57.8 112 30.4
PSO832G1391 Papaver somniferum HOM05D004079 ORTHO05D005437 3.2e-06 57.8 102 41.2
QL10p014896 Quercus lobata HOM05D004079 ORTHO05D005437 3.2e-06 57.8 123 32.5
SEGI_13247 Sequoiadendron giganteum HOM05D000238 ORTHO05D005437 3.2e-06 57.8 93 35.5
A07p29240 Brassica napus HOM05D004079 ORTHO05D005437 4.2e-06 57.4 120 31.7
C06p33140 Brassica napus HOM05D004079 ORTHO05D005437 4.2e-06 57.4 120 31.7
BraA07t30563Z Brassica rapa HOM05D004079 ORTHO05D005437 4.2e-06 57.4 120 31.7
CSS0006147 Camellia sinensis var. sinensis HOM05D007242 ORTHO05D009089 4.2e-06 57.4 95 40.0
CsaV3_5G039930 Cucumis sativus L. HOM05D000001 ORTHO05D009433 4.2e-06 57.4 187 22.5
FAN08G0428 Fragaria x ananassa HOM05D004079 ORTHO05D005437 4.2e-06 57.4 155 29.0
FAN13G1290 Fragaria x ananassa HOM05D004079 ORTHO05D005437 4.2e-06 57.4 155 29.0
Oeu006174.1 Olea europaea HOM05D004079 ORTHO05D005437 4.2e-06 57.4 142 28.2
EL10Ac8g18299 Beta vulgaris HOM05D003056 ORTHO05D003422 5.5e-06 57.0 100 35.0
BolC6t38429H Brassica oleracea HOM05D004079 ORTHO05D005437 5.5e-06 57.0 120 31.7
PSO591G0491 Papaver somniferum HOM05D004079 ORTHO05D005437 5.5e-06 57.0 102 40.2
Mapoly0050s0075 Marchantia polymorpha HOM05D004079 ORTHO05D005437 7.2e-06 56.6 97 30.9
BcaB02g06965 Brassica carinata HOM05D004079 ORTHO05D005437 9.4e-06 56.2 91 35.2
Cc00_g10920 Coffea canephora HOM05D000001 ORTHO05D010175 9.4e-06 56.2 166 25.3
FAN04G1937 Fragaria x ananassa HOM05D004079 ORTHO05D005437 9.4e-06 56.2 155 28.4
MD06G1185900 Malus domestica HOM05D004079 ORTHO05D005437 9.4e-06 56.2 120 30.0
SGA_v2.0_scaffold56G20067 Striga asiatica HOM05D004079 ORTHO05D005437 9.4e-06 56.2 82 39.0


User provided reference genes

Program Settings