Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g31287 Brassica carinata HOM05D006041 ORTHO05D007473 2.9e-239 831.6 461 100.0
BraA06t27296Z Brassica rapa HOM05D006041 ORTHO05D007473 1.2e-221 773.1 461 93.1
C07p32270 Brassica napus HOM05D006041 ORTHO05D007473 6.2e-218 760.8 466 92.7
BolC7t43765H Brassica oleracea HOM05D006041 ORTHO05D007473 5.3e-217 757.7 468 91.9
BcaC06g34139 Brassica carinata HOM05D006041 ORTHO05D007473 1.2e-216 756.5 468 91.7
A06p44210 Brassica napus HOM05D006041 ORTHO05D007473 7.1e-214 747.3 464 91.6
Thhalv10004151m.g Eutrema salsugineum HOM05D006041 ORTHO05D007473 3.2e-206 721.8 473 84.8
Sp2g13100 Schrenkiella parvula HOM05D006041 ORTHO05D007473 1.8e-204 716.1 473 85.4
Carub.0005s0060 Capsella rubella HOM05D006041 ORTHO05D007473 8.5e-199 697.2 482 82.0
AL5G10750 Arabidopsis lyrata HOM05D006041 ORTHO05D007473 1.5e-195 686.4 475 82.3
AT2G01650 Arabidopsis thaliana HOM05D006041 ORTHO05D007473 1.7e-194 682.9 474 81.4
CARHR144220 Cardamine hirsuta HOM05D006041 ORTHO05D007473 4.5e-192 674.9 467 82.9
Aa31LG2G8250 Aethionema arabicum HOM05D006041 ORTHO05D007473 1.3e-183 646.7 471 77.7
THA.LOC104805081 Tarenaya hassleriana HOM05D006041 ORTHO05D007473 9.8e-163 577.4 487 68.4
COL.COLO4_16567 Corchorus olitorius HOM05D006041 ORTHO05D007473 1.3e-146 523.9 481 61.3
Manes.15G133200 Manihot esculenta HOM05D006041 ORTHO05D007473 6.4e-146 521.5 475 60.8
Cpa.g.c27573.2 Carica papaya HOM05D006041 ORTHO05D007473 1.1e-145 520.8 479 60.8
Thecc.02G290600 Theobroma cacao HOM05D006041 ORTHO05D007473 3.5e-144 515.8 479 63.5
Cfa015002 Carpinus fangiana HOM05D006041 ORTHO05D007473 1.5e-142 510.4 475 59.4
Gorai.005G158800 Gossypium raimondii HOM05D006041 ORTHO05D007473 4.3e-142 508.8 483 60.0
Sabra08G0102300 Salix brachista HOM05D006041 ORTHO05D007473 7.3e-142 508.1 487 59.8
Eucgr.G02114 Eucalyptus grandis HOM05D006041 ORTHO05D007473 9.5e-142 507.7 479 61.6
PGR142G4228 Punica granatum HOM05D006041 ORTHO05D007473 1.2e-141 507.3 482 62.4
Dinv26256 Davidia involucrata HOM05D006041 ORTHO05D007473 2.1e-141 506.5 475 59.8
Haze_10912 Corylus avellana HOM05D006041 ORTHO05D007473 3.6e-141 505.8 479 58.9
Gohir.A01G147900 Gossypium hirsutum HOM05D006041 ORTHO05D007473 3.4e-139 499.2 470 59.6
Duzib268G1057 Durio zibethinus HOM05D006041 ORTHO05D007473 7.5e-139 498.0 482 62.9
CsaV3_5G028000 Cucumis sativus L. HOM05D006041 ORTHO05D007473 6.4e-138 495.0 470 56.6
Lalb_Chr05g0222281 Lupinus albus HOM05D006041 ORTHO05D007473 1.1e-137 494.2 480 58.5
Ciclev10015068m.g Citrus clementina HOM05D006041 ORTHO05D007473 1.4e-137 493.8 487 58.9
TWI74G1002 Tripterygium wilfordii HOM05D006041 ORTHO05D007473 3.2e-137 492.7 476 57.4
Duzib251G0740 Durio zibethinus HOM05D006041 ORTHO05D007473 5.4e-137 491.9 479 60.1
Haze_10913 Corylus avellana HOM05D006041 ORTHO05D007473 7.1e-137 491.5 505 55.8
Gorai.002G173400 Gossypium raimondii HOM05D006041 ORTHO05D007473 2.1e-136 490.0 469 62.7
Nitab4.5_0000238g0060 Nicotiana tabacum HOM05D006041 ORTHO05D007473 4.6e-136 488.8 464 57.8
Nitab4.5_0009602g0010 Nicotiana tabacum HOM05D006041 ORTHO05D007473 7.8e-136 488.0 464 57.3
Gohir.D01G141100 Gossypium hirsutum HOM05D006041 ORTHO05D007473 1.7e-135 486.9 469 62.3
Rhsim09G0037900 Rhododendron simsii HOM05D006041 ORTHO05D007473 1.7e-135 486.9 484 56.4
DCAR_007323 Daucus carota HOM05D006041 ORTHO05D007473 2.3e-135 486.5 471 57.1
TAR629G0174 Trochodendron aralioides HOM05D006041 ORTHO05D007473 3.9e-135 485.7 484 55.8
Nn4g24305 Nelumbo nucifera HOM05D006041 ORTHO05D007473 5.1e-135 485.3 478 56.1
Solyc01g005430.3 Solanum lycopersicum HOM05D006041 ORTHO05D007473 6.6e-135 485.0 462 58.0
RcHm_v2.0_Chr4g0443331 Rosa chinensis HOM05D006041 ORTHO05D007473 8.6e-135 484.6 474 54.9
MELO3C005281.2 Cucumis melo HOM05D006041 ORTHO05D007473 1.1e-134 484.2 470 56.0
MD13G1029800 Malus domestica HOM05D006041 ORTHO05D007473 2.5e-134 483.0 485 58.4
AUR62003915 Chenopodium quinoa HOM05D006041 ORTHO05D007473 4.3e-134 482.3 501 55.9
Cc11_g08020 Coffea canephora HOM05D006041 ORTHO05D007473 9.5e-134 481.1 488 55.9
MBI19_g21093_MAGBIO Magnolia biondii HOM05D006041 ORTHO05D007473 2.1e-133 479.9 477 56.6
MD16G1020600 Malus domestica HOM05D006041 ORTHO05D007473 1.1e-132 477.6 491 55.2
CSS0021041 Camellia sinensis var. sinensis HOM05D006041 ORTHO05D007473 1.4e-132 477.2 494 53.6
CSS0021655 Camellia sinensis var. sinensis HOM05D006041 ORTHO05D007473 1.4e-132 477.2 494 53.6
VMungo0251G2799 Vigna mungo HOM05D006041 ORTHO05D007473 1.8e-132 476.9 483 58.6
PGSC0003DMG400032118 Solanum tuberosum HOM05D006041 ORTHO05D007473 3.1e-132 476.1 464 56.9
vmacro00556 Vaccinium macrocarpon HOM05D006041 ORTHO05D007473 3.1e-132 476.1 471 56.9
Atru.chr11.510 Acer truncatum HOM05D006041 ORTHO05D007473 4.0e-132 475.7 479 59.1
Oeu016281.1 Olea europaea HOM05D006041 ORTHO05D007473 6.8e-132 474.9 468 55.1
Glyma.08G042900 Glycine max HOM05D006041 ORTHO05D007473 1.2e-131 474.2 478 57.5
Medtr8g104930 Medicago truncatula HOM05D006041 ORTHO05D007473 4.4e-131 472.2 478 59.0
Phvul.002G319700 Phaseolus vulgaris HOM05D006041 ORTHO05D007473 9.9e-131 471.1 485 57.5
HanXRQChr08g0212441 Helianthus annuus HOM05D006041 ORTHO05D007473 3.8e-130 469.2 480 59.2
Lj4g0006027 Lotus japonicus HOM05D006041 ORTHO05D007473 6.4e-130 468.4 481 56.3
Sopen01g001440 Solanum pennellii HOM05D006041 ORTHO05D007473 6.4e-130 468.4 462 56.1
CAN.G1130.10 Capsicum annuum HOM05D006041 ORTHO05D007473 8.4e-130 468.0 503 53.9
Glyma.05G235400 Glycine max HOM05D006041 ORTHO05D007473 1.1e-129 467.6 479 57.6
Lj6A740T67 Lonicera japonica HOM05D006041 ORTHO05D007473 1.4e-129 467.2 479 55.1
Lsat_1_v5_gn_8_45641 Lactuca sativa HOM05D006041 ORTHO05D007473 3.2e-129 466.1 474 58.2
EL10Ac6g15713 Beta vulgaris HOM05D006041 ORTHO05D007473 7.1e-129 464.9 514 51.6
Prupe.1G331600 Prunus persica HOM05D006041 ORTHO05D007473 2.7e-128 463.0 481 56.5
FvH4_4g33820 Fragaria vesca HOM05D006041 ORTHO05D007473 4.6e-128 462.2 471 56.1
Peaxi162Scf00655g00023 Petunia axillaris HOM05D006041 ORTHO05D007473 7.8e-128 461.5 454 57.0
Migut.E00465 Erythranthe guttata HOM05D006041 ORTHO05D007473 1.1e-126 457.6 486 56.6
Manes.17G082400 Manihot esculenta HOM05D006041 ORTHO05D007473 1.9e-126 456.8 474 58.0
SalBow2G0340 Salvia bowleyana HOM05D006041 ORTHO05D007473 7.3e-126 454.9 468 53.4
Sc03g0001760 Simmondsia chinensis HOM05D006041 ORTHO05D007473 9.6e-126 454.5 501 55.1
arahy.Tifrunner.gnm1.ann1.BAL5EB Arachis hypogaea HOM05D006041 ORTHO05D007473 1.2e-125 454.1 475 56.0
FAN12G3784 Fragaria x ananassa HOM05D006041 ORTHO05D007473 1.2e-125 454.1 479 55.5
ClCG01G006460 Citrullus lanatus HOM05D006041 ORTHO05D007473 2.1e-125 453.4 471 53.5
MSTRG.2140 Avicennia marina HOM05D006041 ORTHO05D007473 1.1e-124 451.1 471 53.3
SGA_v2.0_scaffold139G35400 Striga asiatica HOM05D006041 ORTHO05D007473 2.4e-124 449.9 475 53.5
arahy.Tifrunner.gnm1.ann1.IVEQ23 Arachis hypogaea HOM05D006041 ORTHO05D007473 3.1e-124 449.5 471 54.6
TAR371G0590 Trochodendron aralioides HOM05D006041 ORTHO05D007473 3.1e-124 449.5 481 54.5
Ah.03g145700 Amaranthus hybridus HOM05D006041 ORTHO05D007473 1.2e-123 447.6 496 56.9
FAN22G1094 Fragaria x ananassa HOM05D006041 ORTHO05D007473 2.0e-123 446.8 492 53.3
Ca_17289_v3 Cicer arietinum L. HOM05D006041 ORTHO05D007473 5.8e-123 445.3 479 53.2
FAN17G0347 Fragaria x ananassa HOM05D006041 ORTHO05D007473 1.3e-122 444.1 480 54.0
Psat7g009240 Pisum sativum HOM05D006041 ORTHO05D007473 1.3e-122 444.1 473 56.2
TPR.G32714 Trifolium pratense HOM05D006041 ORTHO05D007473 2.1e-120 436.8 476 53.8
ECA233G3443 Erigeron canadensis HOM05D006041 ORTHO05D007473 1.1e-118 431.0 466 52.6
unitig_27.g25310 Utricularia gibba HOM05D006041 ORTHO05D007473 1.9e-118 430.3 473 51.4
CANSAT01G0691 Cannabis sativa HOM05D006041 ORTHO05D007473 1.4e-116 424.1 483 56.3
Sed0015632 Sechium edule HOM05D006041 ORTHO05D007473 1.3e-114 417.5 368 57.1
ATR0753G012 Amborella trichopoda HOM05D006041 ORTHO05D007473 2.2e-114 416.8 475 50.7
PSO478G4621 Papaver somniferum HOM05D006041 ORTHO05D007473 4.2e-113 412.5 487 48.7
PSO017G0247 Papaver somniferum HOM05D006041 ORTHO05D007473 1.6e-112 410.6 487 49.1
Potri.008G133700 Populus trichocarpa HOM05D006041 ORTHO05D007473 4.3e-110 402.5 408 57.6
CDE07G0862 Ceratophyllum demersum HOM05D006041 ORTHO05D007473 9.6e-110 401.4 475 50.7
CiPaw.05G190300 Carya illinoinensis HOM05D006041 ORTHO05D007473 6.9e-108 395.2 399 58.4
AUR62038228 Chenopodium quinoa HOM05D006041 ORTHO05D007473 1.7e-106 390.6 481 50.3
Gohir.D02G141500 Gossypium hirsutum HOM05D006041 ORTHO05D007473 2.1e-104 383.6 409 55.7
QL03p034952 Quercus lobata HOM05D006041 ORTHO05D007473 1.3e-103 380.9 430 52.1
Gohir.A03G117900 Gossypium hirsutum HOM05D006041 ORTHO05D007473 3.3e-102 376.3 408 54.9
Dinv18641 Davidia involucrata HOM05D006041 ORTHO05D007473 7.4e-102 375.2 439 51.3
Aqoxy3G00037 Aquilegia oxysepala HOM05D006041 ORTHO05D007473 9.0e-92 341.7 498 49.2
Sed0013468 Sechium edule HOM05D006041 ORTHO05D007473 5.5e-89 332.4 295 55.9
SGA_v2.0_scaffold151G36726 Striga asiatica HOM05D006041 ORTHO05D007473 2.8e-85 320.1 381 47.2
Zm00001eb099250 Zea mays HOM05D006041 ORTHO05D007473 3.0e-79 300.1 473 44.0
Aa31LG3G2990 Aethionema arabicum HOM05D006041 ORTHO05D007473 3.4e-75 286.6 217 72.8
SEGI_21307 Sequoiadendron giganteum HOM05D006041 ORTHO05D007473 3.2e-73 280.0 405 42.7
Zm00001eb312180 Zea mays HOM05D006041 ORTHO05D007473 2.7e-72 276.9 472 41.3
GSVIVG01011678001 Vitis vinifera HOM05D006041 ORTHO05D007473 7.9e-72 275.4 180 76.1
CDE06G1197 Ceratophyllum demersum HOM05D006041 ORTHO05D007473 2.0e-70 270.8 468 41.0
Hma1.2p1_0089F.1_g045430 Hydrangea macrophylla HOM05D006041 ORTHO05D007473 6.7e-63 245.7 315 47.0
Oeu063578.1 Olea europaea HOM05D006041 ORTHO05D007473 3.8e-58 229.9 302 46.7
CBR_g3474 Chara braunii HOM05D006041 ORTHO05D007473 5.0e-58 229.6 368 39.4
SGA_v2.0_scaffold151G36757 Striga asiatica HOM05D006041 ORTHO05D007473 5.0e-58 229.6 221 57.0
HPP92_009644 Vanilla planifolia HOM05D006041 ORTHO05D007473 1.9e-57 227.6 238 52.1
Os09g0401600 Oryza sativa ssp. japonica HOM05D006041 ORTHO05D007473 3.0e-55 220.3 224 51.3
Actinidia34032 Actinidia chinensis HOM05D006041 ORTHO05D007473 8.3e-53 212.2 309 43.4
Aa31sc215G20 Aethionema arabicum HOM05D006041 ORTHO05D007473 2.5e-49 200.7 151 72.8
Mapoly0081s0058 Marchantia polymorpha HOM05D006041 ORTHO05D007473 7.5e-46 189.1 309 36.2
Lalb_Chr16g0387681 Lupinus albus HOM05D006041 ORTHO05D007473 1.5e-38 164.9 317 37.9
SGA_v2.0_scaffold151G36758 Striga asiatica HOM05D006041 ORTHO05D007473 4.6e-35 153.3 234 41.5
arahy.Tifrunner.gnm1.ann1.I8TFGP Arachis hypogaea HOM05D006041 ORTHO05D007473 8.9e-31 139.0 295 32.5
Psat7g181280 Pisum sativum HOM05D006041 ORTHO05D007473 1.6e-24 118.2 164 43.9
CAN.G3.6 Capsicum annuum HOM05D006041 ORTHO05D007473 5.2e-23 113.2 185 41.1
SMO276G0024 Selaginella moellendorffii HOM05D006041 ORTHO05D007473 1.7e-21 108.2 94 56.4
QL10p059701 Quercus lobata HOM05D006041 ORTHO05D007473 7.1e-20 102.8 179 47.5
Actinidia25876 Actinidia chinensis HOM05D001822 ORTHO05D001744 3.9e-18 97.1 110 52.7
Actinidia34031 Actinidia chinensis HOM05D006041 ORTHO05D007473 3.6e-16 90.5 74 62.2
MCO04G546 Micromonas commoda HOM05D006041 ORTHO05D007473 3.6e-16 90.5 242 30.2
RcHm_v2.0_Chr2g0174181 Rosa chinensis HOM05D004631 ORTHO05D005223 6.2e-08 63.2 120 32.5
Duzib147G1024 Durio zibethinus HOM05D004631 ORTHO05D005223 3.1e-07 60.8 120 32.5
CSS0005098 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 4.0e-07 60.5 118 33.9
CSS0019664 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 4.0e-07 60.5 118 33.9
RhsimUnG0241300 Rhododendron simsii HOM05D004631 ORTHO05D005223 5.2e-07 60.1 144 31.2
Aqoxy5G03556 Aquilegia oxysepala HOM05D004631 ORTHO05D005223 6.9e-07 59.7 117 34.2
FAN02G2863 Fragaria x ananassa HOM05D004631 ORTHO05D005223 9.0e-07 59.3 120 31.7
Thecc.04G027600 Theobroma cacao HOM05D004631 ORTHO05D005223 9.0e-07 59.3 158 29.1
FvH4_6g52650 Fragaria vesca HOM05D004631 ORTHO05D005223 1.2e-06 58.9 120 31.7
CANSAT64G0886 Cannabis sativa HOM05D004631 ORTHO05D005223 1.5e-06 58.5 119 31.9
Ciclev10016175m.g Citrus clementina HOM05D004631 ORTHO05D005223 1.5e-06 58.5 120 34.2
Actinidia35792 Actinidia chinensis HOM05D004631 ORTHO05D005223 2.6e-06 57.8 205 27.3
CiPaw.04G033100 Carya illinoinensis HOM05D004631 ORTHO05D005223 4.4e-06 57.0 211 29.4
MSTRG.3110 Avicennia marina HOM05D004631 ORTHO05D005223 5.8e-06 56.6 122 33.6
MSTRG.24067 Avicennia marina HOM05D004631 ORTHO05D005223 7.6e-06 56.2 120 31.7
MD09G1017300 Malus domestica HOM05D004631 ORTHO05D005223 7.6e-06 56.2 136 30.1
MD17G1018100 Malus domestica HOM05D004631 ORTHO05D005223 7.6e-06 56.2 173 28.9
Manes.15G156400 Manihot esculenta HOM05D004631 ORTHO05D005223 7.6e-06 56.2 159 26.4
Peaxi162Scf00753g00333 Petunia axillaris HOM05D002747 ORTHO05D003069 7.6e-06 56.2 57 45.6
TWI53G0635 Tripterygium wilfordii HOM05D002747 ORTHO05D003069 7.6e-06 56.2 53 45.3
Duzib133G0088 Durio zibethinus HOM05D002747 ORTHO05D003069 9.9e-06 55.8 53 45.3
Lj7A605T75 Lonicera japonica HOM05D004631 ORTHO05D005223 9.9e-06 55.8 118 35.6
Rhsim08G0046200 Rhododendron simsii HOM05D004631 ORTHO05D005223 9.9e-06 55.8 119 31.1


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