Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g31279 Brassica carinata HOM05D007597 ORTHO05D009608 2.4e-96 355.5 180 100.0
BcaC06g34122 Brassica carinata HOM05D007597 ORTHO05D009608 1.1e-74 283.5 172 85.5
BolC7t43776H Brassica oleracea HOM05D007597 ORTHO05D009608 1.1e-74 283.5 172 85.5
A06p44080 Brassica napus HOM05D007597 ORTHO05D009608 5.7e-74 281.2 172 86.6
C07p32430 Brassica napus HOM05D007597 ORTHO05D009608 5.7e-74 281.2 172 84.9
BraA06t27282Z Brassica rapa HOM05D007597 ORTHO05D009608 5.7e-74 281.2 172 86.6
Sp2g13210 Schrenkiella parvula HOM05D007597 ORTHO05D009608 3.8e-62 241.9 176 76.7
Thhalv10004999m.g Eutrema salsugineum HOM05D007597 ORTHO05D009608 1.2e-60 236.9 181 72.4
AL5G10880 Arabidopsis lyrata HOM05D007597 ORTHO05D009608 8.2e-57 224.2 173 71.7
AT2G01755 Arabidopsis thaliana HOM05D007597 ORTHO05D009608 5.5e-53 211.5 178 67.4
CARHR144330 Cardamine hirsuta HOM05D007597 ORTHO05D009608 3.6e-52 208.8 183 68.9
Aa31LG2G8130 Aethionema arabicum HOM05D007597 ORTHO05D009608 1.8e-51 206.5 183 66.1
THA.LOC104824124 Tarenaya hassleriana HOM05D007597 ORTHO05D009608 2.7e-39 166.0 125 71.2
Carub.0005s0071 Capsella rubella HOM05D007597 ORTHO05D009608 6.5e-38 161.4 92 88.0
Cc11_g07700 Coffea canephora HOM05D007597 ORTHO05D009608 2.0e-34 149.8 151 57.0
Duzib251G0764 Durio zibethinus HOM05D007597 ORTHO05D009608 2.0e-34 149.8 138 59.4
Atru.chr11.909 Acer truncatum HOM05D007597 ORTHO05D009608 4.4e-34 148.7 124 64.5
Dinv07717 Davidia involucrata HOM05D007597 ORTHO05D009608 7.5e-34 147.9 112 67.0
AUR62037405 Chenopodium quinoa HOM05D007597 ORTHO05D009608 9.8e-34 147.5 125 62.4
Actinidia38436 Actinidia chinensis HOM05D007597 ORTHO05D009608 1.3e-33 147.1 115 63.5
CiPaw.06G052900 Carya illinoinensis HOM05D007597 ORTHO05D009608 2.8e-33 146.0 119 64.7
Nn3g20775 Nelumbo nucifera HOM05D007597 ORTHO05D009608 8.3e-33 144.4 132 56.8
Rhsim04G0170700 Rhododendron simsii HOM05D007597 ORTHO05D009608 8.3e-33 144.4 123 62.6
AUR62034992 Chenopodium quinoa HOM05D007597 ORTHO05D009608 1.4e-32 143.7 117 64.1
Haze_10869 Corylus avellana HOM05D007597 ORTHO05D009608 1.8e-32 143.3 117 65.8
Peaxi162Scf00937g00322 Petunia axillaris HOM05D007597 ORTHO05D009608 1.8e-32 143.3 118 61.9
VMungo1215G2214 Vigna mungo HOM05D007597 ORTHO05D009608 3.1e-32 142.5 157 50.3
CANSAT01G1232 Cannabis sativa HOM05D007597 ORTHO05D009608 7.0e-32 141.4 179 45.3
Phvul.003G017900 Phaseolus vulgaris HOM05D007597 ORTHO05D009608 7.0e-32 141.4 151 51.0
Cfa015029 Carpinus fangiana HOM05D007597 ORTHO05D009608 9.1e-32 141.0 115 64.3
ECA246G4875 Erigeron canadensis HOM05D007597 ORTHO05D009608 9.1e-32 141.0 154 53.9
EL10Ac1g02363 Beta vulgaris HOM05D007597 ORTHO05D009608 1.6e-31 140.2 112 63.4
QL93p0203_0030 Quercus lobata HOM05D007597 ORTHO05D009608 1.6e-31 140.2 117 64.1
Gohir.D04G186400 Gossypium hirsutum HOM05D007597 ORTHO05D009608 2.7e-31 139.4 124 58.9
MD13G1019900 Malus domestica HOM05D007597 ORTHO05D009608 1.0e-30 137.5 152 52.6
Gohir.A04G143100 Gossypium hirsutum HOM05D007597 ORTHO05D009608 2.3e-30 136.3 149 54.4
HanXRQChr17g0550621 Helianthus annuus HOM05D007597 ORTHO05D009608 2.3e-30 136.3 146 54.8
Lalb_Chr10g0095671 Lupinus albus HOM05D007597 ORTHO05D009608 5.0e-30 135.2 113 59.3
PSO478G0215 Papaver somniferum HOM05D007597 ORTHO05D009608 5.0e-30 135.2 119 59.7
ClCG07G005520 Citrullus lanatus HOM05D007597 ORTHO05D009608 1.1e-29 134.0 110 60.9
MSTRG.13629 Avicennia marina HOM05D007597 ORTHO05D009608 1.5e-29 133.7 140 50.0
FAN12G3867 Fragaria x ananassa HOM05D007597 ORTHO05D009608 1.5e-29 133.7 152 51.3
PSO017G5208 Papaver somniferum HOM05D007597 ORTHO05D009608 1.9e-29 133.3 119 58.0
Aqoxy1G03694 Aquilegia oxysepala HOM05D007597 ORTHO05D009608 2.5e-29 132.9 124 55.6
Potri.008G135400 Populus trichocarpa HOM05D007597 ORTHO05D009608 2.5e-29 132.9 147 52.4
TPR.G36945 Trifolium pratense HOM05D007597 ORTHO05D009608 3.2e-29 132.5 117 59.8
Lj2g0017292 Lotus japonicus HOM05D007597 ORTHO05D009608 4.2e-29 132.1 150 49.3
Medtr1g032560 Medicago truncatula HOM05D007597 ORTHO05D009608 4.2e-29 132.1 119 58.0
Gorai.012G182800 Gossypium raimondii HOM05D007597 ORTHO05D009608 5.5e-29 131.7 124 56.5
Ciclev10016899m.g Citrus clementina HOM05D007597 ORTHO05D009608 7.2e-29 131.3 146 51.4
arahy.Tifrunner.gnm1.ann1.80S20J Arachis hypogaea HOM05D007597 ORTHO05D009608 9.5e-29 131.0 123 56.1
RcHm_v2.0_Chr4g0442791 Rosa chinensis HOM05D007597 ORTHO05D009608 9.5e-29 131.0 152 52.0
FAN22G0955 Fragaria x ananassa HOM05D007597 ORTHO05D009608 1.2e-28 130.6 152 51.3
CSS0036739 Camellia sinensis var. sinensis HOM05D007597 ORTHO05D009608 1.6e-28 130.2 116 58.6
Psat6g046800 Pisum sativum HOM05D007597 ORTHO05D009608 1.6e-28 130.2 118 60.2
FvH4_4g33480 Fragaria vesca HOM05D007597 ORTHO05D009608 2.1e-28 129.8 152 50.7
Glyma.02G085800 Glycine max HOM05D007597 ORTHO05D009608 2.1e-28 129.8 165 47.3
Lsat_1_v5_gn_1_105200 Lactuca sativa HOM05D007597 ORTHO05D009608 2.1e-28 129.8 161 49.7
FAN17G0527 Fragaria x ananassa HOM05D007597 ORTHO05D009608 2.8e-28 129.4 141 52.5
Prupe.1G334100 Prunus persica HOM05D007597 ORTHO05D009608 2.8e-28 129.4 97 64.9
arahy.Tifrunner.gnm1.ann1.FU0M5P Arachis hypogaea HOM05D007597 ORTHO05D009608 4.7e-28 128.6 124 55.6
GSVIVG01011651001 Vitis vinifera HOM05D007597 ORTHO05D009608 4.7e-28 128.6 142 50.7
DCAR_030495 Daucus carota HOM05D007597 ORTHO05D009608 2.3e-27 126.3 117 54.7
vmacro08570 Vaccinium macrocarpon HOM05D007597 ORTHO05D009608 2.3e-27 126.3 139 53.2
Zm00001eb216220 Zea mays HOM05D007597 ORTHO05D009608 3.0e-27 125.9 117 53.8
Sabra08G0103400 Salix brachista HOM05D007597 ORTHO05D009608 4.0e-27 125.6 146 50.0
Cpa.g.sc2.188 Carica papaya HOM05D007597 ORTHO05D009608 5.2e-27 125.2 115 59.1
Thecc.02G293900 Theobroma cacao HOM05D007597 ORTHO05D009608 6.8e-27 124.8 93 65.6
TWI53G0585 Tripterygium wilfordii HOM05D007597 ORTHO05D009608 6.8e-27 124.8 119 54.6
MELO3C016661.2 Cucumis melo HOM05D007597 ORTHO05D009608 8.8e-27 124.4 103 63.1
Solyc03g006540.3 Solanum lycopersicum HOM05D007597 ORTHO05D009608 1.5e-26 123.6 166 44.6
Migut.E00488 Erythranthe guttata HOM05D007597 ORTHO05D009608 3.4e-26 122.5 134 53.0
Eucgr.G02097 Eucalyptus grandis HOM05D007597 ORTHO05D009608 3.4e-26 122.5 123 56.9
ATR0118G012 Amborella trichopoda HOM05D007597 ORTHO05D009608 5.7e-26 121.7 115 53.0
SalBow2G2924 Salvia bowleyana HOM05D007597 ORTHO05D009608 1.7e-25 120.2 144 47.9
PGR142G2235 Punica granatum HOM05D007597 ORTHO05D009608 3.7e-25 119.0 140 52.9
PGSC0003DMG400026859 Solanum tuberosum HOM05D007597 ORTHO05D009608 3.7e-25 119.0 95 62.1
CSS0009732 Camellia sinensis var. sinensis HOM05D007597 ORTHO05D009608 1.8e-24 116.7 85 65.9
Oeu031613.1 Olea europaea HOM05D007597 ORTHO05D009608 2.4e-24 116.3 90 62.2
Os03g0713200 Oryza sativa ssp. japonica HOM05D007597 ORTHO05D009608 2.7e-23 112.8 96 58.3
Lj6P736T27 Lonicera japonica HOM05D007597 ORTHO05D009608 8.6e-22 107.8 94 54.3
Sopen03g002540 Solanum pennellii HOM05D007597 ORTHO05D009608 2.5e-21 106.3 83 62.7
AagrBONN_evm.TU.Sc2ySwM_228.3100 Anthoceros agrestis HOM05D007597 ORTHO05D009608 2.2e-17 93.2 88 51.1
Sed0011475 Sechium edule HOM05D007597 ORTHO05D009608 7.0e-16 88.2 122 48.4
CBR_g61471 Chara braunii HOM05D007597 ORTHO05D009608 9.2e-16 87.8 94 45.7
Pp3c16_25200 Physcomitrium patens HOM05D007597 ORTHO05D009608 7.3e-13 78.2 103 43.7
COL.COLO4_16605 Corchorus olitorius HOM05D007597 ORTHO05D009608 2.8e-12 76.3 63 54.0
QL03p036112 Quercus lobata HOM05D007597 ORTHO05D009608 9.8e-10 67.8 66 60.6
TAR371G0144 Trochodendron aralioides HOM05D007597 ORTHO05D009608 2.0e-07 60.1 83 48.2
Nitab4.5_0006778g0040 Nicotiana tabacum HOM05D007597 ORTHO05D009608 4.6e-07 58.9 94 51.1
SMO115G0274 Selaginella moellendorffii HOM05D007597 ORTHO05D009608 7.8e-07 58.2 90 41.1
FAN07G1480 Fragaria x ananassa HOM05D007597 ORTHO05D009608 1.0e-06 57.8 98 44.9
FAN07G2660 Fragaria x ananassa HOM05D007597 ORTHO05D009608 1.0e-06 57.8 98 44.9
Manes.17G084450 Manihot esculenta HOM05D007597 ORTHO05D000073 1.3e-06 57.4 71 50.7
Nitab4.5_0000241g0020 Nicotiana tabacum HOM05D007597 ORTHO05D009608 3.9e-06 55.8 47 68.1


User provided reference genes

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