Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g31269 Brassica carinata HOM05D006770 ORTHO05D008356 2.8e-266 921.4 466 100.0
BcaC06g34103 Brassica carinata HOM05D006770 ORTHO05D008356 6.5e-231 803.9 472 88.8
A06p43970 Brassica napus HOM05D006770 ORTHO05D008356 3.2e-230 801.6 470 88.5
BolC7t43787H Brassica oleracea HOM05D006770 ORTHO05D008356 3.2e-230 801.6 472 88.3
C07p32660 Brassica napus HOM05D006770 ORTHO05D008356 9.4e-230 800.0 472 88.3
BraA06t27272Z Brassica rapa HOM05D006770 ORTHO05D008356 2.6e-227 792.0 467 88.0
Thhalv10004104m.g Eutrema salsugineum HOM05D006770 ORTHO05D008356 5.2e-220 767.7 482 82.4
Sp2g13280 Schrenkiella parvula HOM05D006770 ORTHO05D008356 2.2e-218 762.3 480 82.1
AL5G10970 Arabidopsis lyrata HOM05D006770 ORTHO05D008356 1.3e-202 709.9 448 81.5
AT2G01860 Arabidopsis thaliana HOM05D006770 ORTHO05D008356 1.3e-202 709.9 487 77.4
CARHR144420 Cardamine hirsuta HOM05D006770 ORTHO05D008356 2.2e-202 709.1 475 78.3
Carub.0005s0082 Capsella rubella HOM05D006770 ORTHO05D008356 4.5e-200 701.4 482 76.8
Aa31LG2G8050 Aethionema arabicum HOM05D006770 ORTHO05D008356 1.8e-188 662.9 495 70.9
THA.LOC104813750 Tarenaya hassleriana HOM05D006770 ORTHO05D008356 9.6e-166 587.4 454 68.5
QL02p014697 Quercus lobata HOM05D006770 ORTHO05D008356 9.9e-155 550.8 473 61.7
Atru.chr13.120 Acer truncatum HOM05D006770 ORTHO05D008356 5.1e-151 538.5 474 61.2
Ciclev10000935m.g Citrus clementina HOM05D006770 ORTHO05D008356 2.1e-149 533.1 446 62.1
Potri.005G252300 Populus trichocarpa HOM05D006770 ORTHO05D008356 1.4e-148 530.4 470 59.8
Prupe.5G010100 Prunus persica HOM05D006770 ORTHO05D008356 1.4e-148 530.4 444 61.5
Duzib041G0267 Durio zibethinus HOM05D006770 ORTHO05D008356 2.0e-147 526.6 455 59.8
TAR625G0814 Trochodendron aralioides HOM05D006770 ORTHO05D008356 7.6e-147 524.6 476 59.5
RcHm_v2.0_Chr5g0066911 Rosa chinensis HOM05D006770 ORTHO05D008356 3.8e-146 522.3 445 61.3
Thecc.08G061300 Theobroma cacao HOM05D006770 ORTHO05D008356 4.9e-146 521.9 475 59.2
FAN13G3072 Fragaria x ananassa HOM05D006770 ORTHO05D008356 8.4e-146 521.2 447 61.5
CiPaw.07G136700 Carya illinoinensis HOM05D006770 ORTHO05D008356 1.9e-145 520.0 475 58.5
Haze_22817 Corylus avellana HOM05D006770 ORTHO05D008356 3.2e-145 519.2 486 58.0
MD00G1136800 Malus domestica HOM05D006770 ORTHO05D008356 3.2e-145 519.2 451 60.3
PSO675G2016 Papaver somniferum HOM05D006770 ORTHO05D008356 3.2e-145 519.2 452 61.3
PSO541G3292 Papaver somniferum HOM05D006770 ORTHO05D008356 7.1e-145 518.1 469 59.9
FAN08G2065 Fragaria x ananassa HOM05D006770 ORTHO05D008356 1.6e-144 516.9 447 60.9
COL.COLO4_36416 Corchorus olitorius HOM05D006770 ORTHO05D008356 2.1e-144 516.5 498 56.0
Medtr4g084940 Medicago truncatula HOM05D006770 ORTHO05D008356 2.1e-144 516.5 440 61.6
FAN18G3713 Fragaria x ananassa HOM05D006770 ORTHO05D008356 2.7e-144 516.2 445 61.1
Sabra05G0195800 Salix brachista HOM05D006770 ORTHO05D008356 3.5e-144 515.8 471 58.2
FvH4_5g25440 Fragaria vesca HOM05D006770 ORTHO05D008356 4.6e-144 515.4 445 61.1
TWI79G0343 Tripterygium wilfordii HOM05D006770 ORTHO05D008356 6.0e-144 515.0 460 59.3
CSS0047097 Camellia sinensis var. sinensis HOM05D006770 ORTHO05D008356 1.9e-142 510.0 464 58.6
Manes.17G081600 Manihot esculenta HOM05D006770 ORTHO05D008356 3.3e-142 509.2 465 61.1
Nn5g30983 Nelumbo nucifera HOM05D006770 ORTHO05D008356 4.3e-142 508.8 466 58.8
Glyma.20G013900 Glycine max HOM05D006770 ORTHO05D008356 1.6e-141 506.9 460 57.6
Ca_25485_v3 Cicer arietinum L. HOM05D006770 ORTHO05D008356 2.8e-141 506.1 440 60.9
Gohir.A11G329900 Gossypium hirsutum HOM05D006770 ORTHO05D008356 4.8e-141 505.4 474 57.2
Glyma.07G217000 Glycine max HOM05D006770 ORTHO05D008356 8.1e-141 504.6 460 57.4
CANSAT64G1545 Cannabis sativa HOM05D006770 ORTHO05D008356 6.9e-140 501.5 460 57.4
Oeu032124.1 Olea europaea HOM05D006770 ORTHO05D008356 9.0e-140 501.1 456 58.8
Gorai.006G274800 Gossypium raimondii HOM05D006770 ORTHO05D008356 1.2e-139 500.7 474 56.8
Cfa014101 Carpinus fangiana HOM05D006770 ORTHO05D008356 2.6e-139 499.6 408 64.0
Phvul.001G002700 Phaseolus vulgaris HOM05D006770 ORTHO05D008356 5.8e-139 498.4 428 59.8
Lalb_Chr05g0219451 Lupinus albus HOM05D006770 ORTHO05D008356 1.3e-138 497.3 471 58.2
Gorai.004G294200 Gossypium raimondii HOM05D006770 ORTHO05D008356 1.7e-138 496.9 474 56.3
VMungo0251G0866 Vigna mungo HOM05D006770 ORTHO05D008356 2.9e-138 496.1 452 58.2
PGR031G0937 Punica granatum HOM05D006770 ORTHO05D008356 1.1e-137 494.2 430 61.2
Manes.05G095800 Manihot esculenta HOM05D006770 ORTHO05D008356 3.2e-137 492.7 470 58.5
Rhsim13G0054100 Rhododendron simsii HOM05D006770 ORTHO05D008356 3.2e-137 492.7 465 56.3
Aqoxy6G01625 Aquilegia oxysepala HOM05D006770 ORTHO05D008356 5.5e-137 491.9 460 55.9
Nitab4.5_0001583g0140 Nicotiana tabacum HOM05D006770 ORTHO05D008356 3.5e-136 489.2 454 58.6
Lj4g0024175 Lotus japonicus HOM05D006770 ORTHO05D008356 6.0e-136 488.4 470 56.4
CAN.G79.22 Capsicum annuum HOM05D006770 ORTHO05D008356 1.0e-135 487.6 462 58.2
EL10Ac1g01921 Beta vulgaris HOM05D006770 ORTHO05D008356 2.3e-135 486.5 470 56.0
TPR.G35412 Trifolium pratense HOM05D006770 ORTHO05D008356 3.0e-135 486.1 441 57.6
Sc02g0009170 Simmondsia chinensis HOM05D006770 ORTHO05D008356 3.9e-135 485.7 464 57.8
Nitab4.5_0001225g0180 Nicotiana tabacum HOM05D006770 ORTHO05D008356 6.7e-135 485.0 454 58.1
AUR62040821 Chenopodium quinoa HOM05D006770 ORTHO05D008356 1.1e-134 484.2 481 55.5
Gohir.A01G231900 Gossypium hirsutum HOM05D006770 ORTHO05D008356 3.3e-134 482.6 464 56.0
CsaV3_1G014370 Cucumis sativus L. HOM05D006770 ORTHO05D008356 5.7e-134 481.9 456 56.8
CAN.G79.18 Capsicum annuum HOM05D006770 ORTHO05D008356 7.4e-134 481.5 446 59.0
Sopen02g019170 Solanum pennellii HOM05D006770 ORTHO05D008356 1.3e-133 480.7 451 58.3
CDE04G3028 Ceratophyllum demersum HOM05D006770 ORTHO05D008356 2.8e-133 479.6 457 56.7
Solyc02g070010.1 Solanum lycopersicum HOM05D006770 ORTHO05D008356 3.7e-133 479.2 451 58.3
AUR62035131 Chenopodium quinoa HOM05D006770 ORTHO05D008356 4.8e-133 478.8 463 56.2
PGSC0003DMG400021117 Solanum tuberosum HOM05D006770 ORTHO05D008356 6.2e-133 478.4 453 58.1
Gohir.D08G007000 Gossypium hirsutum HOM05D006770 ORTHO05D008356 8.2e-133 478.0 447 57.5
Sc02g0009150 Simmondsia chinensis HOM05D006770 ORTHO05D008356 5.3e-132 475.3 475 56.8
Psat7g128200 Pisum sativum HOM05D006770 ORTHO05D008356 1.2e-131 474.2 439 57.4
Gorai.009G456100 Gossypium raimondii HOM05D006770 ORTHO05D008356 5.8e-131 471.9 471 55.0
MELO3C004826.2 Cucumis melo HOM05D006770 ORTHO05D008356 1.0e-130 471.1 456 56.4
SalBow7G3490 Salvia bowleyana HOM05D006770 ORTHO05D008356 1.4e-129 467.2 464 55.0
Migut.M00215 Erythranthe guttata HOM05D006770 ORTHO05D008356 1.9e-129 466.8 443 57.1
Hund01783 Selenicereus undatus HOM05D006770 ORTHO05D008356 1.9e-129 466.8 465 53.8
Gohir.D08G275542 Gossypium hirsutum HOM05D006770 ORTHO05D008356 3.2e-129 466.1 415 58.3
Gohir.A13G000201 Gossypium hirsutum HOM05D006770 ORTHO05D008356 5.5e-129 465.3 415 58.1
Cc09_g04530 Coffea canephora HOM05D006770 ORTHO05D008356 3.5e-128 462.6 467 52.7
ECA246G3919 Erigeron canadensis HOM05D006770 ORTHO05D008356 1.8e-127 460.3 403 58.8
HanXRQChr06g0167391 Helianthus annuus HOM05D006770 ORTHO05D008356 1.5e-126 457.2 462 53.0
Ah.00g000990 Amaranthus hybridus HOM05D006770 ORTHO05D008356 3.1e-124 449.5 482 53.3
Atru.chr13.118 Acer truncatum HOM05D006770 ORTHO05D008356 5.3e-124 448.7 469 54.2
DCAR_024417 Daucus carota HOM05D006770 ORTHO05D008356 5.3e-124 448.7 473 54.1
Dinv31957 Davidia involucrata HOM05D006770 ORTHO05D008356 2.0e-123 446.8 354 62.4
Lsat_1_v5_gn_3_16821 Lactuca sativa HOM05D006770 ORTHO05D008356 2.0e-123 446.8 401 56.4
Peaxi162Scf00670g00024 Petunia axillaris HOM05D006770 ORTHO05D008356 5.7e-118 428.7 423 56.5
Gorai.007G379700 Gossypium raimondii HOM05D006770 ORTHO05D008356 8.2e-117 424.9 413 56.7
Actinidia23351 Actinidia chinensis HOM05D006770 ORTHO05D008356 2.2e-114 416.8 432 54.2
ATR0807G062 Amborella trichopoda HOM05D006770 ORTHO05D008356 2.2e-114 416.8 483 50.1
vmacro02830 Vaccinium macrocarpon HOM05D006770 ORTHO05D008356 2.2e-114 416.8 333 61.0
HPP92_007114 Vanilla planifolia HOM05D006770 ORTHO05D008356 9.4e-113 411.4 389 56.3
SGA_v2.0_scaffold538G52786 Striga asiatica HOM05D006770 ORTHO05D008356 2.7e-104 383.3 448 49.1
SGA_v2.0_scaffold476G52129 Striga asiatica HOM05D006770 ORTHO05D008356 8.8e-103 378.3 448 48.9
MD16G1284100 Malus domestica HOM05D006770 ORTHO05D008356 1.3e-101 374.4 392 53.1
Zm00001eb391890 Zea mays HOM05D006770 ORTHO05D008356 1.1e-100 371.3 409 50.4
Lj9P204T39 Lonicera japonica HOM05D006770 ORTHO05D008356 8.5e-98 361.7 330 59.1
SEGI_37300 Sequoiadendron giganteum HOM05D006770 ORTHO05D008356 2.5e-97 360.1 395 48.1
Os02g0118000 Oryza sativa ssp. japonica HOM05D006770 ORTHO05D008356 2.6e-94 350.1 399 49.6
Sed0018053 Sechium edule HOM05D006770 ORTHO05D008356 3.5e-75 286.6 323 52.3
Gohir.D11G349500 Gossypium hirsutum HOM05D006770 ORTHO05D008356 5.0e-74 282.7 221 58.8
SEGI_07142 Sequoiadendron giganteum HOM05D006770 ORTHO05D008356 2.8e-64 250.4 377 39.8
Gohir.A06G000350 Gossypium hirsutum HOM05D006770 ORTHO05D008356 2.1e-56 224.2 192 55.7
Actinidia12910 Actinidia chinensis HOM05D006770 ORTHO05D008356 2.1e-51 207.6 336 42.3
ClCG01G012950 Citrullus lanatus HOM05D006770 ORTHO05D008356 5.1e-42 176.4 196 54.6
CAN.G733.12 Capsicum annuum HOM05D006770 ORTHO05D008356 4.2e-36 156.8 245 42.9
AagrBONN_evm.TU.Sc2ySwM_117.3058 Anthoceros agrestis HOM05D006770 ORTHO05D008356 6.6e-34 149.4 308 33.8
Gohir.D02G000400 Gossypium hirsutum HOM05D006770 ORTHO05D008356 3.8e-21 107.1 150 49.3
CAN.G332.6 Capsicum annuum HOM05D006770 ORTHO05D008356 1.1e-20 105.5 107 53.3
Mapoly0166s0014 Marchantia polymorpha HOM05D006770 ORTHO05D008356 8.7e-18 95.9 233 32.2
VMungo0720G0800 Vigna mungo HOM05D006770 ORTHO05D008356 1.1e-17 95.5 140 45.0
VMungo0331G1801 Vigna mungo HOM05D002295 ORTHO05D008356 1.2e-14 85.5 90 54.4
Pp3c13_18720 Physcomitrium patens HOM05D006770 ORTHO05D008356 2.2e-13 81.3 246 27.6
Pp3c13_18722 Physcomitrium patens HOM05D006770 ORTHO05D008356 2.2e-13 81.3 246 27.6
CBR_g51330 Chara braunii HOM05D009772 ORTHO05D000353 2.9e-13 80.9 320 21.6
Ca_18849_v3 Cicer arietinum L. HOM05D000068 ORTHO05D000084 6.7e-10 69.7 167 25.7
HPP92_006127 Vanilla planifolia HOM05D002479 ORTHO05D002675 1.5e-09 68.6 117 30.8
vmacro02831 Vaccinium macrocarpon HOM05D006770 ORTHO05D008356 5.3e-07 60.1 105 42.9
arahy.Tifrunner.gnm1.ann1.7VJC80 Arachis hypogaea HOM05D003177 ORTHO05D003481 2.6e-06 57.8 165 22.4
arahy.Tifrunner.gnm1.ann1.P62B18 Arachis hypogaea HOM05D003177 ORTHO05D003481 2.6e-06 57.8 165 22.4
arahy.Tifrunner.gnm1.ann1.Y3PJTZ Arachis hypogaea HOM05D003177 ORTHO05D003481 2.6e-06 57.8 165 22.4
arahy.Tifrunner.gnm1.ann1.W18Y25 Arachis hypogaea HOM05D003177 ORTHO05D003481 3.4e-06 57.4 165 22.4


User provided reference genes

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